Wall clock time and date at job start Sun Mar 29 2020 21:49:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52994 * 109.47171 * 2 1 4 4 H 1.08998 * 109.46980 * 302.43453 * 3 2 1 5 5 C 1.50698 * 109.46885 * 182.43171 * 3 2 1 6 6 H 1.08001 * 120.00054 * 245.44747 * 5 3 2 7 7 C 1.37878 * 119.99701 * 65.45471 * 5 3 2 8 8 N 1.31510 * 120.00530 * 9.16854 * 7 5 3 9 9 Si 1.86806 * 119.99738 * 189.17301 * 7 5 3 10 10 H 1.48500 * 109.47130 * 84.99389 * 9 7 5 11 11 H 1.48502 * 109.47189 * 204.98938 * 9 7 5 12 12 H 1.48497 * 109.47308 * 324.99304 * 9 7 5 13 13 N 1.46900 * 109.47036 * 62.43225 * 3 2 1 14 14 C 1.47015 * 110.99885 * 179.97438 * 13 3 2 15 15 C 1.53093 * 109.25895 * 177.60945 * 14 13 3 16 16 H 1.08997 * 109.50773 * 296.87072 * 15 14 13 17 17 C 1.52999 * 109.51053 * 176.78430 * 15 14 13 18 18 O 1.43019 * 109.25814 * 56.84807 * 15 14 13 19 19 C 1.43018 * 113.74099 * 301.33242 * 18 15 14 20 20 H 1.09000 * 109.54016 * 178.62898 * 19 18 15 21 21 C 1.53000 * 109.49995 * 298.73428 * 19 18 15 22 22 C 1.47023 * 110.99968 * 56.36909 * 13 3 2 23 23 H 1.08994 * 109.47130 * 60.00322 * 1 2 3 24 24 H 1.09006 * 109.47112 * 180.02562 * 1 2 3 25 25 H 1.08997 * 109.47182 * 300.00151 * 1 2 3 26 26 H 1.09006 * 109.46955 * 239.99730 * 2 1 3 27 27 H 1.09001 * 109.46611 * 120.00384 * 2 1 3 28 28 H 0.97002 * 120.00474 * 179.97438 * 8 7 5 29 29 H 1.09001 * 109.50791 * 57.67322 * 14 13 3 30 30 H 1.08999 * 109.54219 * 297.56505 * 14 13 3 31 31 H 1.09003 * 109.46803 * 59.99832 * 17 15 14 32 32 H 1.09005 * 109.46623 * 300.00151 * 17 15 14 33 33 H 1.08993 * 109.47489 * 180.02562 * 17 15 14 34 34 H 1.09000 * 109.46554 * 179.78080 * 21 19 18 35 35 H 1.08998 * 109.47415 * 299.77526 * 21 19 18 36 36 H 1.08999 * 109.47474 * 59.78782 * 21 19 18 37 37 H 1.09001 * 109.50172 * 302.32320 * 22 13 3 38 38 H 1.08995 * 109.51016 * 62.45203 * 22 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6415 1.9687 -0.8673 5 6 3.5458 1.4428 -0.0603 6 1 4.1195 1.8195 0.7736 7 6 4.1910 0.9623 -1.1801 8 7 3.5023 0.6728 -2.2624 9 14 6.0435 0.7225 -1.1598 10 1 6.3643 -0.6062 -0.5794 11 1 6.5673 0.7959 -2.5475 12 1 6.6715 1.7870 -0.3367 13 7 1.5989 2.1177 1.2277 14 6 2.0722 3.5092 1.2628 15 6 1.5416 4.1914 2.5264 16 1 0.4527 4.2263 2.4913 17 6 2.0959 5.6150 2.6097 18 8 1.9595 3.4482 3.6747 19 6 1.5155 2.0887 3.6736 20 1 1.8909 1.5819 4.5626 21 6 -0.0141 2.0511 3.6716 22 6 2.0464 1.3856 2.4216 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8899 26 1 1.8934 -0.5139 -0.8900 27 1 1.8933 -0.5139 0.8900 28 1 3.9562 0.3351 -3.0503 29 1 1.7086 4.0396 0.3827 30 1 3.1621 3.5235 1.2718 31 1 1.7802 6.1797 1.7324 32 1 3.1847 5.5793 2.6464 33 1 1.7181 6.1000 3.5097 34 1 -0.3519 1.0147 3.6668 35 1 -0.3911 2.5520 4.5632 36 1 -0.3889 2.5594 2.7832 37 1 1.6638 0.3655 2.3876 38 1 3.1358 1.3656 2.4493 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000221888245.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:49:15 Heat of formation + Delta-G solvation = -53.235347 kcal Electronic energy + Delta-G solvation = -17360.511247 eV Core-core repulsion = 14816.633583 eV Total energy + Delta-G solvation = -2543.877665 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.39467 -36.05642 -32.89373 -32.52613 -31.27219 -29.59109 -26.67149 -26.21909 -24.12169 -22.27024 -22.18345 -19.38119 -18.72532 -16.48131 -15.87595 -15.65175 -14.71473 -14.46824 -14.09522 -13.83333 -13.21481 -12.85946 -12.43717 -12.37795 -12.12546 -11.71351 -11.60562 -11.39210 -11.34509 -11.05602 -10.88781 -10.80634 -10.64068 -10.51647 -10.16832 -9.82315 -9.54861 -9.50449 -9.27267 -8.78951 -8.38306 -7.14320 -6.03290 -4.11950 3.26466 3.33503 3.36521 4.20948 4.39482 4.95873 5.22398 5.39673 5.41268 5.59156 5.63194 5.71183 5.82476 5.91383 6.08572 6.14251 6.19605 6.30713 6.34749 6.36582 6.40863 6.54810 6.57319 6.71890 6.73305 6.86333 6.99446 7.11969 7.23924 7.56568 7.66233 7.73873 7.88368 8.09498 8.27764 8.38861 8.97202 9.54256 10.99074 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.025667 B = 0.010120 C = 0.008469 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1090.638416 B = 2766.131673 C = 3305.255645 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.106 4.106 3 C 0.212 3.788 4 H 0.046 0.954 5 C -0.546 4.546 6 H 0.056 0.944 7 C 0.072 3.928 8 N -0.884 5.884 9 Si 0.883 3.117 10 H -0.280 1.280 11 H -0.287 1.287 12 H -0.276 1.276 13 N -0.528 5.528 14 C 0.035 3.965 15 C 0.085 3.915 16 H 0.059 0.941 17 C -0.142 4.142 18 O -0.386 6.386 19 C 0.088 3.912 20 H 0.091 0.909 21 C -0.170 4.170 22 C 0.028 3.972 23 H 0.041 0.959 24 H 0.026 0.974 25 H 0.050 0.950 26 H 0.073 0.927 27 H 0.036 0.964 28 H 0.261 0.739 29 H 0.070 0.930 30 H 0.048 0.952 31 H 0.068 0.932 32 H 0.060 0.940 33 H 0.056 0.944 34 H 0.059 0.941 35 H 0.046 0.954 36 H 0.072 0.928 37 H 0.078 0.922 38 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.013 3.476 8.073 10.119 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.145 4.145 3 C 0.106 3.894 4 H 0.064 0.936 5 C -0.585 4.585 6 H 0.074 0.926 7 C -0.131 4.131 8 N -0.521 5.521 9 Si 0.711 3.289 10 H -0.206 1.206 11 H -0.213 1.213 12 H -0.201 1.201 13 N -0.253 5.253 14 C -0.094 4.094 15 C 0.027 3.973 16 H 0.077 0.923 17 C -0.199 4.199 18 O -0.305 6.305 19 C 0.030 3.970 20 H 0.109 0.891 21 C -0.228 4.228 22 C -0.101 4.101 23 H 0.060 0.940 24 H 0.045 0.955 25 H 0.069 0.931 26 H 0.091 0.909 27 H 0.055 0.945 28 H 0.071 0.929 29 H 0.089 0.911 30 H 0.066 0.934 31 H 0.087 0.913 32 H 0.079 0.921 33 H 0.075 0.925 34 H 0.078 0.922 35 H 0.066 0.934 36 H 0.091 0.909 37 H 0.097 0.903 38 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -5.407 3.493 8.009 10.275 hybrid contribution 1.902 -0.439 -0.389 1.991 sum -3.505 3.054 7.621 8.927 Atomic orbital electron populations 1.21726 0.98457 0.98544 1.00979 1.21562 0.92624 0.99304 1.00985 1.19302 0.92843 0.90606 0.86674 0.93575 1.21673 0.92617 1.42317 1.01862 0.92593 1.24892 0.97802 0.95282 0.95171 1.69946 1.35681 1.44177 1.02342 0.86757 0.86309 0.78711 0.77132 1.20584 1.21284 1.20092 1.62730 1.58102 1.01123 1.03321 1.22521 0.99341 0.91078 0.96460 1.22189 0.98081 0.91105 0.85937 0.92289 1.21721 1.01925 0.94588 1.01695 1.87930 1.76762 1.22859 1.42964 1.22283 0.93955 0.82651 0.98121 0.89120 1.22245 0.96442 1.02122 1.01967 1.22609 0.98953 0.98155 0.90407 0.93974 0.95525 0.93067 0.90869 0.94484 0.92877 0.91111 0.93362 0.91317 0.92109 0.92487 0.92186 0.93450 0.90910 0.90345 0.93775 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.73 9.78 37.16 0.36 -2.36 16 2 C -0.11 -2.43 4.90 -26.73 -0.13 -2.56 16 3 C 0.21 5.13 1.72 -68.87 -0.12 5.01 16 4 H 0.05 1.26 8.09 -51.93 -0.42 0.84 16 5 C -0.55 -14.51 7.01 -34.44 -0.24 -14.75 16 6 H 0.06 1.53 5.83 -52.49 -0.31 1.22 16 7 C 0.07 1.95 5.19 -17.82 -0.09 1.85 16 8 N -0.88 -24.85 12.14 55.43 0.67 -24.18 16 9 Si 0.88 21.19 29.55 -169.99 -5.02 16.17 16 10 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 11 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 12 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 13 N -0.53 -10.94 3.47 -227.73 -0.79 -11.73 16 14 C 0.03 0.69 4.59 -3.71 -0.02 0.67 16 15 C 0.08 1.42 3.02 -26.68 -0.08 1.34 16 16 H 0.06 0.96 6.49 -51.93 -0.34 0.62 16 17 C -0.14 -1.99 9.57 37.16 0.36 -1.63 16 18 O -0.39 -6.91 10.28 -35.23 -0.36 -7.28 16 19 C 0.09 1.46 3.92 -26.68 -0.10 1.35 16 20 H 0.09 1.35 8.14 -51.93 -0.42 0.93 16 21 C -0.17 -2.49 8.89 37.16 0.33 -2.16 16 22 C 0.03 0.53 4.36 -3.71 -0.02 0.52 16 23 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 24 H 0.03 0.46 8.14 -51.93 -0.42 0.04 16 25 H 0.05 0.95 7.67 -51.93 -0.40 0.55 16 26 H 0.07 1.87 6.84 -51.93 -0.36 1.52 16 27 H 0.04 0.82 6.16 -51.93 -0.32 0.50 16 28 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 29 H 0.07 1.39 8.14 -51.93 -0.42 0.97 16 30 H 0.05 1.07 6.66 -51.93 -0.35 0.73 16 31 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 32 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 33 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 35 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 36 H 0.07 1.16 6.12 -51.93 -0.32 0.84 16 37 H 0.08 1.49 6.06 -51.93 -0.31 1.18 16 38 H 0.04 0.96 6.68 -51.93 -0.35 0.62 16 LS Contribution 287.90 15.07 4.34 4.34 Total: -1.00 -27.59 287.90 -7.32 -34.91 By element: Atomic # 1 Polarization: 6.89 SS G_CDS: -6.40 Total: 0.49 kcal Atomic # 6 Polarization: -12.97 SS G_CDS: 0.25 Total: -12.72 kcal Atomic # 7 Polarization: -35.79 SS G_CDS: -0.12 Total: -35.91 kcal Atomic # 8 Polarization: -6.91 SS G_CDS: -0.36 Total: -7.28 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Total LS contribution 4.34 Total: 4.34 kcal Total: -27.59 -7.32 -34.91 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000221888245.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.326 kcal (2) G-P(sol) polarization free energy of solvation -27.593 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.919 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.316 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.909 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.235 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds