Wall clock time and date at job start Sun Mar 29 2020 21:50:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.47409 * 2 1 4 4 H 1.08996 * 109.47212 * 174.08946 * 3 2 1 5 5 C 1.50703 * 109.46781 * 54.09198 * 3 2 1 6 6 H 1.08002 * 120.00110 * 239.99988 * 5 3 2 7 7 C 1.37880 * 120.00318 * 59.99773 * 5 3 2 8 8 N 1.31514 * 119.99633 * 0.02562 * 7 5 3 9 9 Si 1.86801 * 120.00109 * 179.97438 * 7 5 3 10 10 H 1.48495 * 109.47003 * 0.02562 * 9 7 5 11 11 H 1.48498 * 109.46875 * 120.00332 * 9 7 5 12 12 H 1.48505 * 109.46920 * 240.00075 * 9 7 5 13 13 N 1.46898 * 109.47288 * 294.09407 * 3 2 1 14 14 C 1.46904 * 110.99778 * 275.79919 * 13 3 2 15 15 C 1.52993 * 109.47186 * 176.18016 * 14 13 3 16 16 C 1.53001 * 109.47233 * 180.02562 * 15 14 13 17 17 H 1.09000 * 110.75269 * 57.01400 * 16 15 14 18 18 C 1.55308 * 110.84881 * 180.71087 * 16 15 14 19 19 C 1.54945 * 100.93917 * 152.31965 * 18 16 15 20 20 O 1.43640 * 105.14118 * 323.55545 * 19 18 16 21 21 C 1.43240 * 109.96801 * 24.42675 * 20 19 18 22 22 H 1.08998 * 109.47493 * 178.54759 * 1 2 3 23 23 H 1.08995 * 109.47416 * 298.55333 * 1 2 3 24 24 H 1.09007 * 109.47071 * 58.54970 * 1 2 3 25 25 H 1.09004 * 109.47090 * 240.00079 * 2 1 3 26 26 H 1.08996 * 109.46899 * 120.00393 * 2 1 3 27 27 H 0.96997 * 119.99724 * 179.97438 * 8 7 5 28 28 H 1.00894 * 111.00366 * 39.74986 * 13 3 2 29 29 H 1.08997 * 109.47143 * 56.17007 * 14 13 3 30 30 H 1.09009 * 109.46770 * 296.17727 * 14 13 3 31 31 H 1.08997 * 109.47401 * 59.99291 * 15 14 13 32 32 H 1.09009 * 109.47030 * 299.99552 * 15 14 13 33 33 H 1.08996 * 111.12773 * 270.24285 * 18 16 15 34 34 H 1.09003 * 111.12162 * 34.40626 * 18 16 15 35 35 H 1.09007 * 110.30873 * 204.64242 * 19 18 16 36 36 H 1.08998 * 110.30999 * 82.47621 * 19 18 16 37 37 H 1.08999 * 109.83141 * 238.77440 * 21 20 19 38 38 H 1.09005 * 109.83099 * 117.80520 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 3.1249 1.4442 0.1058 5 6 1.4219 2.1938 1.1508 6 1 0.8150 3.0670 0.9619 7 6 1.6310 1.7665 2.4450 8 7 2.3704 0.7035 2.6751 9 14 0.8652 2.6983 3.8715 10 1 0.0853 3.8490 3.3494 11 1 -0.0361 1.7922 4.6276 12 1 1.9375 3.1939 4.7715 13 7 1.6703 2.0926 -1.2643 14 6 2.6508 1.7935 -2.3165 15 6 2.1837 2.4067 -3.6381 16 6 3.2046 2.0946 -4.7341 17 1 3.3527 1.0189 -4.8290 18 6 2.7699 2.7188 -6.0883 19 6 4.1453 2.9282 -6.7704 20 8 5.0372 3.3041 -5.7090 21 6 4.5437 2.8114 -4.4579 22 1 -0.3634 -1.0273 -0.0260 23 1 -0.3634 0.4912 0.9026 24 1 -0.3633 0.5362 -0.8767 25 1 1.8934 -0.5138 -0.8900 26 1 1.8933 -0.5139 0.8899 27 1 2.5178 0.4031 3.5855 28 1 0.7404 1.8251 -1.5500 29 1 2.7439 0.7134 -2.4299 30 1 3.6180 2.2147 -2.0422 31 1 2.0905 3.4868 -3.5246 32 1 1.2165 1.9854 -3.9124 33 1 2.1498 2.0272 -6.6585 34 1 2.2580 3.6690 -5.9364 35 1 4.0825 3.7249 -7.5118 36 1 4.4813 2.0021 -7.2367 37 1 4.3836 3.6420 -3.7705 38 1 5.2581 2.1081 -4.0297 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000220889125.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:50:46 Heat of formation + Delta-G solvation = -84.402888 kcal Electronic energy + Delta-G solvation = -16123.037779 eV Core-core repulsion = 13577.808589 eV Total energy + Delta-G solvation = -2545.229191 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.45452 -38.44770 -35.66724 -33.91403 -32.33148 -30.70479 -28.84711 -27.25608 -25.14042 -24.13990 -22.70120 -21.28077 -21.13245 -18.17300 -17.72599 -16.99701 -16.65597 -16.41313 -15.70532 -15.33171 -15.14892 -14.48461 -14.31364 -14.18680 -13.97161 -13.72225 -12.90547 -12.81657 -12.76127 -12.68365 -12.43869 -12.27923 -12.09655 -11.80152 -11.64075 -11.55258 -11.48466 -11.26992 -10.91500 -10.48423 -10.43674 -8.91220 -8.05347 -6.13781 1.41954 1.44831 1.56049 2.46185 2.96640 3.23728 3.48107 3.58826 3.93994 4.07260 4.26214 4.30359 4.33539 4.45768 4.54026 4.60142 4.66677 4.76530 4.78489 4.85299 4.87870 4.96255 5.01220 5.10213 5.14372 5.24895 5.36205 5.42618 5.44534 5.69163 5.75071 5.85849 6.05805 6.32877 6.69675 6.89133 7.00874 7.54408 9.00467 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.044847 B = 0.005117 C = 0.004926 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 624.196682 B = 5471.124039 C = 5682.327267 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.138 4.138 3 C 0.219 3.781 4 H -0.006 1.006 5 C -0.500 4.500 6 H 0.052 0.948 7 C 0.012 3.988 8 N -0.922 5.922 9 Si 0.952 3.048 10 H -0.269 1.269 11 H -0.281 1.281 12 H -0.285 1.285 13 N -0.690 5.690 14 C 0.060 3.940 15 C -0.093 4.093 16 C -0.115 4.115 17 H 0.089 0.911 18 C -0.144 4.144 19 C 0.043 3.957 20 O -0.412 6.412 21 C 0.051 3.949 22 H 0.043 0.957 23 H 0.041 0.959 24 H 0.051 0.949 25 H 0.025 0.975 26 H 0.059 0.941 27 H 0.258 0.742 28 H 0.333 0.667 29 H 0.017 0.983 30 H 0.049 0.951 31 H 0.067 0.933 32 H 0.075 0.925 33 H 0.103 0.897 34 H 0.081 0.919 35 H 0.097 0.903 36 H 0.069 0.931 37 H 0.063 0.937 38 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.001 0.960 -16.120 16.180 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.178 4.178 3 C 0.110 3.890 4 H 0.011 0.989 5 C -0.538 4.538 6 H 0.071 0.929 7 C -0.186 4.186 8 N -0.563 5.563 9 Si 0.778 3.222 10 H -0.193 1.193 11 H -0.207 1.207 12 H -0.211 1.211 13 N -0.321 5.321 14 C -0.070 4.070 15 C -0.130 4.130 16 C -0.134 4.134 17 H 0.107 0.893 18 C -0.181 4.181 19 C -0.033 4.033 20 O -0.333 6.333 21 C -0.026 4.026 22 H 0.062 0.938 23 H 0.060 0.940 24 H 0.070 0.930 25 H 0.044 0.956 26 H 0.078 0.922 27 H 0.068 0.932 28 H 0.152 0.848 29 H 0.035 0.965 30 H 0.068 0.932 31 H 0.086 0.914 32 H 0.094 0.906 33 H 0.122 0.878 34 H 0.100 0.900 35 H 0.116 0.884 36 H 0.087 0.913 37 H 0.082 0.918 38 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -0.458 1.590 -15.833 15.919 hybrid contribution -0.341 -0.816 1.103 1.414 sum -0.799 0.774 -14.729 14.771 Atomic orbital electron populations 1.21450 0.95771 0.99373 1.00985 1.21942 0.96660 0.99957 0.99256 1.18953 0.93506 0.89618 0.86913 0.98852 1.21331 1.30233 1.11337 0.90948 0.92930 1.25611 0.96009 0.95918 1.01022 1.70026 1.40297 1.25364 1.20580 0.85594 0.78208 0.78850 0.79514 1.19286 1.20694 1.21128 1.60732 1.05088 1.62971 1.03349 1.21967 0.96152 0.97027 0.91859 1.21431 0.98419 1.01353 0.91841 1.22676 0.94251 1.00884 0.95617 0.89271 1.23312 0.97692 1.02428 0.94695 1.23583 0.88260 1.01205 0.90212 1.88358 1.49836 1.78299 1.16771 1.23261 0.95213 0.97934 0.86153 0.93799 0.93980 0.93044 0.95609 0.92207 0.93247 0.84810 0.96488 0.93246 0.91433 0.90616 0.87841 0.90048 0.88444 0.91278 0.91833 0.91862 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.88 9.39 71.98 0.68 -4.20 16 2 C -0.14 -6.47 5.50 30.59 0.17 -6.30 16 3 C 0.22 10.97 2.33 44.17 0.10 11.07 16 4 H -0.01 -0.37 7.86 -2.39 -0.02 -0.39 16 5 C -0.50 -27.36 7.35 25.60 0.19 -27.17 16 6 H 0.05 2.92 7.81 -2.91 -0.02 2.90 16 7 C 0.01 0.68 5.22 84.66 0.44 1.12 16 8 N -0.92 -53.04 11.39 21.45 0.24 -52.80 16 9 Si 0.95 43.96 29.54 68.60 2.03 45.99 16 10 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 11 H -0.28 -12.67 7.11 99.48 0.71 -11.97 16 12 H -0.29 -13.08 7.11 99.48 0.71 -12.37 16 13 N -0.69 -28.58 6.25 -495.46 -3.10 -31.68 16 14 C 0.06 2.04 5.33 86.30 0.46 2.50 16 15 C -0.09 -2.37 4.82 30.59 0.15 -2.22 16 16 C -0.12 -2.50 3.03 -9.53 -0.03 -2.53 16 17 H 0.09 1.84 8.14 -2.39 -0.02 1.82 16 18 C -0.14 -2.42 6.62 32.05 0.21 -2.21 16 19 C 0.04 0.78 7.78 72.65 0.56 1.35 16 20 O -0.41 -10.82 11.36 -148.98 -1.69 -12.51 16 21 C 0.05 1.29 6.57 72.45 0.48 1.77 16 22 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 23 H 0.04 1.92 7.05 -2.39 -0.02 1.91 16 24 H 0.05 1.86 6.42 -2.38 -0.02 1.85 16 25 H 0.03 1.09 7.24 -2.39 -0.02 1.07 16 26 H 0.06 3.20 6.25 -2.39 -0.01 3.18 16 27 H 0.26 14.21 8.31 -92.71 -0.77 13.44 16 28 H 0.33 12.75 6.56 -89.70 -0.59 12.16 16 29 H 0.02 0.59 7.23 -2.39 -0.02 0.57 16 30 H 0.05 1.82 7.46 -2.38 -0.02 1.80 16 31 H 0.07 1.82 8.07 -2.39 -0.02 1.80 16 32 H 0.08 1.75 8.14 -2.38 -0.02 1.73 16 33 H 0.10 1.30 8.14 -2.39 -0.02 1.28 16 34 H 0.08 1.37 8.04 -2.39 -0.02 1.35 16 35 H 0.10 1.44 8.14 -2.38 -0.02 1.42 16 36 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 37 H 0.06 1.75 7.73 -2.39 -0.02 1.73 16 38 H 0.06 1.62 8.14 -2.38 -0.02 1.60 16 Total: -1.00 -61.01 296.83 1.32 -59.69 By element: Atomic # 1 Polarization: 17.70 SS G_CDS: 0.43 Total: 18.12 kcal Atomic # 6 Polarization: -30.22 SS G_CDS: 3.41 Total: -26.81 kcal Atomic # 7 Polarization: -81.63 SS G_CDS: -2.85 Total: -84.48 kcal Atomic # 8 Polarization: -10.82 SS G_CDS: -1.69 Total: -12.51 kcal Atomic # 14 Polarization: 43.96 SS G_CDS: 2.03 Total: 45.99 kcal Total: -61.01 1.32 -59.69 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000220889125.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.712 kcal (2) G-P(sol) polarization free energy of solvation -61.008 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.720 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.317 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.691 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.403 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds