Wall clock time and date at job start Sun Mar 29 2020 21:49:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53003 * 109.47235 * 2 1 4 4 H 1.09000 * 109.46802 * 178.18849 * 3 2 1 5 5 C 1.50700 * 109.46778 * 298.19122 * 3 2 1 6 6 H 1.07990 * 120.00346 * 120.00258 * 5 3 2 7 7 C 1.37881 * 119.99754 * 299.99362 * 5 3 2 8 8 N 1.31510 * 120.00174 * 180.02562 * 7 5 3 9 9 Si 1.86804 * 119.99929 * 0.02562 * 7 5 3 10 10 H 1.48499 * 109.46852 * 89.99900 * 9 7 5 11 11 H 1.48494 * 109.46965 * 209.99277 * 9 7 5 12 12 H 1.48491 * 109.47246 * 329.99662 * 9 7 5 13 13 N 1.46898 * 109.47349 * 58.18672 * 3 2 1 14 14 C 1.47113 * 110.98486 * 58.32601 * 13 3 2 15 15 C 1.53096 * 109.20832 * 182.37363 * 14 13 3 16 16 H 1.09002 * 109.50827 * 183.21813 * 15 14 13 17 17 C 1.53000 * 109.50726 * 63.12875 * 15 14 13 18 18 O 1.43013 * 109.29460 * 303.17414 * 15 14 13 19 19 C 1.43023 * 113.74058 * 58.69176 * 18 15 14 20 20 H 1.08997 * 109.50164 * 61.30796 * 19 18 15 21 21 C 1.53000 * 109.50860 * 181.39713 * 19 18 15 22 22 C 1.47012 * 111.00378 * 181.98458 * 13 3 2 23 23 H 1.08996 * 109.47364 * 305.25364 * 1 2 3 24 24 H 1.09000 * 109.46543 * 65.24722 * 1 2 3 25 25 H 1.09001 * 109.46863 * 185.24821 * 1 2 3 26 26 H 1.08994 * 109.47374 * 239.99353 * 2 1 3 27 27 H 1.09005 * 109.46916 * 119.99576 * 2 1 3 28 28 H 0.96997 * 120.00428 * 180.02562 * 8 7 5 29 29 H 1.09006 * 109.49220 * 62.47697 * 14 13 3 30 30 H 1.08993 * 109.56655 * 302.31586 * 14 13 3 31 31 H 1.08994 * 109.47420 * 300.08785 * 17 15 14 32 32 H 1.08999 * 109.46976 * 180.08581 * 17 15 14 33 33 H 1.09002 * 109.46731 * 60.08975 * 17 15 14 34 34 H 1.08996 * 109.47462 * 59.99553 * 21 19 18 35 35 H 1.08996 * 109.47074 * 180.02562 * 21 19 18 36 36 H 1.09003 * 109.46828 * 299.99530 * 21 19 18 37 37 H 1.08995 * 109.50504 * 57.67240 * 22 13 3 38 38 H 1.08999 * 109.53733 * 297.56866 * 22 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 3.1296 1.4426 0.0325 5 6 1.5747 2.1398 -1.2523 6 1 0.9513 3.0187 -1.1811 7 6 1.9449 1.6556 -2.4891 8 7 1.5393 2.2643 -3.5819 9 14 3.0229 0.1349 -2.6123 10 1 2.1654 -1.0761 -2.6707 11 1 3.8519 0.2142 -3.8417 12 1 3.9080 0.0578 -1.4225 13 7 1.5150 2.1476 1.1769 14 6 1.9171 1.4705 2.4195 15 6 1.3007 2.2028 3.6143 16 1 1.6415 1.7398 4.5404 17 6 -0.2249 2.1197 3.5329 18 8 1.7062 3.5740 3.5886 19 6 1.3302 4.2633 2.3931 20 1 0.2443 4.2646 2.3001 21 6 1.8397 5.7048 2.4528 22 6 1.9469 3.5528 1.1854 23 1 -0.3634 0.5931 0.8391 24 1 -0.3632 0.4303 -0.9333 25 1 -0.3633 -1.0234 0.0940 26 1 1.8934 -0.5139 -0.8899 27 1 1.8934 -0.5138 0.8901 28 1 1.7994 1.9235 -4.4520 29 1 3.0036 1.4835 2.5057 30 1 1.5649 0.4391 2.4036 31 1 -0.5651 2.5829 2.6067 32 1 -0.6631 2.6426 4.3829 33 1 -0.5333 1.0744 3.5510 34 1 2.9258 5.7029 2.5444 35 1 1.5525 6.2297 1.5417 36 1 1.4032 6.2090 3.3150 37 1 1.6166 4.0406 0.2684 38 1 3.0339 3.5997 1.2514 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000221888187.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:49:13 Heat of formation + Delta-G solvation = -59.793841 kcal Electronic energy + Delta-G solvation = -17414.040336 eV Core-core repulsion = 14869.878274 eV Total energy + Delta-G solvation = -2544.162062 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.96905 -37.96700 -34.63744 -34.30245 -33.27953 -30.97574 -28.96556 -27.64219 -25.80497 -24.38119 -23.51309 -21.24732 -20.26597 -18.55184 -17.63545 -17.28375 -16.65336 -16.19371 -15.66456 -15.29979 -15.03690 -14.89808 -14.71634 -13.93785 -13.79801 -13.27359 -13.11985 -12.95909 -12.70739 -12.69383 -12.60753 -12.46649 -12.31690 -12.09008 -11.89774 -11.85242 -11.33175 -11.04981 -10.86552 -10.68858 -10.36816 -9.03767 -8.27776 -6.28357 1.26759 1.31786 1.40268 2.30021 2.83121 3.03959 3.13873 3.93022 4.02547 4.12944 4.20213 4.26128 4.36469 4.38076 4.51821 4.55621 4.59463 4.69426 4.75102 4.86641 4.92484 4.96830 5.06933 5.08967 5.15829 5.18067 5.28071 5.31740 5.33521 5.51016 5.63763 5.75066 6.00051 6.26074 6.35699 6.64986 6.76253 7.35063 8.88227 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.031732 B = 0.009842 C = 0.008529 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 882.190549 B = 2844.213549 C = 3282.073632 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.122 4.122 3 C 0.188 3.812 4 H -0.022 1.022 5 C -0.490 4.490 6 H 0.045 0.955 7 C 0.018 3.982 8 N -0.945 5.945 9 Si 0.938 3.062 10 H -0.264 1.264 11 H -0.300 1.300 12 H -0.259 1.259 13 N -0.517 5.517 14 C 0.015 3.985 15 C 0.091 3.909 16 H 0.124 0.876 17 C -0.167 4.167 18 O -0.392 6.392 19 C 0.092 3.908 20 H 0.066 0.934 21 C -0.138 4.138 22 C 0.038 3.962 23 H 0.067 0.933 24 H 0.030 0.970 25 H 0.052 0.948 26 H 0.033 0.967 27 H 0.065 0.935 28 H 0.264 0.736 29 H 0.021 0.979 30 H 0.096 0.904 31 H 0.052 0.948 32 H 0.066 0.934 33 H 0.075 0.925 34 H 0.057 0.943 35 H 0.077 0.923 36 H 0.078 0.922 37 H 0.069 0.931 38 H 0.015 0.985 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.648 -1.360 14.318 14.397 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.159 4.159 3 C 0.080 3.920 4 H -0.005 1.005 5 C -0.528 4.528 6 H 0.063 0.937 7 C -0.179 4.179 8 N -0.586 5.586 9 Si 0.766 3.234 10 H -0.190 1.190 11 H -0.228 1.228 12 H -0.183 1.183 13 N -0.241 5.241 14 C -0.113 4.113 15 C 0.033 3.967 16 H 0.141 0.859 17 C -0.224 4.224 18 O -0.312 6.312 19 C 0.034 3.966 20 H 0.084 0.916 21 C -0.195 4.195 22 C -0.091 4.091 23 H 0.086 0.914 24 H 0.049 0.951 25 H 0.071 0.929 26 H 0.052 0.948 27 H 0.084 0.916 28 H 0.073 0.927 29 H 0.039 0.961 30 H 0.114 0.886 31 H 0.071 0.929 32 H 0.085 0.915 33 H 0.094 0.906 34 H 0.076 0.924 35 H 0.096 0.904 36 H 0.097 0.903 37 H 0.088 0.912 38 H 0.033 0.967 Dipole moment (debyes) X Y Z Total from point charges -1.059 -1.282 14.259 14.356 hybrid contribution 1.370 -0.653 -1.164 1.913 sum 0.311 -1.935 13.095 13.241 Atomic orbital electron populations 1.21386 0.94294 0.99934 1.01840 1.21850 0.98459 0.96409 0.99203 1.19570 0.91322 0.92071 0.89047 1.00460 1.21032 1.30305 1.12022 0.89477 0.93651 1.25610 0.97131 0.99705 0.95448 1.70007 1.47765 1.42523 0.98272 0.86020 0.79480 0.80966 0.76944 1.19003 1.22819 1.18326 1.62125 1.59053 1.01490 1.01478 1.22971 0.97417 1.00075 0.90877 1.22400 0.95182 0.81441 0.97668 0.85861 1.22202 0.94896 1.03192 1.02126 1.87943 1.80206 1.23801 1.39236 1.22174 0.98645 0.92637 0.83129 0.91638 1.21720 1.01773 0.92717 1.03310 1.22625 0.96613 0.90442 0.99384 0.91421 0.95090 0.92879 0.94831 0.91640 0.92680 0.96052 0.88552 0.92865 0.91543 0.90569 0.92372 0.90448 0.90334 0.91226 0.96696 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.53 9.50 71.98 0.68 -3.84 16 2 C -0.12 -5.00 4.72 30.60 0.14 -4.85 16 3 C 0.19 8.70 1.35 44.17 0.06 8.76 16 4 H -0.02 -1.09 7.20 -2.39 -0.02 -1.11 16 5 C -0.49 -27.18 7.40 25.60 0.19 -26.99 16 6 H 0.05 2.80 6.79 -2.92 -0.02 2.78 16 7 C 0.02 1.06 5.45 84.66 0.46 1.52 16 8 N -0.94 -58.33 13.96 21.45 0.30 -58.03 16 9 Si 0.94 45.12 24.39 68.60 1.67 46.79 16 10 H -0.26 -12.06 6.85 99.48 0.68 -11.38 16 11 H -0.30 -14.48 7.11 99.48 0.71 -13.78 16 12 H -0.26 -11.85 6.53 99.48 0.65 -11.20 16 13 N -0.52 -20.54 3.02 -874.13 -2.64 -23.18 16 14 C 0.01 0.48 4.72 86.29 0.41 0.89 16 15 C 0.09 2.47 3.92 30.63 0.12 2.59 16 16 H 0.12 2.68 8.14 -2.39 -0.02 2.66 16 17 C -0.17 -4.16 8.89 71.98 0.64 -3.53 16 18 O -0.39 -12.22 10.28 -148.98 -1.53 -13.75 16 19 C 0.09 2.93 3.03 30.63 0.09 3.02 16 20 H 0.07 2.10 6.49 -2.39 -0.02 2.08 16 21 C -0.14 -3.61 9.57 71.98 0.69 -2.92 16 22 C 0.04 1.50 4.66 86.31 0.40 1.90 16 23 H 0.07 2.47 7.39 -2.39 -0.02 2.46 16 24 H 0.03 1.38 7.46 -2.39 -0.02 1.37 16 25 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 26 H 0.03 1.47 3.24 -2.39 -0.01 1.46 16 27 H 0.07 2.28 6.43 -2.38 -0.02 2.26 16 28 H 0.26 15.41 8.31 -92.71 -0.77 14.64 16 29 H 0.02 0.73 8.14 -2.38 -0.02 0.71 16 30 H 0.10 2.83 6.19 -2.39 -0.01 2.81 16 31 H 0.05 1.59 6.12 -2.39 -0.01 1.58 16 32 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 33 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 34 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 35 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 36 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 37 H 0.07 3.12 6.28 -2.39 -0.01 3.11 16 38 H 0.01 0.61 8.14 -2.39 -0.02 0.59 16 Total: -1.00 -63.30 280.51 2.63 -60.67 By element: Atomic # 1 Polarization: 10.03 SS G_CDS: 0.94 Total: 10.97 kcal Atomic # 6 Polarization: -27.35 SS G_CDS: 3.89 Total: -23.46 kcal Atomic # 7 Polarization: -78.88 SS G_CDS: -2.34 Total: -81.22 kcal Atomic # 8 Polarization: -12.22 SS G_CDS: -1.53 Total: -13.75 kcal Atomic # 14 Polarization: 45.12 SS G_CDS: 1.67 Total: 46.79 kcal Total: -63.30 2.63 -60.67 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000221888187.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.875 kcal (2) G-P(sol) polarization free energy of solvation -63.296 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.421 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.627 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.669 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.794 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds