Wall clock time and date at job start Sun Mar 29 2020 22:14:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08996 * 109.48213 * 2 1 4 4 C 1.53090 * 109.47930 * 120.02304 * 2 1 3 5 5 C 1.53179 * 109.16608 * 62.37417 * 4 2 1 6 6 H 1.09000 * 109.54531 * 297.02468 * 5 4 2 7 7 N 1.46897 * 109.54444 * 176.84466 * 5 4 2 8 8 C 1.46901 * 110.99809 * 155.00192 * 7 5 4 9 9 C 1.53002 * 109.47035 * 180.02562 * 8 7 5 10 10 C 1.53000 * 109.47387 * 179.97438 * 9 8 7 11 11 C 1.50696 * 109.47258 * 179.97438 * 10 9 8 12 12 H 1.07995 * 120.00304 * 0.02562 * 11 10 9 13 13 C 1.37879 * 120.00042 * 179.97438 * 11 10 9 14 14 N 1.31523 * 119.99852 * 0.02562 * 13 11 10 15 15 Si 1.86792 * 120.00102 * 179.97438 * 13 11 10 16 16 H 1.48499 * 109.47132 * 60.00363 * 15 13 11 17 17 H 1.48507 * 109.47112 * 179.97438 * 15 13 11 18 18 H 1.48490 * 109.47372 * 300.00200 * 15 13 11 19 19 C 1.53179 * 109.03516 * 56.97584 * 5 4 2 20 20 C 1.53091 * 109.16821 * 303.02251 * 19 5 4 21 21 O 1.42904 * 109.47595 * 239.96512 * 2 1 3 22 22 H 1.09001 * 109.47002 * 299.97508 * 1 2 3 23 23 H 1.08993 * 109.46955 * 59.97945 * 1 2 3 24 24 H 1.09000 * 109.47050 * 179.97438 * 1 2 3 25 25 H 1.09008 * 109.52132 * 182.27677 * 4 2 1 26 26 H 1.08996 * 109.52424 * 302.40355 * 4 2 1 27 27 H 1.00897 * 110.99975 * 278.95295 * 7 5 4 28 28 H 1.08999 * 109.46814 * 299.99557 * 8 7 5 29 29 H 1.08994 * 109.47282 * 59.99861 * 8 7 5 30 30 H 1.08996 * 109.47247 * 299.99852 * 9 8 7 31 31 H 1.09004 * 109.47302 * 59.99842 * 9 8 7 32 32 H 1.09005 * 109.47088 * 300.00350 * 10 9 8 33 33 H 1.09004 * 109.46889 * 59.99760 * 10 9 8 34 34 H 0.96997 * 119.99707 * 180.02562 * 14 13 11 35 35 H 1.09002 * 109.52541 * 62.92951 * 19 5 4 36 36 H 1.09001 * 109.52281 * 183.04898 * 19 5 4 37 37 H 1.08990 * 109.48547 * 177.59201 * 20 19 5 38 38 H 1.09003 * 109.47544 * 297.61811 * 20 19 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8936 1.0276 0.0000 4 6 2.0406 -0.7221 1.2496 5 6 1.5758 -2.1812 1.2124 6 1 0.4868 -2.2179 1.2427 7 7 2.1240 -2.9013 2.3695 8 6 1.2868 -4.0580 2.7146 9 6 1.8881 -4.7807 3.9218 10 6 1.0159 -5.9850 4.2817 11 6 1.6084 -6.6971 5.4703 12 1 2.5161 -6.3275 5.9239 13 6 0.9912 -7.8200 5.9794 14 7 -0.1145 -8.2700 5.4273 15 14 1.7261 -8.7031 7.4522 16 1 1.7869 -7.7724 8.6077 17 1 0.8787 -9.8713 7.8024 18 1 3.0964 -9.1674 7.1179 19 6 2.0764 -2.8322 -0.0806 20 6 1.5645 -2.0287 -1.2789 21 8 2.0065 -0.6743 -1.1664 22 1 -0.3633 0.5135 0.8902 23 1 -0.3633 0.5141 -0.8897 24 1 -0.3633 -1.0277 -0.0005 25 1 3.1299 -0.6873 1.2710 26 1 1.6430 -0.2349 2.1399 27 1 3.0782 -3.1829 2.2011 28 1 0.2806 -3.7180 2.9594 29 1 1.2434 -4.7411 1.8664 30 1 2.8945 -5.1206 3.6776 31 1 1.9312 -4.0973 4.7699 32 1 0.0095 -5.6448 4.5261 33 1 0.9724 -6.6685 3.4337 34 1 -0.5489 -9.0597 5.7856 35 1 3.1664 -2.8401 -0.0862 36 1 1.7046 -3.8551 -0.1411 37 1 1.9530 -2.4624 -2.2002 38 1 0.4749 -2.0553 -1.2956 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000223067677.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:14:06 Heat of formation + Delta-G solvation = -73.955820 kcal Electronic energy + Delta-G solvation = -15887.417471 eV Core-core repulsion = 13342.641299 eV Total energy + Delta-G solvation = -2544.776172 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.98512 -36.51341 -33.91626 -32.58475 -31.97283 -30.03964 -28.01341 -25.88354 -23.59619 -23.04861 -21.97964 -20.29759 -19.30573 -16.75561 -16.31441 -16.10379 -15.30146 -14.97433 -14.55002 -14.45371 -13.90065 -13.73237 -13.32573 -12.96308 -12.37744 -12.24225 -11.97245 -11.72524 -11.56456 -11.39883 -11.18061 -11.00274 -10.77657 -10.57729 -10.55736 -10.15321 -9.74260 -9.67592 -9.28812 -9.04622 -8.33172 -8.14022 -5.98569 -4.00717 3.34595 3.38569 3.41461 3.70428 4.29004 4.48651 4.62192 4.69415 4.82312 4.96928 5.07951 5.18662 5.25471 5.34862 5.37147 5.51371 5.56767 5.71035 5.77975 5.79701 5.88510 5.89443 6.00530 6.10979 6.19402 6.32012 6.72444 6.77950 7.08625 7.14129 7.34744 7.62624 7.69205 7.84259 8.01711 8.45093 9.06259 9.63193 11.12890 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.064101 B = 0.004052 C = 0.004024 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 436.705990 B = 6907.691242 C = 6957.398048 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.086 3.914 3 H 0.101 0.899 4 C -0.136 4.136 5 C 0.085 3.915 6 H 0.078 0.922 7 N -0.685 5.685 8 C 0.059 3.941 9 C -0.107 4.107 10 C 0.022 3.978 11 C -0.520 4.520 12 H 0.055 0.945 13 C 0.056 3.944 14 N -0.897 5.897 15 Si 0.893 3.107 16 H -0.277 1.277 17 H -0.287 1.287 18 H -0.277 1.277 19 C -0.187 4.187 20 C 0.062 3.938 21 O -0.380 6.380 22 H 0.068 0.932 23 H 0.060 0.940 24 H 0.063 0.937 25 H 0.070 0.930 26 H 0.079 0.921 27 H 0.338 0.662 28 H 0.065 0.935 29 H 0.024 0.976 30 H 0.044 0.956 31 H 0.056 0.944 32 H 0.016 0.984 33 H 0.013 0.987 34 H 0.261 0.739 35 H 0.072 0.928 36 H 0.073 0.927 37 H 0.090 0.910 38 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.232 14.601 -12.212 19.165 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.245 4.245 2 C 0.028 3.972 3 H 0.119 0.881 4 C -0.175 4.175 5 C -0.026 4.026 6 H 0.096 0.904 7 N -0.315 5.315 8 C -0.069 4.069 9 C -0.145 4.145 10 C -0.015 4.015 11 C -0.558 4.558 12 H 0.073 0.927 13 C -0.145 4.145 14 N -0.537 5.537 15 Si 0.721 3.279 16 H -0.202 1.202 17 H -0.213 1.213 18 H -0.203 1.203 19 C -0.226 4.226 20 C -0.015 4.015 21 O -0.299 6.299 22 H 0.087 0.913 23 H 0.080 0.920 24 H 0.082 0.918 25 H 0.089 0.911 26 H 0.097 0.903 27 H 0.156 0.844 28 H 0.084 0.916 29 H 0.042 0.958 30 H 0.063 0.937 31 H 0.074 0.926 32 H 0.034 0.966 33 H 0.031 0.969 34 H 0.070 0.930 35 H 0.090 0.910 36 H 0.092 0.908 37 H 0.108 0.892 38 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 1.911 14.951 -11.844 19.169 hybrid contribution 0.353 -1.438 0.308 1.513 sum 2.264 13.512 -11.535 17.910 Atomic orbital electron populations 1.22467 0.96475 1.02886 1.02637 1.22218 0.93473 0.96360 0.85180 0.88111 1.22181 1.01871 0.95455 0.97961 1.21631 0.99439 0.93474 0.88041 0.90354 1.60656 1.06090 1.27740 1.36976 1.22154 0.97013 0.89882 0.97894 1.21627 0.99319 0.98181 0.95401 1.19061 0.94792 0.91389 0.96290 1.21223 1.09810 1.10749 1.14008 0.92723 1.25030 0.94984 0.97289 0.97192 1.69960 1.18350 1.24119 1.41234 0.86648 0.79057 0.79122 0.83119 1.20214 1.21304 1.20263 1.22957 1.02230 1.00480 0.96926 1.22503 0.98755 0.82195 0.98088 1.87961 1.73801 1.24739 1.43410 0.91279 0.92043 0.91825 0.91144 0.90256 0.84400 0.91604 0.95787 0.93679 0.92567 0.96611 0.96853 0.92988 0.90974 0.90842 0.89157 0.92868 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.67 8.65 37.16 0.32 -1.35 16 2 C 0.09 0.85 3.91 -26.68 -0.10 0.75 16 3 H 0.10 0.87 8.14 -51.93 -0.42 0.45 16 4 C -0.14 -1.49 5.25 -26.59 -0.14 -1.63 16 5 C 0.08 1.04 2.24 -67.53 -0.15 0.89 16 6 H 0.08 1.00 6.28 -51.93 -0.33 0.68 16 7 N -0.69 -10.06 6.26 -106.53 -0.67 -10.73 16 8 C 0.06 1.03 5.49 -3.82 -0.02 1.01 16 9 C -0.11 -2.25 5.41 -26.73 -0.14 -2.40 16 10 C 0.02 0.58 4.97 -27.88 -0.14 0.45 16 11 C -0.52 -14.97 9.11 -34.44 -0.31 -15.29 16 12 H 0.05 1.53 7.74 -52.49 -0.41 1.12 16 13 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 14 N -0.90 -27.27 13.29 55.43 0.74 -26.53 16 15 Si 0.89 21.90 29.54 -169.99 -5.02 16.87 16 16 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 17 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 18 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 19 C -0.19 -2.10 5.39 -26.59 -0.14 -2.25 16 20 C 0.06 0.64 6.52 37.20 0.24 0.88 16 21 O -0.38 -4.39 10.60 -35.23 -0.37 -4.77 16 22 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 23 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 24 H 0.06 0.60 4.98 -51.93 -0.26 0.35 16 25 H 0.07 0.79 8.14 -51.92 -0.42 0.37 16 26 H 0.08 0.87 8.14 -51.93 -0.42 0.44 16 27 H 0.34 4.75 8.44 -39.29 -0.33 4.42 16 28 H 0.07 1.17 8.06 -51.93 -0.42 0.75 16 29 H 0.02 0.42 7.54 -51.93 -0.39 0.02 16 30 H 0.04 0.93 8.14 -51.93 -0.42 0.50 16 31 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 32 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 34 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 35 H 0.07 0.82 8.08 -51.93 -0.42 0.40 16 36 H 0.07 0.86 7.57 -51.93 -0.39 0.46 16 37 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 38 H 0.05 0.51 6.34 -51.93 -0.33 0.18 16 LS Contribution 298.17 15.07 4.49 4.49 Total: -1.00 -30.35 298.17 -8.16 -38.50 By element: Atomic # 1 Polarization: 6.20 SS G_CDS: -6.64 Total: -0.43 kcal Atomic # 6 Polarization: -16.73 SS G_CDS: -0.69 Total: -17.42 kcal Atomic # 7 Polarization: -37.33 SS G_CDS: 0.07 Total: -37.26 kcal Atomic # 8 Polarization: -4.39 SS G_CDS: -0.37 Total: -4.77 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.02 Total: 16.87 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -30.35 -8.16 -38.50 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000223067677.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.452 kcal (2) G-P(sol) polarization free energy of solvation -30.346 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.797 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.159 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.504 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.956 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds