Wall clock time and date at job start Sun Mar 29 2020 21:49:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53003 * 109.47235 * 2 1 4 4 H 1.09000 * 109.46802 * 178.18849 * 3 2 1 5 5 C 1.50700 * 109.46778 * 298.19122 * 3 2 1 6 6 H 1.07990 * 120.00346 * 120.00258 * 5 3 2 7 7 C 1.37881 * 119.99754 * 299.99362 * 5 3 2 8 8 N 1.31510 * 120.00174 * 180.02562 * 7 5 3 9 9 Si 1.86804 * 119.99929 * 0.02562 * 7 5 3 10 10 H 1.48499 * 109.46852 * 89.99900 * 9 7 5 11 11 H 1.48494 * 109.46965 * 209.99277 * 9 7 5 12 12 H 1.48491 * 109.47246 * 329.99662 * 9 7 5 13 13 N 1.46898 * 109.47349 * 58.18672 * 3 2 1 14 14 C 1.47113 * 110.98486 * 58.32601 * 13 3 2 15 15 C 1.53096 * 109.20832 * 182.37363 * 14 13 3 16 16 H 1.09002 * 109.50827 * 183.21813 * 15 14 13 17 17 C 1.53000 * 109.50726 * 63.12875 * 15 14 13 18 18 O 1.43013 * 109.29460 * 303.17414 * 15 14 13 19 19 C 1.43023 * 113.74058 * 58.69176 * 18 15 14 20 20 H 1.08997 * 109.50164 * 61.30796 * 19 18 15 21 21 C 1.53000 * 109.50860 * 181.39713 * 19 18 15 22 22 C 1.47012 * 111.00378 * 181.98458 * 13 3 2 23 23 H 1.08996 * 109.47364 * 305.25364 * 1 2 3 24 24 H 1.09000 * 109.46543 * 65.24722 * 1 2 3 25 25 H 1.09001 * 109.46863 * 185.24821 * 1 2 3 26 26 H 1.08994 * 109.47374 * 239.99353 * 2 1 3 27 27 H 1.09005 * 109.46916 * 119.99576 * 2 1 3 28 28 H 0.96997 * 120.00428 * 180.02562 * 8 7 5 29 29 H 1.09006 * 109.49220 * 62.47697 * 14 13 3 30 30 H 1.08993 * 109.56655 * 302.31586 * 14 13 3 31 31 H 1.08994 * 109.47420 * 300.08785 * 17 15 14 32 32 H 1.08999 * 109.46976 * 180.08581 * 17 15 14 33 33 H 1.09002 * 109.46731 * 60.08975 * 17 15 14 34 34 H 1.08996 * 109.47462 * 59.99553 * 21 19 18 35 35 H 1.08996 * 109.47074 * 180.02562 * 21 19 18 36 36 H 1.09003 * 109.46828 * 299.99530 * 21 19 18 37 37 H 1.08995 * 109.50504 * 57.67240 * 22 13 3 38 38 H 1.08999 * 109.53733 * 297.56866 * 22 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 3.1296 1.4426 0.0325 5 6 1.5747 2.1398 -1.2523 6 1 0.9513 3.0187 -1.1811 7 6 1.9449 1.6556 -2.4891 8 7 1.5393 2.2643 -3.5819 9 14 3.0229 0.1349 -2.6123 10 1 2.1654 -1.0761 -2.6707 11 1 3.8519 0.2142 -3.8417 12 1 3.9080 0.0578 -1.4225 13 7 1.5150 2.1476 1.1769 14 6 1.9171 1.4705 2.4195 15 6 1.3007 2.2028 3.6143 16 1 1.6415 1.7398 4.5404 17 6 -0.2249 2.1197 3.5329 18 8 1.7062 3.5740 3.5886 19 6 1.3302 4.2633 2.3931 20 1 0.2443 4.2646 2.3001 21 6 1.8397 5.7048 2.4528 22 6 1.9469 3.5528 1.1854 23 1 -0.3634 0.5931 0.8391 24 1 -0.3632 0.4303 -0.9333 25 1 -0.3633 -1.0234 0.0940 26 1 1.8934 -0.5139 -0.8899 27 1 1.8934 -0.5138 0.8901 28 1 1.7994 1.9235 -4.4520 29 1 3.0036 1.4835 2.5057 30 1 1.5649 0.4391 2.4036 31 1 -0.5651 2.5829 2.6067 32 1 -0.6631 2.6426 4.3829 33 1 -0.5333 1.0744 3.5510 34 1 2.9258 5.7029 2.5444 35 1 1.5525 6.2297 1.5417 36 1 1.4032 6.2090 3.3150 37 1 1.6166 4.0406 0.2684 38 1 3.0339 3.5997 1.2514 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000221888187.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:49:13 Heat of formation + Delta-G solvation = -40.555978 kcal Electronic energy + Delta-G solvation = -17413.206120 eV Core-core repulsion = 14869.878274 eV Total energy + Delta-G solvation = -2543.327846 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.55029 -36.33031 -33.02941 -32.73293 -31.46503 -29.67884 -27.20046 -26.22498 -24.13057 -22.74262 -22.11078 -19.52377 -18.83887 -16.52382 -16.06271 -15.93625 -15.03860 -14.54445 -14.28208 -13.74758 -13.37267 -13.25054 -12.83857 -12.46812 -12.25825 -12.11319 -11.77393 -11.60803 -11.29360 -11.06274 -10.95570 -10.81547 -10.71981 -10.57226 -10.15602 -10.11426 -9.76900 -9.37126 -9.05319 -8.88535 -8.55628 -7.38207 -6.09538 -4.07175 3.24385 3.34679 3.36039 4.08839 4.37422 4.64695 5.20445 5.26215 5.28663 5.43692 5.48624 5.62860 5.72787 5.80991 5.90273 5.99632 6.05210 6.11516 6.15144 6.21642 6.26264 6.29504 6.36574 6.53796 6.60773 6.64217 6.72212 6.88667 7.02421 7.11282 7.39594 7.55965 7.61953 7.88201 8.02003 8.61581 8.96009 9.52843 11.03000 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.031732 B = 0.009842 C = 0.008529 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 882.190549 B = 2844.213549 C = 3282.073632 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.121 4.121 3 C 0.185 3.815 4 H -0.004 1.004 5 C -0.499 4.499 6 H 0.083 0.917 7 C 0.072 3.928 8 N -0.898 5.898 9 Si 0.881 3.119 10 H -0.277 1.277 11 H -0.297 1.297 12 H -0.270 1.270 13 N -0.514 5.514 14 C 0.016 3.984 15 C 0.093 3.907 16 H 0.093 0.907 17 C -0.173 4.173 18 O -0.386 6.386 19 C 0.084 3.916 20 H 0.065 0.935 21 C -0.141 4.141 22 C 0.035 3.965 23 H 0.059 0.941 24 H 0.065 0.935 25 H 0.021 0.979 26 H 0.046 0.954 27 H 0.033 0.967 28 H 0.264 0.736 29 H 0.028 0.972 30 H 0.082 0.918 31 H 0.076 0.924 32 H 0.049 0.951 33 H 0.060 0.940 34 H 0.058 0.942 35 H 0.072 0.928 36 H 0.057 0.943 37 H 0.099 0.901 38 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.696 0.062 11.871 11.891 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.158 4.158 3 C 0.078 3.922 4 H 0.014 0.986 5 C -0.537 4.537 6 H 0.100 0.900 7 C -0.129 4.129 8 N -0.536 5.536 9 Si 0.712 3.288 10 H -0.204 1.204 11 H -0.225 1.225 12 H -0.195 1.195 13 N -0.239 5.239 14 C -0.112 4.112 15 C 0.035 3.965 16 H 0.111 0.889 17 C -0.230 4.230 18 O -0.306 6.306 19 C 0.026 3.974 20 H 0.083 0.917 21 C -0.199 4.199 22 C -0.093 4.093 23 H 0.078 0.922 24 H 0.084 0.916 25 H 0.040 0.960 26 H 0.064 0.936 27 H 0.052 0.948 28 H 0.074 0.926 29 H 0.047 0.953 30 H 0.100 0.900 31 H 0.095 0.905 32 H 0.068 0.932 33 H 0.079 0.921 34 H 0.077 0.923 35 H 0.091 0.909 36 H 0.077 0.923 37 H 0.117 0.883 38 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges -1.103 0.143 11.779 11.831 hybrid contribution 1.419 -1.163 -0.453 1.890 sum 0.317 -1.020 11.326 11.376 Atomic orbital electron populations 1.21483 0.95255 0.98166 1.03403 1.21881 0.97631 0.98013 0.98324 1.19736 0.92501 0.90720 0.89268 0.98619 1.20868 1.31930 1.13274 0.87645 0.89955 1.24877 0.95605 0.96708 0.95753 1.69867 1.45632 1.40480 0.97670 0.86947 0.80920 0.84041 0.76878 1.20438 1.22496 1.19546 1.62175 1.59233 1.01290 1.01155 1.22821 0.97549 0.99232 0.91631 1.22176 0.94453 0.82332 0.97569 0.88919 1.22262 0.95879 1.02190 1.02694 1.87937 1.79992 1.22965 1.39717 1.22239 0.98887 0.91704 0.84534 0.91668 1.21720 1.01792 0.94286 1.02107 1.22668 0.97336 0.90374 0.98911 0.92198 0.91609 0.95952 0.93587 0.94840 0.92639 0.95341 0.89994 0.90482 0.93157 0.92085 0.92261 0.90927 0.92348 0.88279 0.95375 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.55 9.50 37.16 0.35 -2.20 16 2 C -0.12 -2.61 4.72 -26.73 -0.13 -2.74 16 3 C 0.18 4.31 1.35 -68.86 -0.09 4.21 16 4 H 0.00 -0.09 7.20 -51.93 -0.37 -0.47 16 5 C -0.50 -13.42 7.40 -34.44 -0.25 -13.67 16 6 H 0.08 2.40 6.79 -52.49 -0.36 2.04 16 7 C 0.07 2.03 5.45 -17.82 -0.10 1.93 16 8 N -0.90 -26.78 13.96 55.43 0.77 -26.01 16 9 Si 0.88 21.81 24.39 -169.99 -4.15 17.67 16 10 H -0.28 -6.71 6.85 56.52 0.39 -6.33 16 11 H -0.30 -7.40 7.11 56.52 0.40 -7.00 16 12 H -0.27 -6.52 6.53 56.52 0.37 -6.15 16 13 N -0.51 -10.35 3.02 -227.64 -0.69 -11.04 16 14 C 0.02 0.29 4.72 -3.66 -0.02 0.27 16 15 C 0.09 1.41 3.92 -26.68 -0.10 1.31 16 16 H 0.09 1.22 8.14 -51.93 -0.42 0.80 16 17 C -0.17 -2.43 8.89 37.16 0.33 -2.10 16 18 O -0.39 -6.49 10.28 -35.23 -0.36 -6.85 16 19 C 0.08 1.38 3.03 -26.68 -0.08 1.30 16 20 H 0.07 1.07 6.49 -51.93 -0.34 0.74 16 21 C -0.14 -1.94 9.57 37.16 0.36 -1.59 16 22 C 0.04 0.69 4.66 -3.72 -0.02 0.67 16 23 H 0.06 1.16 7.39 -51.93 -0.38 0.77 16 24 H 0.06 1.50 7.46 -51.93 -0.39 1.11 16 25 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 26 H 0.05 1.06 3.24 -51.93 -0.17 0.89 16 27 H 0.03 0.64 6.43 -51.93 -0.33 0.31 16 28 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 29 H 0.03 0.52 8.14 -51.93 -0.42 0.09 16 30 H 0.08 1.36 6.19 -51.93 -0.32 1.04 16 31 H 0.08 1.23 6.12 -51.93 -0.32 0.91 16 32 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 34 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 35 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 36 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 37 H 0.10 2.10 6.28 -51.93 -0.33 1.78 16 38 H 0.03 0.57 8.14 -51.93 -0.42 0.14 16 LS Contribution 280.51 15.07 4.23 4.23 Total: -1.00 -28.83 280.51 -6.24 -35.07 By element: Atomic # 1 Polarization: 5.83 SS G_CDS: -6.29 Total: -0.46 kcal Atomic # 6 Polarization: -12.86 SS G_CDS: 0.25 Total: -12.61 kcal Atomic # 7 Polarization: -37.13 SS G_CDS: 0.09 Total: -37.05 kcal Atomic # 8 Polarization: -6.49 SS G_CDS: -0.36 Total: -6.85 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -4.15 Total: 17.67 kcal Total LS contribution 4.23 Total: 4.23 kcal Total: -28.83 -6.24 -35.07 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000221888187.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.485 kcal (2) G-P(sol) polarization free energy of solvation -28.832 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.317 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.239 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.071 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.556 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds