Wall clock time and date at job start Sun Mar 29 2020 21:50:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.47409 * 2 1 4 4 H 1.08996 * 109.47212 * 174.08946 * 3 2 1 5 5 C 1.50703 * 109.46781 * 54.09198 * 3 2 1 6 6 H 1.08002 * 120.00110 * 239.99988 * 5 3 2 7 7 C 1.37880 * 120.00318 * 59.99773 * 5 3 2 8 8 N 1.31514 * 119.99633 * 0.02562 * 7 5 3 9 9 Si 1.86801 * 120.00109 * 179.97438 * 7 5 3 10 10 H 1.48495 * 109.47003 * 0.02562 * 9 7 5 11 11 H 1.48498 * 109.46875 * 120.00332 * 9 7 5 12 12 H 1.48505 * 109.46920 * 240.00075 * 9 7 5 13 13 N 1.46898 * 109.47288 * 294.09407 * 3 2 1 14 14 C 1.46904 * 110.99778 * 275.79919 * 13 3 2 15 15 C 1.52993 * 109.47186 * 176.18016 * 14 13 3 16 16 C 1.53001 * 109.47233 * 180.02562 * 15 14 13 17 17 H 1.09000 * 110.75269 * 57.01400 * 16 15 14 18 18 C 1.55308 * 110.84881 * 180.71087 * 16 15 14 19 19 C 1.54945 * 100.93917 * 152.31965 * 18 16 15 20 20 O 1.43640 * 105.14118 * 323.55545 * 19 18 16 21 21 C 1.43240 * 109.96801 * 24.42675 * 20 19 18 22 22 H 1.08998 * 109.47493 * 178.54759 * 1 2 3 23 23 H 1.08995 * 109.47416 * 298.55333 * 1 2 3 24 24 H 1.09007 * 109.47071 * 58.54970 * 1 2 3 25 25 H 1.09004 * 109.47090 * 240.00079 * 2 1 3 26 26 H 1.08996 * 109.46899 * 120.00393 * 2 1 3 27 27 H 0.96997 * 119.99724 * 179.97438 * 8 7 5 28 28 H 1.00894 * 111.00366 * 39.74986 * 13 3 2 29 29 H 1.08997 * 109.47143 * 56.17007 * 14 13 3 30 30 H 1.09009 * 109.46770 * 296.17727 * 14 13 3 31 31 H 1.08997 * 109.47401 * 59.99291 * 15 14 13 32 32 H 1.09009 * 109.47030 * 299.99552 * 15 14 13 33 33 H 1.08996 * 111.12773 * 270.24285 * 18 16 15 34 34 H 1.09003 * 111.12162 * 34.40626 * 18 16 15 35 35 H 1.09007 * 110.30873 * 204.64242 * 19 18 16 36 36 H 1.08998 * 110.30999 * 82.47621 * 19 18 16 37 37 H 1.08999 * 109.83141 * 238.77440 * 21 20 19 38 38 H 1.09005 * 109.83099 * 117.80520 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 3.1249 1.4442 0.1058 5 6 1.4219 2.1938 1.1508 6 1 0.8150 3.0670 0.9619 7 6 1.6310 1.7665 2.4450 8 7 2.3704 0.7035 2.6751 9 14 0.8652 2.6983 3.8715 10 1 0.0853 3.8490 3.3494 11 1 -0.0361 1.7922 4.6276 12 1 1.9375 3.1939 4.7715 13 7 1.6703 2.0926 -1.2643 14 6 2.6508 1.7935 -2.3165 15 6 2.1837 2.4067 -3.6381 16 6 3.2046 2.0946 -4.7341 17 1 3.3527 1.0189 -4.8290 18 6 2.7699 2.7188 -6.0883 19 6 4.1453 2.9282 -6.7704 20 8 5.0372 3.3041 -5.7090 21 6 4.5437 2.8114 -4.4579 22 1 -0.3634 -1.0273 -0.0260 23 1 -0.3634 0.4912 0.9026 24 1 -0.3633 0.5362 -0.8767 25 1 1.8934 -0.5138 -0.8900 26 1 1.8933 -0.5139 0.8899 27 1 2.5178 0.4031 3.5855 28 1 0.7404 1.8251 -1.5500 29 1 2.7439 0.7134 -2.4299 30 1 3.6180 2.2147 -2.0422 31 1 2.0905 3.4868 -3.5246 32 1 1.2165 1.9854 -3.9124 33 1 2.1498 2.0272 -6.6585 34 1 2.2580 3.6690 -5.9364 35 1 4.0825 3.7249 -7.5118 36 1 4.4813 2.0021 -7.2367 37 1 4.3836 3.6420 -3.7705 38 1 5.2581 2.1081 -4.0297 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000220889125.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:50:46 Heat of formation + Delta-G solvation = -66.166463 kcal Electronic energy + Delta-G solvation = -16122.246989 eV Core-core repulsion = 13577.808589 eV Total energy + Delta-G solvation = -2544.438400 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.49313 -36.73607 -34.27075 -32.18240 -30.79898 -29.56726 -27.31294 -25.57348 -23.29443 -22.96871 -21.64809 -20.20331 -19.26071 -16.85901 -16.08466 -15.91900 -15.00618 -14.75175 -14.58009 -13.81632 -13.63176 -13.23926 -12.98095 -12.67795 -12.49968 -12.01193 -11.63980 -11.46349 -11.35179 -11.13694 -10.90095 -10.73383 -10.53926 -10.48961 -10.40944 -9.91850 -9.71831 -9.53016 -9.52745 -8.94193 -8.33514 -7.19156 -5.96198 -3.97542 3.32318 3.40558 3.45609 3.86100 4.41338 4.46037 4.67176 4.86550 5.10680 5.21462 5.35669 5.37343 5.47697 5.50819 5.67081 5.73875 5.81684 5.94270 5.99687 6.04455 6.17293 6.34796 6.36598 6.50347 6.53652 6.59466 6.90060 6.96842 7.28950 7.31038 7.51082 7.71002 7.91098 8.30388 8.56847 8.65262 9.08581 9.66258 11.11076 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.044847 B = 0.005117 C = 0.004926 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 624.196682 B = 5471.124039 C = 5682.327267 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.145 4.145 3 C 0.214 3.786 4 H 0.032 0.968 5 C -0.488 4.488 6 H 0.062 0.938 7 C 0.056 3.944 8 N -0.897 5.897 9 Si 0.892 3.108 10 H -0.273 1.273 11 H -0.286 1.286 12 H -0.286 1.286 13 N -0.686 5.686 14 C 0.058 3.942 15 C -0.106 4.106 16 C -0.120 4.120 17 H 0.082 0.918 18 C -0.152 4.152 19 C 0.051 3.949 20 O -0.389 6.389 21 C 0.053 3.947 22 H 0.021 0.979 23 H 0.066 0.934 24 H 0.029 0.971 25 H 0.010 0.990 26 H 0.092 0.908 27 H 0.258 0.742 28 H 0.325 0.675 29 H 0.017 0.983 30 H 0.063 0.937 31 H 0.072 0.928 32 H 0.060 0.940 33 H 0.080 0.920 34 H 0.080 0.920 35 H 0.081 0.919 36 H 0.057 0.943 37 H 0.076 0.924 38 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.225 0.900 -14.661 14.691 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.185 4.185 3 C 0.106 3.894 4 H 0.050 0.950 5 C -0.527 4.527 6 H 0.080 0.920 7 C -0.144 4.144 8 N -0.537 5.537 9 Si 0.721 3.279 10 H -0.198 1.198 11 H -0.213 1.213 12 H -0.212 1.212 13 N -0.316 5.316 14 C -0.072 4.072 15 C -0.144 4.144 16 C -0.139 4.139 17 H 0.100 0.900 18 C -0.190 4.190 19 C -0.026 4.026 20 O -0.309 6.309 21 C -0.023 4.023 22 H 0.040 0.960 23 H 0.085 0.915 24 H 0.048 0.952 25 H 0.028 0.972 26 H 0.110 0.890 27 H 0.068 0.932 28 H 0.143 0.857 29 H 0.036 0.964 30 H 0.082 0.918 31 H 0.091 0.909 32 H 0.079 0.921 33 H 0.099 0.901 34 H 0.098 0.902 35 H 0.099 0.901 36 H 0.075 0.925 37 H 0.095 0.905 38 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 0.776 1.525 -14.352 14.453 hybrid contribution -0.776 -0.802 0.701 1.317 sum 0.000 0.723 -13.651 13.670 Atomic orbital electron populations 1.21562 0.97691 0.97940 1.01253 1.22099 0.95024 1.01225 1.00129 1.19201 0.96034 0.88613 0.85528 0.95012 1.21114 1.30323 1.11445 0.89769 0.92014 1.24920 0.95597 0.95184 0.98723 1.69896 1.39350 1.24234 1.20181 0.86523 0.79017 0.79913 0.82466 1.19753 1.21266 1.21187 1.60871 1.03935 1.63209 1.03627 1.21933 0.97430 0.96834 0.91029 1.21571 0.97328 1.02012 0.93496 1.22733 0.95549 1.00478 0.95122 0.89968 1.23328 0.97615 1.02006 0.96054 1.23335 0.88601 0.99932 0.90718 1.88382 1.48552 1.77915 1.16047 1.23294 0.94452 0.98369 0.86190 0.95952 0.91526 0.95195 0.97153 0.89003 0.93209 0.85720 0.96449 0.91841 0.90928 0.92080 0.90138 0.90156 0.90077 0.92503 0.90546 0.91425 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.71 9.39 37.16 0.35 -2.36 16 2 C -0.15 -3.40 5.50 -26.73 -0.15 -3.55 16 3 C 0.21 5.29 2.33 -68.87 -0.16 5.13 16 4 H 0.03 0.88 7.86 -51.93 -0.41 0.47 16 5 C -0.49 -13.22 7.35 -34.44 -0.25 -13.47 16 6 H 0.06 1.71 7.81 -52.49 -0.41 1.30 16 7 C 0.06 1.54 5.22 -17.82 -0.09 1.44 16 8 N -0.90 -25.37 11.39 55.43 0.63 -24.74 16 9 Si 0.89 21.35 29.54 -169.99 -5.02 16.33 16 10 H -0.27 -6.48 7.11 56.52 0.40 -6.07 16 11 H -0.29 -6.81 7.11 56.52 0.40 -6.40 16 12 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 13 N -0.69 -14.36 6.25 -107.95 -0.68 -15.03 16 14 C 0.06 1.00 5.33 -3.83 -0.02 0.98 16 15 C -0.11 -1.45 4.82 -26.73 -0.13 -1.58 16 16 C -0.12 -1.42 3.03 -88.67 -0.27 -1.68 16 17 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 18 C -0.15 -1.51 6.62 -24.48 -0.16 -1.67 16 19 C 0.05 0.52 7.78 38.18 0.30 0.82 16 20 O -0.39 -5.31 11.36 -35.23 -0.40 -5.71 16 21 C 0.05 0.69 6.57 37.88 0.25 0.94 16 22 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 23 H 0.07 1.56 7.05 -51.93 -0.37 1.19 16 24 H 0.03 0.57 6.42 -51.93 -0.33 0.24 16 25 H 0.01 0.22 7.24 -51.93 -0.38 -0.16 16 26 H 0.09 2.42 6.25 -51.93 -0.32 2.10 16 27 H 0.26 7.00 8.31 -40.82 -0.34 6.67 16 28 H 0.32 6.47 6.56 -39.30 -0.26 6.22 16 29 H 0.02 0.31 7.23 -51.93 -0.38 -0.07 16 30 H 0.06 1.14 7.46 -51.92 -0.39 0.76 16 31 H 0.07 1.03 8.07 -51.93 -0.42 0.61 16 32 H 0.06 0.80 8.14 -51.92 -0.42 0.38 16 33 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.08 0.79 8.04 -51.93 -0.42 0.38 16 35 H 0.08 0.71 8.14 -51.93 -0.42 0.28 16 36 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 37 H 0.08 1.04 7.73 -51.93 -0.40 0.64 16 38 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 LS Contribution 296.83 15.07 4.47 4.47 Total: -1.00 -28.40 296.83 -7.90 -36.30 By element: Atomic # 1 Polarization: 9.94 SS G_CDS: -6.57 Total: 3.37 kcal Atomic # 6 Polarization: -14.66 SS G_CDS: -0.34 Total: -15.00 kcal Atomic # 7 Polarization: -39.72 SS G_CDS: -0.04 Total: -39.77 kcal Atomic # 8 Polarization: -5.31 SS G_CDS: -0.40 Total: -5.71 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.33 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -28.40 -7.90 -36.30 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000220889125.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.864 kcal (2) G-P(sol) polarization free energy of solvation -28.400 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.264 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.902 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.303 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.166 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds