Wall clock time and date at job start Sun Mar 29 2020 22:14:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08996 * 109.48213 * 2 1 4 4 C 1.53090 * 109.47930 * 120.02304 * 2 1 3 5 5 C 1.53179 * 109.16608 * 62.37417 * 4 2 1 6 6 H 1.09000 * 109.54531 * 297.02468 * 5 4 2 7 7 N 1.46897 * 109.54444 * 176.84466 * 5 4 2 8 8 C 1.46901 * 110.99809 * 155.00192 * 7 5 4 9 9 C 1.53002 * 109.47035 * 180.02562 * 8 7 5 10 10 C 1.53000 * 109.47387 * 179.97438 * 9 8 7 11 11 C 1.50696 * 109.47258 * 179.97438 * 10 9 8 12 12 H 1.07995 * 120.00304 * 0.02562 * 11 10 9 13 13 C 1.37879 * 120.00042 * 179.97438 * 11 10 9 14 14 N 1.31523 * 119.99852 * 0.02562 * 13 11 10 15 15 Si 1.86792 * 120.00102 * 179.97438 * 13 11 10 16 16 H 1.48499 * 109.47132 * 60.00363 * 15 13 11 17 17 H 1.48507 * 109.47112 * 179.97438 * 15 13 11 18 18 H 1.48490 * 109.47372 * 300.00200 * 15 13 11 19 19 C 1.53179 * 109.03516 * 56.97584 * 5 4 2 20 20 C 1.53091 * 109.16821 * 303.02251 * 19 5 4 21 21 O 1.42904 * 109.47595 * 239.96512 * 2 1 3 22 22 H 1.09001 * 109.47002 * 299.97508 * 1 2 3 23 23 H 1.08993 * 109.46955 * 59.97945 * 1 2 3 24 24 H 1.09000 * 109.47050 * 179.97438 * 1 2 3 25 25 H 1.09008 * 109.52132 * 182.27677 * 4 2 1 26 26 H 1.08996 * 109.52424 * 302.40355 * 4 2 1 27 27 H 1.00897 * 110.99975 * 278.95295 * 7 5 4 28 28 H 1.08999 * 109.46814 * 299.99557 * 8 7 5 29 29 H 1.08994 * 109.47282 * 59.99861 * 8 7 5 30 30 H 1.08996 * 109.47247 * 299.99852 * 9 8 7 31 31 H 1.09004 * 109.47302 * 59.99842 * 9 8 7 32 32 H 1.09005 * 109.47088 * 300.00350 * 10 9 8 33 33 H 1.09004 * 109.46889 * 59.99760 * 10 9 8 34 34 H 0.96997 * 119.99707 * 180.02562 * 14 13 11 35 35 H 1.09002 * 109.52541 * 62.92951 * 19 5 4 36 36 H 1.09001 * 109.52281 * 183.04898 * 19 5 4 37 37 H 1.08990 * 109.48547 * 177.59201 * 20 19 5 38 38 H 1.09003 * 109.47544 * 297.61811 * 20 19 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8936 1.0276 0.0000 4 6 2.0406 -0.7221 1.2496 5 6 1.5758 -2.1812 1.2124 6 1 0.4868 -2.2179 1.2427 7 7 2.1240 -2.9013 2.3695 8 6 1.2868 -4.0580 2.7146 9 6 1.8881 -4.7807 3.9218 10 6 1.0159 -5.9850 4.2817 11 6 1.6084 -6.6971 5.4703 12 1 2.5161 -6.3275 5.9239 13 6 0.9912 -7.8200 5.9794 14 7 -0.1145 -8.2700 5.4273 15 14 1.7261 -8.7031 7.4522 16 1 1.7869 -7.7724 8.6077 17 1 0.8787 -9.8713 7.8024 18 1 3.0964 -9.1674 7.1179 19 6 2.0764 -2.8322 -0.0806 20 6 1.5645 -2.0287 -1.2789 21 8 2.0065 -0.6743 -1.1664 22 1 -0.3633 0.5135 0.8902 23 1 -0.3633 0.5141 -0.8897 24 1 -0.3633 -1.0277 -0.0005 25 1 3.1299 -0.6873 1.2710 26 1 1.6430 -0.2349 2.1399 27 1 3.0782 -3.1829 2.2011 28 1 0.2806 -3.7180 2.9594 29 1 1.2434 -4.7411 1.8664 30 1 2.8945 -5.1206 3.6776 31 1 1.9312 -4.0973 4.7699 32 1 0.0095 -5.6448 4.5261 33 1 0.9724 -6.6685 3.4337 34 1 -0.5489 -9.0597 5.7856 35 1 3.1664 -2.8401 -0.0862 36 1 1.7046 -3.8551 -0.1411 37 1 1.9530 -2.4624 -2.2002 38 1 0.4749 -2.0553 -1.2956 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000223067677.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:14:05 Heat of formation + Delta-G solvation = -93.899089 kcal Electronic energy + Delta-G solvation = -15888.282276 eV Core-core repulsion = 13342.641299 eV Total energy + Delta-G solvation = -2545.640977 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.86677 -37.77004 -35.71460 -33.96794 -33.15256 -31.47981 -29.03138 -27.58157 -24.72213 -24.33627 -23.22019 -22.02405 -20.26265 -18.49142 -17.65401 -16.94094 -16.65137 -16.43952 -16.07101 -15.49710 -15.13798 -14.84821 -14.54005 -14.25959 -13.79622 -13.55392 -13.39507 -13.08223 -12.78283 -12.67731 -12.48673 -12.33203 -12.26300 -12.04743 -11.92846 -11.54460 -11.44513 -11.23247 -10.89369 -10.55562 -10.49908 -9.33786 -8.20769 -6.32047 1.39861 1.43116 1.51090 2.40759 2.90511 3.12285 3.17421 3.72987 3.83019 3.99055 4.13450 4.17037 4.24118 4.36297 4.42470 4.44519 4.49542 4.67161 4.72870 4.76837 4.88145 4.93858 4.99755 5.07219 5.13126 5.17906 5.21003 5.24043 5.36888 5.50984 5.73530 5.84621 6.06432 6.26282 6.28701 6.45306 6.84579 7.37286 8.91001 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.064101 B = 0.004052 C = 0.004024 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 436.705990 B = 6907.691242 C = 6957.398048 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.085 3.915 3 H 0.117 0.883 4 C -0.131 4.131 5 C 0.083 3.917 6 H 0.074 0.926 7 N -0.686 5.686 8 C 0.074 3.926 9 C -0.093 4.093 10 C 0.025 3.975 11 C -0.545 4.545 12 H 0.059 0.941 13 C -0.001 4.001 14 N -0.934 5.934 15 Si 0.966 3.034 16 H -0.267 1.267 17 H -0.282 1.282 18 H -0.266 1.266 19 C -0.182 4.182 20 C 0.062 3.938 21 O -0.393 6.393 22 H 0.076 0.924 23 H 0.068 0.932 24 H 0.055 0.945 25 H 0.067 0.933 26 H 0.080 0.920 27 H 0.343 0.657 28 H 0.060 0.940 29 H 0.023 0.977 30 H 0.050 0.950 31 H 0.052 0.948 32 H -0.009 1.009 33 H -0.009 1.009 34 H 0.264 0.736 35 H 0.071 0.929 36 H 0.067 0.933 37 H 0.104 0.896 38 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.049 15.329 -12.178 19.814 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C 0.027 3.973 3 H 0.134 0.866 4 C -0.169 4.169 5 C -0.027 4.027 6 H 0.092 0.908 7 N -0.316 5.316 8 C -0.056 4.056 9 C -0.131 4.131 10 C -0.012 4.012 11 C -0.583 4.583 12 H 0.077 0.923 13 C -0.198 4.198 14 N -0.574 5.574 15 Si 0.790 3.210 16 H -0.192 1.192 17 H -0.207 1.207 18 H -0.191 1.191 19 C -0.221 4.221 20 C -0.015 4.015 21 O -0.313 6.313 22 H 0.095 0.905 23 H 0.087 0.913 24 H 0.074 0.926 25 H 0.086 0.914 26 H 0.098 0.902 27 H 0.162 0.838 28 H 0.078 0.922 29 H 0.042 0.958 30 H 0.068 0.932 31 H 0.071 0.929 32 H 0.009 0.991 33 H 0.009 0.991 34 H 0.073 0.927 35 H 0.090 0.910 36 H 0.086 0.914 37 H 0.122 0.878 38 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 2.738 15.699 -11.822 19.842 hybrid contribution 0.080 -1.641 0.269 1.665 sum 2.819 14.058 -11.553 18.414 Atomic orbital electron populations 1.22444 0.95739 1.02605 1.03423 1.22331 0.94078 0.96770 0.84101 0.86562 1.22134 1.01676 0.94377 0.98719 1.21695 0.99190 0.94172 0.87603 0.90783 1.60593 1.06028 1.26302 1.38643 1.21838 0.96832 0.90586 0.96299 1.21380 0.98598 0.96267 0.96838 1.18968 0.94476 0.92865 0.94925 1.21675 1.10226 1.11462 1.14970 0.92267 1.25994 0.95306 0.98135 1.00390 1.70093 1.19727 1.24687 1.42906 0.85489 0.78495 0.77860 0.79143 1.19184 1.20726 1.19131 1.22890 1.02113 1.00239 0.96880 1.22567 0.99194 0.81695 0.98059 1.87950 1.74179 1.25164 1.43970 0.90482 0.91308 0.92614 0.91412 0.90179 0.83846 0.92173 0.95834 0.93170 0.92941 0.99054 0.99086 0.92740 0.91045 0.91418 0.87841 0.92254 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.96 8.65 71.98 0.62 -2.34 16 2 C 0.08 1.52 3.91 30.63 0.12 1.64 16 3 H 0.12 1.73 8.14 -2.39 -0.02 1.71 16 4 C -0.13 -2.65 5.25 30.68 0.16 -2.49 16 5 C 0.08 1.96 2.24 45.04 0.10 2.06 16 6 H 0.07 1.82 6.28 -2.39 -0.01 1.81 16 7 N -0.69 -19.47 6.26 -490.96 -3.07 -22.54 16 8 C 0.07 2.54 5.49 86.30 0.47 3.02 16 9 C -0.09 -3.91 5.41 30.60 0.17 -3.74 16 10 C 0.03 1.36 4.97 29.85 0.15 1.51 16 11 C -0.55 -31.67 9.11 25.60 0.23 -31.44 16 12 H 0.06 3.30 7.74 -2.91 -0.02 3.28 16 13 C 0.00 -0.03 5.46 84.65 0.46 0.43 16 14 N -0.93 -57.48 13.29 21.45 0.28 -57.19 16 15 Si 0.97 44.67 29.54 68.60 2.03 46.70 16 16 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 17 H -0.28 -12.69 7.11 99.48 0.71 -11.99 16 18 H -0.27 -11.80 7.11 99.48 0.71 -11.10 16 19 C -0.18 -3.88 5.39 30.68 0.17 -3.72 16 20 C 0.06 1.17 6.52 72.01 0.47 1.64 16 21 O -0.39 -8.34 10.60 -148.98 -1.58 -9.92 16 22 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 23 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 24 H 0.05 0.98 4.98 -2.39 -0.01 0.97 16 25 H 0.07 1.42 8.14 -2.38 -0.02 1.40 16 26 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 27 H 0.34 9.22 8.44 -89.70 -0.76 8.47 16 28 H 0.06 2.15 8.06 -2.39 -0.02 2.13 16 29 H 0.02 0.81 7.54 -2.39 -0.02 0.80 16 30 H 0.05 2.04 8.14 -2.39 -0.02 2.02 16 31 H 0.05 2.23 8.14 -2.38 -0.02 2.21 16 32 H -0.01 -0.52 8.14 -2.38 -0.02 -0.54 16 33 H -0.01 -0.53 8.14 -2.38 -0.02 -0.55 16 34 H 0.26 15.24 8.31 -92.71 -0.77 14.47 16 35 H 0.07 1.53 8.08 -2.39 -0.02 1.52 16 36 H 0.07 1.52 7.57 -2.39 -0.02 1.51 16 37 H 0.10 1.67 8.14 -2.39 -0.02 1.65 16 38 H 0.06 1.05 6.34 -2.39 -0.02 1.04 16 Total: -1.00 -64.14 298.17 1.04 -63.10 By element: Atomic # 1 Polarization: 13.04 SS G_CDS: 0.26 Total: 13.30 kcal Atomic # 6 Polarization: -36.56 SS G_CDS: 3.12 Total: -33.44 kcal Atomic # 7 Polarization: -76.95 SS G_CDS: -2.79 Total: -79.73 kcal Atomic # 8 Polarization: -8.34 SS G_CDS: -1.58 Total: -9.92 kcal Atomic # 14 Polarization: 44.67 SS G_CDS: 2.03 Total: 46.70 kcal Total: -64.14 1.04 -63.10 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000223067677.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.800 kcal (2) G-P(sol) polarization free energy of solvation -64.142 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.942 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.043 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.099 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.899 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds