Wall clock time and date at job start Sun Mar 29 2020 21:53:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53002 * 109.47067 * 2 1 4 4 H 1.08998 * 109.47138 * 177.53933 * 3 2 1 5 5 C 1.50701 * 109.46929 * 57.54108 * 3 2 1 6 6 H 1.08001 * 120.00027 * 239.99496 * 5 3 2 7 7 C 1.37880 * 119.99629 * 60.00194 * 5 3 2 8 8 N 1.31513 * 120.00441 * 359.97438 * 7 5 3 9 9 Si 1.86804 * 119.99590 * 179.97438 * 7 5 3 10 10 H 1.48495 * 109.47406 * 59.99997 * 9 7 5 11 11 H 1.48508 * 109.46813 * 179.97438 * 9 7 5 12 12 H 1.48504 * 109.47198 * 299.99551 * 9 7 5 13 13 N 1.46899 * 109.47306 * 297.54211 * 3 2 1 14 14 C 1.46900 * 111.00065 * 274.36409 * 13 3 2 15 15 H 1.09003 * 109.53921 * 34.95889 * 14 13 3 16 16 C 1.53178 * 109.54301 * 274.77854 * 14 13 3 17 17 C 1.53095 * 109.15877 * 183.15458 * 16 14 13 18 18 O 1.42898 * 109.41863 * 57.60742 * 17 16 14 19 19 C 1.42898 * 114.10144 * 298.84232 * 18 17 16 20 20 H 1.08999 * 109.48721 * 181.15232 * 19 18 17 21 21 C 1.53005 * 109.47927 * 301.17689 * 19 18 17 22 22 C 1.53100 * 109.41349 * 61.15271 * 19 18 17 23 23 H 1.08998 * 109.46881 * 174.53143 * 1 2 3 24 24 H 1.09001 * 109.46872 * 294.53030 * 1 2 3 25 25 H 1.08996 * 109.46988 * 54.52945 * 1 2 3 26 26 H 1.08992 * 109.47241 * 120.00007 * 2 1 3 27 27 H 1.09000 * 109.46858 * 240.00114 * 2 1 3 28 28 H 0.96995 * 119.99874 * 179.97438 * 8 7 5 29 29 H 1.00897 * 111.00364 * 150.40645 * 13 3 2 30 30 H 1.08999 * 109.52177 * 303.05815 * 16 14 13 31 31 H 1.09001 * 109.51859 * 63.24921 * 16 14 13 32 32 H 1.08997 * 109.47412 * 177.59208 * 17 16 14 33 33 H 1.09006 * 109.47854 * 297.61187 * 17 16 14 34 34 H 1.09002 * 109.47191 * 59.99787 * 21 19 18 35 35 H 1.08996 * 109.47069 * 180.02562 * 21 19 18 36 36 H 1.09005 * 109.46440 * 299.99608 * 21 19 18 37 37 H 1.09007 * 109.52135 * 182.48700 * 22 19 18 38 38 H 1.09000 * 109.52128 * 62.30380 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1291 1.4428 0.0441 5 6 1.4885 2.1703 1.1989 6 1 0.8724 3.0467 1.0622 7 6 1.7706 1.7172 2.4702 8 7 2.5206 0.6497 2.6366 9 14 1.0876 2.6197 3.9563 10 1 -0.3962 2.6198 3.8965 11 1 1.5324 1.9367 5.1977 12 1 1.5832 4.0196 3.9562 13 7 1.5995 2.1177 -1.2280 14 6 2.5368 1.8681 -2.3313 15 1 2.9389 0.8585 -2.2467 16 6 3.6825 2.8829 -2.2697 17 6 4.6111 2.6655 -3.4673 18 8 3.8623 2.7903 -4.6779 19 6 2.8071 1.8361 -4.8123 20 1 2.3012 1.9854 -5.7662 21 6 3.3882 0.4218 -4.7589 22 6 1.8059 2.0202 -3.6688 23 1 -0.3633 -1.0230 -0.0979 24 1 -0.3633 0.4267 0.9349 25 1 -0.3633 0.5963 -0.8369 26 1 1.8934 -0.5138 0.8899 27 1 1.8933 -0.5138 -0.8900 28 1 2.7193 0.3313 3.5310 29 1 1.4786 3.1073 -1.0731 30 1 3.2760 3.8937 -2.3028 31 1 4.2423 2.7445 -1.3447 32 1 5.4047 3.4125 -3.4521 33 1 5.0489 1.6688 -3.4115 34 1 3.8937 0.2724 -3.8048 35 1 2.5833 -0.3059 -4.8619 36 1 4.1018 0.2913 -5.5725 37 1 1.0236 1.2648 -3.7444 38 1 1.3614 3.0136 -3.7301 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000226595517.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:53:06 Heat of formation + Delta-G solvation = -63.863011 kcal Electronic energy + Delta-G solvation = -16931.085501 eV Core-core repulsion = 14386.746987 eV Total energy + Delta-G solvation = -2544.338515 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.58000 -36.29923 -33.50857 -32.07566 -31.23413 -29.44508 -27.63999 -25.75665 -23.25528 -23.11759 -22.26619 -19.17658 -18.89762 -16.67467 -15.88491 -15.73996 -15.05285 -14.40046 -14.20919 -13.79134 -13.48170 -13.22675 -12.76026 -12.60424 -12.15182 -11.88304 -11.70304 -11.52873 -11.05718 -10.93840 -10.85365 -10.76883 -10.63201 -10.37544 -10.20512 -9.79492 -9.57319 -9.40610 -9.21127 -8.78270 -8.47249 -7.20242 -6.02544 -4.07665 3.29850 3.34720 3.37437 4.04324 4.39405 4.99074 5.05151 5.16605 5.21050 5.29427 5.38342 5.56271 5.59272 5.68504 5.76469 5.91324 6.04924 6.17711 6.23012 6.25809 6.40855 6.52463 6.56823 6.68611 6.70899 6.86532 7.23187 7.32963 7.42845 7.50906 7.73790 7.79963 7.84535 8.26047 8.40679 8.68050 9.02006 9.57108 11.03489 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.039607 B = 0.007134 C = 0.006675 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 706.771235 B = 3924.180204 C = 4193.970045 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.101 4.101 3 C 0.217 3.783 4 H 0.000 1.000 5 C -0.513 4.513 6 H 0.057 0.943 7 C 0.064 3.936 8 N -0.889 5.889 9 Si 0.892 3.108 10 H -0.277 1.277 11 H -0.288 1.288 12 H -0.278 1.278 13 N -0.680 5.680 14 C 0.088 3.912 15 H 0.072 0.928 16 C -0.183 4.183 17 C 0.062 3.938 18 O -0.383 6.383 19 C 0.086 3.914 20 H 0.096 0.904 21 C -0.186 4.186 22 C -0.135 4.135 23 H 0.012 0.988 24 H 0.051 0.949 25 H 0.046 0.954 26 H 0.084 0.916 27 H 0.008 0.992 28 H 0.261 0.739 29 H 0.331 0.669 30 H 0.067 0.933 31 H 0.074 0.926 32 H 0.086 0.914 33 H 0.050 0.950 34 H 0.064 0.936 35 H 0.066 0.934 36 H 0.057 0.943 37 H 0.074 0.926 38 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.692 0.902 -11.017 11.183 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.140 4.140 3 C 0.109 3.891 4 H 0.018 0.982 5 C -0.552 4.552 6 H 0.076 0.924 7 C -0.138 4.138 8 N -0.528 5.528 9 Si 0.720 3.280 10 H -0.202 1.202 11 H -0.214 1.214 12 H -0.204 1.204 13 N -0.309 5.309 14 C -0.023 4.023 15 H 0.091 0.909 16 C -0.222 4.222 17 C -0.015 4.015 18 O -0.302 6.302 19 C 0.028 3.972 20 H 0.114 0.886 21 C -0.243 4.243 22 C -0.173 4.173 23 H 0.031 0.969 24 H 0.071 0.929 25 H 0.065 0.935 26 H 0.102 0.898 27 H 0.027 0.973 28 H 0.071 0.929 29 H 0.148 0.852 30 H 0.085 0.915 31 H 0.092 0.908 32 H 0.104 0.896 33 H 0.068 0.932 34 H 0.083 0.917 35 H 0.085 0.915 36 H 0.076 0.924 37 H 0.093 0.907 38 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 1.364 0.399 -11.156 11.246 hybrid contribution 0.377 0.764 1.456 1.687 sum 1.741 1.163 -9.700 9.923 Atomic orbital electron populations 1.21435 0.97520 0.97062 1.01586 1.21431 0.95115 0.98312 0.99122 1.19107 0.93287 0.91540 0.85148 0.98232 1.21155 1.31635 1.11942 0.90426 0.92433 1.24876 0.95100 0.95008 0.98808 1.69874 1.37543 1.23158 1.22243 0.86657 0.79502 0.79765 0.82056 1.20219 1.21354 1.20405 1.60753 1.46877 1.15927 1.07375 1.21561 0.90766 0.97886 0.92054 0.90940 1.22946 0.99343 1.01145 0.98803 1.22521 0.93673 1.01024 0.84307 1.87913 1.46690 1.55948 1.39685 1.22197 0.87966 0.88132 0.98881 0.88613 1.22450 1.01874 0.97434 1.02550 1.22178 0.98178 1.02697 0.94243 0.96934 0.92946 0.93469 0.89764 0.97322 0.92932 0.85172 0.91464 0.90764 0.89617 0.93161 0.91665 0.91498 0.92412 0.90722 0.91571 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.67 9.45 37.16 0.35 -2.32 16 2 C -0.10 -2.44 5.55 -26.73 -0.15 -2.59 16 3 C 0.22 5.27 2.11 -68.86 -0.15 5.13 16 4 H 0.00 0.00 7.16 -51.93 -0.37 -0.37 16 5 C -0.51 -13.61 7.31 -34.44 -0.25 -13.86 16 6 H 0.06 1.52 7.61 -52.49 -0.40 1.12 16 7 C 0.06 1.73 5.30 -17.82 -0.09 1.63 16 8 N -0.89 -24.96 11.34 55.43 0.63 -24.33 16 9 Si 0.89 21.07 29.54 -169.99 -5.02 16.05 16 10 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 11 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 12 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 13 N -0.68 -13.98 5.31 -100.76 -0.53 -14.51 16 14 C 0.09 1.54 2.04 -67.53 -0.14 1.41 16 15 H 0.07 1.36 5.64 -51.93 -0.29 1.06 16 16 C -0.18 -2.98 5.38 -26.59 -0.14 -3.12 16 17 C 0.06 0.88 6.51 37.21 0.24 1.12 16 18 O -0.38 -5.71 10.60 -35.23 -0.37 -6.08 16 19 C 0.09 1.15 3.91 -26.68 -0.10 1.05 16 20 H 0.10 1.12 8.14 -51.93 -0.42 0.70 16 21 C -0.19 -2.29 8.65 37.16 0.32 -1.96 16 22 C -0.13 -2.02 5.25 -26.59 -0.14 -2.16 16 23 H 0.01 0.24 8.14 -51.93 -0.42 -0.18 16 24 H 0.05 1.27 7.36 -51.93 -0.38 0.89 16 25 H 0.05 1.02 7.52 -51.93 -0.39 0.63 16 26 H 0.08 2.25 6.14 -51.93 -0.32 1.94 16 27 H 0.01 0.19 7.45 -51.93 -0.39 -0.20 16 28 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 29 H 0.33 6.81 7.92 -39.29 -0.31 6.50 16 30 H 0.07 1.10 8.09 -51.93 -0.42 0.68 16 31 H 0.07 1.32 7.50 -51.93 -0.39 0.93 16 32 H 0.09 1.08 8.14 -51.93 -0.42 0.66 16 33 H 0.05 0.69 6.34 -51.93 -0.33 0.36 16 34 H 0.06 0.88 4.98 -51.93 -0.26 0.62 16 35 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 36 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 38 H 0.07 1.01 8.14 -51.93 -0.42 0.58 16 LS Contribution 288.61 15.07 4.35 4.35 Total: -1.00 -27.39 288.61 -7.55 -34.94 By element: Atomic # 1 Polarization: 11.61 SS G_CDS: -6.34 Total: 5.26 kcal Atomic # 6 Polarization: -15.43 SS G_CDS: -0.25 Total: -15.68 kcal Atomic # 7 Polarization: -38.94 SS G_CDS: 0.09 Total: -38.84 kcal Atomic # 8 Polarization: -5.71 SS G_CDS: -0.37 Total: -6.08 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.05 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -27.39 -7.55 -34.94 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000226595517.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.927 kcal (2) G-P(sol) polarization free energy of solvation -27.390 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.317 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.546 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.936 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.863 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds