Wall clock time and date at job start Sun Mar 29 2020 21:49:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52994 * 109.47171 * 2 1 4 4 H 1.08998 * 109.46980 * 302.43453 * 3 2 1 5 5 C 1.50698 * 109.46885 * 182.43171 * 3 2 1 6 6 H 1.08001 * 120.00054 * 245.44747 * 5 3 2 7 7 C 1.37878 * 119.99701 * 65.45471 * 5 3 2 8 8 N 1.31510 * 120.00530 * 9.16854 * 7 5 3 9 9 Si 1.86806 * 119.99738 * 189.17301 * 7 5 3 10 10 H 1.48500 * 109.47130 * 84.99389 * 9 7 5 11 11 H 1.48502 * 109.47189 * 204.98938 * 9 7 5 12 12 H 1.48497 * 109.47308 * 324.99304 * 9 7 5 13 13 N 1.46900 * 109.47036 * 62.43225 * 3 2 1 14 14 C 1.47015 * 110.99885 * 179.97438 * 13 3 2 15 15 C 1.53093 * 109.25895 * 177.60945 * 14 13 3 16 16 H 1.08997 * 109.50773 * 296.87072 * 15 14 13 17 17 C 1.52999 * 109.51053 * 176.78430 * 15 14 13 18 18 O 1.43019 * 109.25814 * 56.84807 * 15 14 13 19 19 C 1.43018 * 113.74099 * 301.33242 * 18 15 14 20 20 H 1.09000 * 109.54016 * 178.62898 * 19 18 15 21 21 C 1.53000 * 109.49995 * 298.73428 * 19 18 15 22 22 C 1.47023 * 110.99968 * 56.36909 * 13 3 2 23 23 H 1.08994 * 109.47130 * 60.00322 * 1 2 3 24 24 H 1.09006 * 109.47112 * 180.02562 * 1 2 3 25 25 H 1.08997 * 109.47182 * 300.00151 * 1 2 3 26 26 H 1.09006 * 109.46955 * 239.99730 * 2 1 3 27 27 H 1.09001 * 109.46611 * 120.00384 * 2 1 3 28 28 H 0.97002 * 120.00474 * 179.97438 * 8 7 5 29 29 H 1.09001 * 109.50791 * 57.67322 * 14 13 3 30 30 H 1.08999 * 109.54219 * 297.56505 * 14 13 3 31 31 H 1.09003 * 109.46803 * 59.99832 * 17 15 14 32 32 H 1.09005 * 109.46623 * 300.00151 * 17 15 14 33 33 H 1.08993 * 109.47489 * 180.02562 * 17 15 14 34 34 H 1.09000 * 109.46554 * 179.78080 * 21 19 18 35 35 H 1.08998 * 109.47415 * 299.77526 * 21 19 18 36 36 H 1.08999 * 109.47474 * 59.78782 * 21 19 18 37 37 H 1.09001 * 109.50172 * 302.32320 * 22 13 3 38 38 H 1.08995 * 109.51016 * 62.45203 * 22 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6415 1.9687 -0.8673 5 6 3.5458 1.4428 -0.0603 6 1 4.1195 1.8195 0.7736 7 6 4.1910 0.9623 -1.1801 8 7 3.5023 0.6728 -2.2624 9 14 6.0435 0.7225 -1.1598 10 1 6.3643 -0.6062 -0.5794 11 1 6.5673 0.7959 -2.5475 12 1 6.6715 1.7870 -0.3367 13 7 1.5989 2.1177 1.2277 14 6 2.0722 3.5092 1.2628 15 6 1.5416 4.1914 2.5264 16 1 0.4527 4.2263 2.4913 17 6 2.0959 5.6150 2.6097 18 8 1.9595 3.4482 3.6747 19 6 1.5155 2.0887 3.6736 20 1 1.8909 1.5819 4.5626 21 6 -0.0141 2.0511 3.6716 22 6 2.0464 1.3856 2.4216 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8899 26 1 1.8934 -0.5139 -0.8900 27 1 1.8933 -0.5139 0.8900 28 1 3.9562 0.3351 -3.0503 29 1 1.7086 4.0396 0.3827 30 1 3.1621 3.5235 1.2718 31 1 1.7802 6.1797 1.7324 32 1 3.1847 5.5793 2.6464 33 1 1.7181 6.1000 3.5097 34 1 -0.3519 1.0147 3.6668 35 1 -0.3911 2.5520 4.5632 36 1 -0.3889 2.5594 2.7832 37 1 1.6638 0.3655 2.3876 38 1 3.1358 1.3656 2.4493 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000221888245.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:49:14 Heat of formation + Delta-G solvation = -70.134105 kcal Electronic energy + Delta-G solvation = -17361.244032 eV Core-core repulsion = 14816.633583 eV Total energy + Delta-G solvation = -2544.610450 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.89701 -37.76414 -34.47208 -34.23821 -33.03653 -30.94519 -28.53453 -27.63333 -25.89614 -23.96940 -23.58067 -21.09671 -20.33753 -18.41590 -17.43223 -17.15756 -16.47071 -16.10758 -15.59959 -15.46468 -14.86565 -14.67174 -13.92642 -13.79910 -13.40991 -13.26277 -13.21056 -13.00336 -12.86964 -12.65565 -12.51054 -12.46962 -12.27534 -12.12778 -11.87537 -11.64987 -11.34159 -11.16412 -10.97108 -10.47079 -10.29574 -8.97240 -8.10402 -6.27702 1.32856 1.35238 1.42972 2.36902 2.89221 3.10726 3.33203 4.01083 4.09971 4.25282 4.30768 4.35320 4.50367 4.55708 4.64731 4.68307 4.76369 4.83318 4.86679 4.96107 5.02724 5.12559 5.12998 5.21905 5.26866 5.30563 5.37049 5.43027 5.53732 5.59447 5.74737 5.90483 6.16397 6.30847 6.38085 6.57765 6.91656 7.41408 8.88026 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.025667 B = 0.010120 C = 0.008469 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1090.638416 B = 2766.131673 C = 3305.255645 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.100 4.100 3 C 0.218 3.782 4 H 0.009 0.991 5 C -0.553 4.553 6 H 0.043 0.957 7 C 0.027 3.973 8 N -0.910 5.910 9 Si 0.940 3.060 10 H -0.275 1.275 11 H -0.282 1.282 12 H -0.277 1.277 13 N -0.519 5.519 14 C 0.036 3.964 15 C 0.090 3.910 16 H 0.073 0.927 17 C -0.138 4.138 18 O -0.396 6.396 19 C 0.088 3.912 20 H 0.113 0.887 21 C -0.162 4.162 22 C 0.030 3.970 23 H 0.033 0.967 24 H 0.049 0.951 25 H 0.063 0.937 26 H 0.041 0.959 27 H 0.040 0.960 28 H 0.262 0.738 29 H 0.065 0.935 30 H 0.016 0.984 31 H 0.084 0.916 32 H 0.049 0.951 33 H 0.077 0.923 34 H 0.072 0.928 35 H 0.066 0.934 36 H 0.059 0.941 37 H 0.083 0.917 38 H 0.012 0.988 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.823 3.658 9.668 11.864 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.138 4.138 3 C 0.110 3.890 4 H 0.027 0.973 5 C -0.592 4.592 6 H 0.061 0.939 7 C -0.174 4.174 8 N -0.548 5.548 9 Si 0.766 3.234 10 H -0.200 1.200 11 H -0.207 1.207 12 H -0.202 1.202 13 N -0.243 5.243 14 C -0.093 4.093 15 C 0.033 3.967 16 H 0.091 0.909 17 C -0.195 4.195 18 O -0.316 6.316 19 C 0.030 3.970 20 H 0.130 0.870 21 C -0.219 4.219 22 C -0.099 4.099 23 H 0.052 0.948 24 H 0.068 0.932 25 H 0.082 0.918 26 H 0.060 0.940 27 H 0.059 0.941 28 H 0.072 0.928 29 H 0.084 0.916 30 H 0.034 0.966 31 H 0.103 0.897 32 H 0.068 0.932 33 H 0.096 0.904 34 H 0.091 0.909 35 H 0.085 0.915 36 H 0.078 0.922 37 H 0.101 0.899 38 H 0.031 0.969 Dipole moment (debyes) X Y Z Total from point charges -6.220 3.679 9.618 12.030 hybrid contribution 2.157 -0.480 -0.878 2.378 sum -4.062 3.199 8.740 10.155 Atomic orbital electron populations 1.21589 0.95567 1.00136 1.01156 1.21399 0.95128 0.97774 0.99517 1.19076 0.91403 0.91388 0.87086 0.97261 1.21874 0.94080 1.41878 1.01330 0.93917 1.25546 1.01589 0.95284 0.94966 1.70047 1.37085 1.44944 1.02751 0.85863 0.81799 0.78577 0.77167 1.20016 1.20749 1.20198 1.62684 1.57503 1.01482 1.02622 1.22571 0.97425 0.90920 0.98424 1.22232 0.98746 0.91913 0.83837 0.90949 1.21732 1.01208 0.93058 1.03512 1.87932 1.77245 1.23396 1.43030 1.22413 0.95545 0.81937 0.97075 0.86963 1.22164 0.94368 1.03113 1.02272 1.22656 0.97143 0.98834 0.91224 0.94784 0.93210 0.91807 0.94025 0.94139 0.92848 0.91633 0.96558 0.89736 0.93168 0.90430 0.90897 0.91462 0.92220 0.89886 0.96931 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.81 9.78 71.98 0.70 -4.10 16 2 C -0.10 -4.59 4.90 30.59 0.15 -4.44 16 3 C 0.22 10.80 1.72 44.17 0.08 10.88 16 4 H 0.01 0.54 8.09 -2.39 -0.02 0.52 16 5 C -0.55 -30.26 7.01 25.60 0.18 -30.08 16 6 H 0.04 2.41 5.83 -2.91 -0.02 2.40 16 7 C 0.03 1.48 5.19 84.66 0.44 1.92 16 8 N -0.91 -52.37 12.14 21.45 0.26 -52.11 16 9 Si 0.94 44.18 29.55 68.60 2.03 46.21 16 10 H -0.27 -12.61 7.11 99.48 0.71 -11.90 16 11 H -0.28 -12.96 7.11 99.48 0.71 -12.26 16 12 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 13 N -0.52 -21.58 3.47 -874.39 -3.03 -24.61 16 14 C 0.04 1.43 4.59 86.31 0.40 1.82 16 15 C 0.09 2.90 3.02 30.62 0.09 2.99 16 16 H 0.07 2.17 6.49 -2.39 -0.02 2.15 16 17 C -0.14 -3.59 9.57 71.98 0.69 -2.91 16 18 O -0.40 -13.45 10.28 -148.98 -1.53 -14.98 16 19 C 0.09 2.72 3.92 30.63 0.12 2.84 16 20 H 0.11 3.01 8.14 -2.39 -0.02 2.99 16 21 C -0.16 -4.21 8.89 71.98 0.64 -3.57 16 22 C 0.03 1.15 4.36 86.31 0.38 1.53 16 23 H 0.03 1.32 8.14 -2.39 -0.02 1.30 16 24 H 0.05 1.64 8.14 -2.38 -0.02 1.62 16 25 H 0.06 2.24 7.67 -2.39 -0.02 2.22 16 26 H 0.04 2.17 6.84 -2.38 -0.02 2.15 16 27 H 0.04 1.80 6.16 -2.39 -0.01 1.78 16 28 H 0.26 14.42 8.31 -92.71 -0.77 13.65 16 29 H 0.07 2.64 8.14 -2.39 -0.02 2.62 16 30 H 0.02 0.75 6.66 -2.39 -0.02 0.73 16 31 H 0.08 1.92 8.14 -2.39 -0.02 1.91 16 32 H 0.05 1.41 8.14 -2.38 -0.02 1.39 16 33 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 34 H 0.07 1.71 8.14 -2.39 -0.02 1.70 16 35 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 36 H 0.06 1.72 6.12 -2.39 -0.01 1.70 16 37 H 0.08 3.06 6.06 -2.39 -0.01 3.05 16 38 H 0.01 0.55 6.68 -2.39 -0.02 0.54 16 Total: -1.00 -60.02 287.90 2.60 -57.42 By element: Atomic # 1 Polarization: 10.18 SS G_CDS: 1.01 Total: 11.19 kcal Atomic # 6 Polarization: -26.98 SS G_CDS: 3.86 Total: -23.12 kcal Atomic # 7 Polarization: -73.95 SS G_CDS: -2.77 Total: -76.72 kcal Atomic # 8 Polarization: -13.45 SS G_CDS: -1.53 Total: -14.98 kcal Atomic # 14 Polarization: 44.18 SS G_CDS: 2.03 Total: 46.21 kcal Total: -60.02 2.60 -57.42 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000221888245.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.715 kcal (2) G-P(sol) polarization free energy of solvation -60.020 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.735 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.601 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.419 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.134 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds