Wall clock time and date at job start Sun Mar 29 2020 21:53:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.47406 * 2 1 4 4 H 1.09003 * 109.47310 * 54.90561 * 3 2 1 5 5 C 1.50694 * 109.47156 * 174.91096 * 3 2 1 6 6 H 1.08006 * 120.00081 * 119.99846 * 5 3 2 7 7 C 1.37876 * 120.00181 * 299.99465 * 5 3 2 8 8 N 1.31513 * 120.00395 * 180.02562 * 7 5 3 9 9 Si 1.86807 * 119.99800 * 0.02562 * 7 5 3 10 10 H 1.48502 * 109.47002 * 89.99816 * 9 7 5 11 11 H 1.48494 * 109.47087 * 209.99582 * 9 7 5 12 12 H 1.48503 * 109.46822 * 329.99866 * 9 7 5 13 13 N 1.46903 * 109.46861 * 294.90699 * 3 2 1 14 14 C 1.46901 * 110.99877 * 156.23886 * 13 3 2 15 15 H 1.09000 * 109.54108 * 34.62697 * 14 13 3 16 16 C 1.53178 * 109.54834 * 274.44993 * 14 13 3 17 17 C 1.53086 * 109.16429 * 183.15355 * 16 14 13 18 18 O 1.42903 * 109.41404 * 57.60644 * 17 16 14 19 19 C 1.42904 * 114.10164 * 298.83912 * 18 17 16 20 20 H 1.09000 * 109.49378 * 181.14522 * 19 18 17 21 21 C 1.52997 * 109.47955 * 301.18245 * 19 18 17 22 22 C 1.53097 * 109.40931 * 61.15796 * 19 18 17 23 23 H 1.09000 * 109.47092 * 175.41710 * 1 2 3 24 24 H 1.09001 * 109.47486 * 295.42211 * 1 2 3 25 25 H 1.09004 * 109.46827 * 55.41696 * 1 2 3 26 26 H 1.09003 * 109.47506 * 239.99640 * 2 1 3 27 27 H 1.08999 * 109.47158 * 119.99812 * 2 1 3 28 28 H 0.96998 * 120.00223 * 180.02562 * 8 7 5 29 29 H 1.00899 * 111.00032 * 280.20014 * 13 3 2 30 30 H 1.09007 * 109.51760 * 303.05899 * 16 14 13 31 31 H 1.08991 * 109.52037 * 63.24305 * 16 14 13 32 32 H 1.09004 * 109.48201 * 177.58767 * 17 16 14 33 33 H 1.08997 * 109.47895 * 297.62517 * 17 16 14 34 34 H 1.09005 * 109.47091 * 179.97438 * 21 19 18 35 35 H 1.09006 * 109.47115 * 299.93588 * 21 19 18 36 36 H 1.08990 * 109.47588 * 59.93568 * 21 19 18 37 37 H 1.09000 * 109.51777 * 182.48674 * 22 19 18 38 38 H 1.09003 * 109.57359 * 62.33548 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6042 1.9821 0.8409 5 6 3.5417 1.4443 0.1260 6 1 4.1482 1.8884 -0.6495 7 6 4.1415 0.8790 1.2314 8 7 5.4520 0.8810 1.3416 9 14 3.0925 0.1103 2.5724 10 1 2.8721 -1.3260 2.2662 11 1 3.7879 0.2369 3.8784 12 1 1.7838 0.8089 2.6386 13 7 1.6534 2.0986 -1.2562 14 6 1.6029 3.5577 -1.0942 15 1 2.3794 3.8743 -0.3979 16 6 0.2301 3.9659 -0.5509 17 6 0.1593 5.4925 -0.4599 18 8 0.4038 6.0570 -1.7498 19 6 1.6913 5.7482 -2.2874 20 1 1.8052 6.2304 -3.2583 21 6 2.7766 6.2548 -1.3355 22 6 1.8236 4.2319 -2.4518 23 1 -0.3633 -1.0244 -0.0821 24 1 -0.3634 0.4412 0.9281 25 1 -0.3633 0.5833 -0.8461 26 1 1.8934 -0.5139 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 5.8739 0.4830 2.1191 29 1 2.2764 1.8393 -2.0063 30 1 -0.5493 3.6044 -1.2219 31 1 0.0877 3.5349 0.4399 32 1 -0.8306 5.7905 -0.1144 33 1 0.9125 5.8500 0.2421 34 1 3.7586 6.0188 -1.7455 35 1 2.6822 7.3345 -1.2185 36 1 2.6623 5.7729 -0.3646 37 1 2.8208 3.9912 -2.8202 38 1 1.0772 3.8750 -3.1614 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000226595511.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:53:04 Heat of formation + Delta-G solvation = -58.932591 kcal Electronic energy + Delta-G solvation = -17028.361949 eV Core-core repulsion = 14484.237233 eV Total energy + Delta-G solvation = -2544.124716 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.54776 -36.46127 -33.48750 -32.06691 -31.79095 -29.91973 -27.73838 -26.27111 -23.34896 -22.78868 -21.83236 -19.75607 -18.85432 -17.02252 -16.23105 -15.76909 -15.10130 -14.72997 -14.27587 -13.86632 -13.65455 -13.08125 -12.86297 -12.75386 -12.33871 -12.02732 -11.74125 -11.62381 -11.48126 -11.36673 -10.93331 -10.87850 -10.68744 -10.39801 -10.15960 -9.77450 -9.70262 -9.51326 -9.29149 -9.12653 -8.59949 -7.36719 -6.15713 -4.16577 3.23438 3.33944 3.36178 4.05912 4.34246 4.90831 5.01679 5.17461 5.18166 5.27616 5.40218 5.59776 5.62527 5.73221 5.82160 5.95554 5.99922 6.04849 6.08120 6.19366 6.25119 6.27995 6.34937 6.43877 6.51839 6.68199 6.72976 6.80373 6.99443 7.10774 7.26759 7.44020 7.55593 8.04203 8.37683 8.47065 8.86711 9.48128 10.97143 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.029220 B = 0.008855 C = 0.007823 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 958.014201 B = 3161.360772 C = 3578.219074 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.116 4.116 3 C 0.184 3.816 4 H 0.032 0.968 5 C -0.546 4.546 6 H 0.071 0.929 7 C 0.073 3.927 8 N -0.898 5.898 9 Si 0.889 3.111 10 H -0.278 1.278 11 H -0.299 1.299 12 H -0.265 1.265 13 N -0.676 5.676 14 C 0.090 3.910 15 H 0.056 0.944 16 C -0.141 4.141 17 C 0.058 3.942 18 O -0.383 6.383 19 C 0.091 3.909 20 H 0.096 0.904 21 C -0.188 4.188 22 C -0.149 4.149 23 H 0.032 0.968 24 H 0.037 0.963 25 H 0.064 0.936 26 H 0.056 0.944 27 H 0.044 0.956 28 H 0.264 0.736 29 H 0.334 0.666 30 H 0.070 0.930 31 H 0.068 0.932 32 H 0.087 0.913 33 H 0.051 0.949 34 H 0.067 0.933 35 H 0.057 0.943 36 H 0.068 0.932 37 H 0.070 0.930 38 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.656 6.818 -4.211 11.796 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.154 4.154 3 C 0.074 3.926 4 H 0.049 0.951 5 C -0.584 4.584 6 H 0.090 0.910 7 C -0.130 4.130 8 N -0.536 5.536 9 Si 0.720 3.280 10 H -0.205 1.205 11 H -0.226 1.226 12 H -0.190 1.190 13 N -0.306 5.306 14 C -0.020 4.020 15 H 0.073 0.927 16 C -0.179 4.179 17 C -0.019 4.019 18 O -0.302 6.302 19 C 0.033 3.967 20 H 0.114 0.886 21 C -0.245 4.245 22 C -0.187 4.187 23 H 0.051 0.949 24 H 0.056 0.944 25 H 0.083 0.917 26 H 0.075 0.925 27 H 0.062 0.938 28 H 0.074 0.926 29 H 0.152 0.848 30 H 0.089 0.911 31 H 0.086 0.914 32 H 0.105 0.895 33 H 0.069 0.931 34 H 0.086 0.914 35 H 0.076 0.924 36 H 0.087 0.913 37 H 0.088 0.912 38 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -9.310 6.786 -4.086 12.224 hybrid contribution 0.903 -0.595 1.069 1.521 sum -8.408 6.191 -3.017 10.868 Atomic orbital electron populations 1.21744 0.97575 0.99501 1.01304 1.21812 0.93854 0.99405 1.00322 1.19590 0.94114 0.90558 0.88307 0.95057 1.21748 0.90589 1.39042 1.07042 0.91048 1.25010 0.94760 0.95305 0.97943 1.69915 1.08897 1.45039 1.29706 0.86820 0.80599 0.79911 0.80699 1.20467 1.22631 1.18981 1.60777 1.56174 1.05108 1.08522 1.21380 0.95839 0.89567 0.95257 0.92654 1.22193 0.98776 0.94841 1.02088 1.22603 1.00861 0.93316 0.85160 1.87909 1.34165 1.74170 1.33930 1.22113 0.83098 0.94674 0.96838 0.88577 1.22466 0.99421 1.01226 1.01380 1.22357 1.02400 0.95191 0.98735 0.94850 0.94392 0.91693 0.92474 0.93818 0.92649 0.84832 0.91079 0.91352 0.89454 0.93110 0.91446 0.92386 0.91342 0.91168 0.90897 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.65 9.85 37.16 0.37 -2.28 16 2 C -0.12 -2.52 5.11 -26.73 -0.14 -2.65 16 3 C 0.18 4.20 1.39 -68.86 -0.10 4.10 16 4 H 0.03 0.76 6.25 -51.93 -0.32 0.43 16 5 C -0.55 -14.78 8.79 -34.44 -0.30 -15.08 16 6 H 0.07 2.10 8.00 -52.48 -0.42 1.68 16 7 C 0.07 2.06 5.45 -17.82 -0.10 1.96 16 8 N -0.90 -27.06 13.96 55.43 0.77 -26.29 16 9 Si 0.89 21.90 24.41 -169.99 -4.15 17.75 16 10 H -0.28 -6.71 6.83 56.52 0.39 -6.32 16 11 H -0.30 -7.39 7.11 56.52 0.40 -6.99 16 12 H -0.26 -6.27 6.53 56.52 0.37 -5.90 16 13 N -0.68 -13.26 5.43 -100.76 -0.55 -13.80 16 14 C 0.09 1.59 2.07 -67.53 -0.14 1.45 16 15 H 0.06 1.13 6.07 -51.93 -0.32 0.81 16 16 C -0.14 -2.25 5.62 -26.59 -0.15 -2.40 16 17 C 0.06 0.81 6.52 37.20 0.24 1.06 16 18 O -0.38 -5.74 10.60 -35.23 -0.37 -6.11 16 19 C 0.09 1.26 3.91 -26.68 -0.10 1.15 16 20 H 0.10 1.16 8.14 -51.93 -0.42 0.73 16 21 C -0.19 -2.54 8.65 37.16 0.32 -2.22 16 22 C -0.15 -2.24 4.91 -26.59 -0.13 -2.37 16 23 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 24 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 25 H 0.06 1.15 7.63 -51.93 -0.40 0.76 16 26 H 0.06 1.23 8.14 -51.93 -0.42 0.80 16 27 H 0.04 1.01 3.21 -51.93 -0.17 0.85 16 28 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 29 H 0.33 6.62 8.08 -39.29 -0.32 6.30 16 30 H 0.07 1.14 8.14 -51.92 -0.42 0.72 16 31 H 0.07 1.14 7.50 -51.93 -0.39 0.76 16 32 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 33 H 0.05 0.71 6.34 -51.93 -0.33 0.38 16 34 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 35 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 36 H 0.07 1.03 4.98 -51.93 -0.26 0.77 16 37 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 38 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 LS Contribution 284.94 15.07 4.29 4.29 Total: -1.00 -28.89 284.94 -6.56 -35.45 By element: Atomic # 1 Polarization: 12.32 SS G_CDS: -6.33 Total: 5.99 kcal Atomic # 6 Polarization: -17.06 SS G_CDS: -0.23 Total: -17.28 kcal Atomic # 7 Polarization: -40.32 SS G_CDS: 0.23 Total: -40.09 kcal Atomic # 8 Polarization: -5.74 SS G_CDS: -0.37 Total: -6.11 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -4.15 Total: 17.75 kcal Total LS contribution 4.29 Total: 4.29 kcal Total: -28.89 -6.56 -35.45 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000226595511.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.485 kcal (2) G-P(sol) polarization free energy of solvation -28.890 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.374 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.558 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.448 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.933 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds