Wall clock time and date at job start Sun Mar 29 2020 21:53:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.47406 * 2 1 4 4 H 1.09003 * 109.47310 * 54.90561 * 3 2 1 5 5 C 1.50694 * 109.47156 * 174.91096 * 3 2 1 6 6 H 1.08006 * 120.00081 * 119.99846 * 5 3 2 7 7 C 1.37876 * 120.00181 * 299.99465 * 5 3 2 8 8 N 1.31513 * 120.00395 * 180.02562 * 7 5 3 9 9 Si 1.86807 * 119.99800 * 0.02562 * 7 5 3 10 10 H 1.48502 * 109.47002 * 89.99816 * 9 7 5 11 11 H 1.48494 * 109.47087 * 209.99582 * 9 7 5 12 12 H 1.48503 * 109.46822 * 329.99866 * 9 7 5 13 13 N 1.46903 * 109.46861 * 294.90699 * 3 2 1 14 14 C 1.46901 * 110.99877 * 156.23886 * 13 3 2 15 15 H 1.09000 * 109.54108 * 34.62697 * 14 13 3 16 16 C 1.53178 * 109.54834 * 274.44993 * 14 13 3 17 17 C 1.53086 * 109.16429 * 183.15355 * 16 14 13 18 18 O 1.42903 * 109.41404 * 57.60644 * 17 16 14 19 19 C 1.42904 * 114.10164 * 298.83912 * 18 17 16 20 20 H 1.09000 * 109.49378 * 181.14522 * 19 18 17 21 21 C 1.52997 * 109.47955 * 301.18245 * 19 18 17 22 22 C 1.53097 * 109.40931 * 61.15796 * 19 18 17 23 23 H 1.09000 * 109.47092 * 175.41710 * 1 2 3 24 24 H 1.09001 * 109.47486 * 295.42211 * 1 2 3 25 25 H 1.09004 * 109.46827 * 55.41696 * 1 2 3 26 26 H 1.09003 * 109.47506 * 239.99640 * 2 1 3 27 27 H 1.08999 * 109.47158 * 119.99812 * 2 1 3 28 28 H 0.96998 * 120.00223 * 180.02562 * 8 7 5 29 29 H 1.00899 * 111.00032 * 280.20014 * 13 3 2 30 30 H 1.09007 * 109.51760 * 303.05899 * 16 14 13 31 31 H 1.08991 * 109.52037 * 63.24305 * 16 14 13 32 32 H 1.09004 * 109.48201 * 177.58767 * 17 16 14 33 33 H 1.08997 * 109.47895 * 297.62517 * 17 16 14 34 34 H 1.09005 * 109.47091 * 179.97438 * 21 19 18 35 35 H 1.09006 * 109.47115 * 299.93588 * 21 19 18 36 36 H 1.08990 * 109.47588 * 59.93568 * 21 19 18 37 37 H 1.09000 * 109.51777 * 182.48674 * 22 19 18 38 38 H 1.09003 * 109.57359 * 62.33548 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6042 1.9821 0.8409 5 6 3.5417 1.4443 0.1260 6 1 4.1482 1.8884 -0.6495 7 6 4.1415 0.8790 1.2314 8 7 5.4520 0.8810 1.3416 9 14 3.0925 0.1103 2.5724 10 1 2.8721 -1.3260 2.2662 11 1 3.7879 0.2369 3.8784 12 1 1.7838 0.8089 2.6386 13 7 1.6534 2.0986 -1.2562 14 6 1.6029 3.5577 -1.0942 15 1 2.3794 3.8743 -0.3979 16 6 0.2301 3.9659 -0.5509 17 6 0.1593 5.4925 -0.4599 18 8 0.4038 6.0570 -1.7498 19 6 1.6913 5.7482 -2.2874 20 1 1.8052 6.2304 -3.2583 21 6 2.7766 6.2548 -1.3355 22 6 1.8236 4.2319 -2.4518 23 1 -0.3633 -1.0244 -0.0821 24 1 -0.3634 0.4412 0.9281 25 1 -0.3633 0.5833 -0.8461 26 1 1.8934 -0.5139 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 5.8739 0.4830 2.1191 29 1 2.2764 1.8393 -2.0063 30 1 -0.5493 3.6044 -1.2219 31 1 0.0877 3.5349 0.4399 32 1 -0.8306 5.7905 -0.1144 33 1 0.9125 5.8500 0.2421 34 1 3.7586 6.0188 -1.7455 35 1 2.6822 7.3345 -1.2185 36 1 2.6623 5.7729 -0.3646 37 1 2.8208 3.9912 -2.8202 38 1 1.0772 3.8750 -3.1614 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000226595511.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:53:04 Heat of formation + Delta-G solvation = -79.070348 kcal Electronic energy + Delta-G solvation = -17029.235188 eV Core-core repulsion = 14484.237233 eV Total energy + Delta-G solvation = -2544.997954 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.79012 -38.10916 -35.07931 -33.95956 -33.07755 -31.37134 -29.18726 -27.94522 -24.65711 -24.44294 -23.23655 -21.54812 -20.10963 -19.06392 -17.54732 -17.12841 -16.78615 -16.22836 -15.45981 -15.41785 -15.32308 -14.74380 -14.40042 -14.21399 -13.81190 -13.47729 -13.30131 -13.17968 -13.02895 -12.66282 -12.53077 -12.32636 -12.12008 -12.05601 -11.63768 -11.46717 -11.31726 -11.25720 -10.90073 -10.70306 -10.43328 -9.07976 -8.35381 -6.39797 1.27317 1.31927 1.42404 2.27174 2.94002 3.00382 3.44423 3.81075 3.97441 4.07916 4.21600 4.34346 4.37808 4.45087 4.46439 4.55470 4.58653 4.67367 4.77550 4.81346 4.93501 4.99295 5.03169 5.11915 5.16026 5.21927 5.23028 5.30381 5.44692 5.46124 5.56440 5.63569 6.09107 6.29771 6.41851 6.63531 6.79536 7.29235 8.80715 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.029220 B = 0.008855 C = 0.007823 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 958.014201 B = 3161.360772 C = 3578.219074 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.118 4.118 3 C 0.192 3.808 4 H 0.023 0.977 5 C -0.542 4.542 6 H 0.033 0.967 7 C 0.016 3.984 8 N -0.946 5.946 9 Si 0.948 3.052 10 H -0.267 1.267 11 H -0.301 1.301 12 H -0.248 1.248 13 N -0.665 5.665 14 C 0.086 3.914 15 H 0.023 0.977 16 C -0.134 4.134 17 C 0.060 3.940 18 O -0.387 6.387 19 C 0.092 3.908 20 H 0.122 0.878 21 C -0.185 4.185 22 C -0.142 4.142 23 H 0.056 0.944 24 H 0.041 0.959 25 H 0.070 0.930 26 H 0.054 0.946 27 H 0.031 0.969 28 H 0.265 0.735 29 H 0.332 0.668 30 H 0.075 0.925 31 H 0.059 0.941 32 H 0.113 0.887 33 H 0.049 0.951 34 H 0.066 0.934 35 H 0.074 0.926 36 H 0.047 0.953 37 H 0.066 0.934 38 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.011 7.097 -4.428 13.828 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.156 4.156 3 C 0.082 3.918 4 H 0.041 0.959 5 C -0.581 4.581 6 H 0.052 0.948 7 C -0.182 4.182 8 N -0.586 5.586 9 Si 0.775 3.225 10 H -0.193 1.193 11 H -0.229 1.229 12 H -0.172 1.172 13 N -0.294 5.294 14 C -0.024 4.024 15 H 0.041 0.959 16 C -0.172 4.172 17 C -0.017 4.017 18 O -0.306 6.306 19 C 0.034 3.966 20 H 0.139 0.861 21 C -0.242 4.242 22 C -0.180 4.180 23 H 0.075 0.925 24 H 0.060 0.940 25 H 0.089 0.911 26 H 0.073 0.927 27 H 0.049 0.951 28 H 0.074 0.926 29 H 0.148 0.852 30 H 0.094 0.906 31 H 0.078 0.922 32 H 0.131 0.869 33 H 0.067 0.933 34 H 0.085 0.915 35 H 0.092 0.908 36 H 0.066 0.934 37 H 0.084 0.916 38 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -11.690 7.075 -4.321 14.331 hybrid contribution 1.702 -0.624 1.054 2.097 sum -9.989 6.451 -3.266 12.331 Atomic orbital electron populations 1.21649 0.94525 1.01244 1.01768 1.21760 0.96553 0.97707 0.99586 1.19419 0.90983 0.91940 0.89463 0.95903 1.22064 0.92871 1.37520 1.05687 0.94840 1.25834 0.95768 0.96138 1.00488 1.70057 1.10839 1.46917 1.30770 0.85858 0.79502 0.79642 0.77466 1.19292 1.22870 1.17187 1.60830 1.55268 1.06348 1.06923 1.21461 0.96184 0.88415 0.96325 0.95883 1.22129 0.97325 0.96356 1.01436 1.22662 1.02276 0.91774 0.85025 1.87912 1.34488 1.74089 1.34142 1.22217 0.82798 0.93609 0.97953 0.86069 1.22439 0.99476 1.02071 1.00261 1.22309 1.02410 0.96232 0.97094 0.92518 0.94034 0.91099 0.92746 0.95081 0.92633 0.85151 0.90602 0.92249 0.86930 0.93317 0.91500 0.90753 0.93404 0.91565 0.90117 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.52 9.85 71.98 0.71 -3.81 16 2 C -0.12 -4.93 5.11 30.59 0.16 -4.77 16 3 C 0.19 8.71 1.39 44.17 0.06 8.77 16 4 H 0.02 1.09 6.25 -2.39 -0.01 1.08 16 5 C -0.54 -30.14 8.79 25.60 0.22 -29.92 16 6 H 0.03 2.06 8.00 -2.91 -0.02 2.04 16 7 C 0.02 0.91 5.45 84.65 0.46 1.38 16 8 N -0.95 -58.72 13.96 21.45 0.30 -58.42 16 9 Si 0.95 45.10 24.41 68.60 1.67 46.77 16 10 H -0.27 -12.16 6.83 99.48 0.68 -11.48 16 11 H -0.30 -14.31 7.11 99.48 0.71 -13.61 16 12 H -0.25 -11.00 6.53 99.48 0.65 -10.35 16 13 N -0.67 -25.78 5.43 -472.70 -2.57 -28.35 16 14 C 0.09 3.02 2.07 45.03 0.09 3.12 16 15 H 0.02 0.97 6.07 -2.39 -0.01 0.95 16 16 C -0.13 -4.07 5.62 30.68 0.17 -3.90 16 17 C 0.06 1.56 6.52 72.01 0.47 2.03 16 18 O -0.39 -10.62 10.60 -148.98 -1.58 -12.20 16 19 C 0.09 2.37 3.91 30.63 0.12 2.49 16 20 H 0.12 2.56 8.14 -2.39 -0.02 2.54 16 21 C -0.19 -4.85 8.65 71.98 0.62 -4.23 16 22 C -0.14 -4.14 4.91 30.68 0.15 -3.99 16 23 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 24 H 0.04 1.36 8.14 -2.39 -0.02 1.34 16 25 H 0.07 2.29 7.63 -2.38 -0.02 2.28 16 26 H 0.05 2.27 8.14 -2.39 -0.02 2.25 16 27 H 0.03 1.38 3.21 -2.39 -0.01 1.37 16 28 H 0.26 15.48 8.31 -92.71 -0.77 14.71 16 29 H 0.33 13.17 8.08 -89.69 -0.73 12.45 16 30 H 0.08 2.24 8.14 -2.38 -0.02 2.22 16 31 H 0.06 1.90 7.50 -2.39 -0.02 1.89 16 32 H 0.11 2.39 8.14 -2.39 -0.02 2.37 16 33 H 0.05 1.30 6.34 -2.39 -0.02 1.29 16 34 H 0.07 1.73 8.14 -2.38 -0.02 1.71 16 35 H 0.07 1.68 8.14 -2.38 -0.02 1.67 16 36 H 0.05 1.44 4.98 -2.39 -0.01 1.43 16 37 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 38 H 0.08 2.24 8.14 -2.39 -0.02 2.22 16 Total: -1.00 -62.41 284.94 1.29 -61.12 By element: Atomic # 1 Polarization: 23.69 SS G_CDS: 0.22 Total: 23.91 kcal Atomic # 6 Polarization: -36.09 SS G_CDS: 3.24 Total: -32.85 kcal Atomic # 7 Polarization: -84.50 SS G_CDS: -2.27 Total: -86.77 kcal Atomic # 8 Polarization: -10.62 SS G_CDS: -1.58 Total: -12.20 kcal Atomic # 14 Polarization: 45.10 SS G_CDS: 1.67 Total: 46.77 kcal Total: -62.41 1.29 -61.12 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000226595511.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.950 kcal (2) G-P(sol) polarization free energy of solvation -62.410 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.361 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.290 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.120 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.070 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds