Wall clock time and date at job start Sun Mar 29 2020 21:53:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53002 * 109.47067 * 2 1 4 4 H 1.08998 * 109.47138 * 177.53933 * 3 2 1 5 5 C 1.50701 * 109.46929 * 57.54108 * 3 2 1 6 6 H 1.08001 * 120.00027 * 239.99496 * 5 3 2 7 7 C 1.37880 * 119.99629 * 60.00194 * 5 3 2 8 8 N 1.31513 * 120.00441 * 359.97438 * 7 5 3 9 9 Si 1.86804 * 119.99590 * 179.97438 * 7 5 3 10 10 H 1.48495 * 109.47406 * 59.99997 * 9 7 5 11 11 H 1.48508 * 109.46813 * 179.97438 * 9 7 5 12 12 H 1.48504 * 109.47198 * 299.99551 * 9 7 5 13 13 N 1.46899 * 109.47306 * 297.54211 * 3 2 1 14 14 C 1.46900 * 111.00065 * 274.36409 * 13 3 2 15 15 H 1.09003 * 109.53921 * 34.95889 * 14 13 3 16 16 C 1.53178 * 109.54301 * 274.77854 * 14 13 3 17 17 C 1.53095 * 109.15877 * 183.15458 * 16 14 13 18 18 O 1.42898 * 109.41863 * 57.60742 * 17 16 14 19 19 C 1.42898 * 114.10144 * 298.84232 * 18 17 16 20 20 H 1.08999 * 109.48721 * 181.15232 * 19 18 17 21 21 C 1.53005 * 109.47927 * 301.17689 * 19 18 17 22 22 C 1.53100 * 109.41349 * 61.15271 * 19 18 17 23 23 H 1.08998 * 109.46881 * 174.53143 * 1 2 3 24 24 H 1.09001 * 109.46872 * 294.53030 * 1 2 3 25 25 H 1.08996 * 109.46988 * 54.52945 * 1 2 3 26 26 H 1.08992 * 109.47241 * 120.00007 * 2 1 3 27 27 H 1.09000 * 109.46858 * 240.00114 * 2 1 3 28 28 H 0.96995 * 119.99874 * 179.97438 * 8 7 5 29 29 H 1.00897 * 111.00364 * 150.40645 * 13 3 2 30 30 H 1.08999 * 109.52177 * 303.05815 * 16 14 13 31 31 H 1.09001 * 109.51859 * 63.24921 * 16 14 13 32 32 H 1.08997 * 109.47412 * 177.59208 * 17 16 14 33 33 H 1.09006 * 109.47854 * 297.61187 * 17 16 14 34 34 H 1.09002 * 109.47191 * 59.99787 * 21 19 18 35 35 H 1.08996 * 109.47069 * 180.02562 * 21 19 18 36 36 H 1.09005 * 109.46440 * 299.99608 * 21 19 18 37 37 H 1.09007 * 109.52135 * 182.48700 * 22 19 18 38 38 H 1.09000 * 109.52128 * 62.30380 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1291 1.4428 0.0441 5 6 1.4885 2.1703 1.1989 6 1 0.8724 3.0467 1.0622 7 6 1.7706 1.7172 2.4702 8 7 2.5206 0.6497 2.6366 9 14 1.0876 2.6197 3.9563 10 1 -0.3962 2.6198 3.8965 11 1 1.5324 1.9367 5.1977 12 1 1.5832 4.0196 3.9562 13 7 1.5995 2.1177 -1.2280 14 6 2.5368 1.8681 -2.3313 15 1 2.9389 0.8585 -2.2467 16 6 3.6825 2.8829 -2.2697 17 6 4.6111 2.6655 -3.4673 18 8 3.8623 2.7903 -4.6779 19 6 2.8071 1.8361 -4.8123 20 1 2.3012 1.9854 -5.7662 21 6 3.3882 0.4218 -4.7589 22 6 1.8059 2.0202 -3.6688 23 1 -0.3633 -1.0230 -0.0979 24 1 -0.3633 0.4267 0.9349 25 1 -0.3633 0.5963 -0.8369 26 1 1.8934 -0.5138 0.8899 27 1 1.8933 -0.5138 -0.8900 28 1 2.7193 0.3313 3.5310 29 1 1.4786 3.1073 -1.0731 30 1 3.2760 3.8937 -2.3028 31 1 4.2423 2.7445 -1.3447 32 1 5.4047 3.4125 -3.4521 33 1 5.0489 1.6688 -3.4115 34 1 3.8937 0.2724 -3.8048 35 1 2.5833 -0.3059 -4.8619 36 1 4.1018 0.2913 -5.5725 37 1 1.0236 1.2648 -3.7444 38 1 1.3614 3.0136 -3.7301 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000226595517.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:53:06 Heat of formation + Delta-G solvation = -80.914545 kcal Electronic energy + Delta-G solvation = -16931.824911 eV Core-core repulsion = 14386.746987 eV Total energy + Delta-G solvation = -2545.077925 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.81298 -37.99248 -35.19029 -33.36337 -33.00617 -31.03186 -28.95168 -27.57001 -25.13943 -24.38279 -23.63651 -20.93258 -20.28858 -18.41520 -17.32243 -16.97053 -16.84736 -15.91623 -15.59697 -15.26091 -15.16309 -14.68787 -14.41213 -13.89860 -13.71996 -13.62173 -13.05142 -12.82016 -12.73366 -12.66783 -12.47557 -12.20653 -12.12450 -11.96514 -11.93134 -11.53704 -11.31686 -10.88450 -10.80430 -10.55049 -10.42507 -8.92686 -8.09725 -6.21319 1.41512 1.42752 1.49731 2.42015 2.94452 3.19126 3.58765 3.83957 3.94131 4.06242 4.22897 4.28004 4.46111 4.48727 4.58431 4.64901 4.75406 4.80366 4.81669 4.95066 4.96083 5.02293 5.16362 5.22882 5.25013 5.33279 5.41109 5.44920 5.59035 5.71787 5.83057 5.91684 6.28134 6.30700 6.52690 6.82591 7.05135 7.47458 8.95220 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.039607 B = 0.007134 C = 0.006675 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 706.771235 B = 3924.180204 C = 4193.970045 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.097 4.097 3 C 0.225 3.775 4 H -0.035 1.035 5 C -0.524 4.524 6 H 0.055 0.945 7 C 0.018 3.982 8 N -0.916 5.916 9 Si 0.951 3.049 10 H -0.272 1.272 11 H -0.286 1.286 12 H -0.273 1.273 13 N -0.676 5.676 14 C 0.087 3.913 15 H 0.059 0.941 16 C -0.177 4.177 17 C 0.067 3.933 18 O -0.390 6.390 19 C 0.086 3.914 20 H 0.121 0.879 21 C -0.183 4.183 22 C -0.126 4.126 23 H 0.033 0.967 24 H 0.029 0.971 25 H 0.054 0.946 26 H 0.055 0.945 27 H 0.019 0.981 28 H 0.260 0.740 29 H 0.330 0.670 30 H 0.066 0.934 31 H 0.051 0.949 32 H 0.104 0.896 33 H 0.055 0.945 34 H 0.048 0.952 35 H 0.076 0.924 36 H 0.071 0.929 37 H 0.077 0.923 38 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.152 1.282 -12.277 12.397 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.136 4.136 3 C 0.117 3.883 4 H -0.017 1.017 5 C -0.563 4.563 6 H 0.073 0.927 7 C -0.181 4.181 8 N -0.556 5.556 9 Si 0.777 3.223 10 H -0.197 1.197 11 H -0.212 1.212 12 H -0.198 1.198 13 N -0.305 5.305 14 C -0.023 4.023 15 H 0.077 0.923 16 C -0.217 4.217 17 C -0.010 4.010 18 O -0.309 6.309 19 C 0.028 3.972 20 H 0.138 0.862 21 C -0.240 4.240 22 C -0.165 4.165 23 H 0.053 0.947 24 H 0.048 0.952 25 H 0.073 0.927 26 H 0.073 0.927 27 H 0.038 0.962 28 H 0.069 0.931 29 H 0.147 0.853 30 H 0.085 0.915 31 H 0.070 0.930 32 H 0.122 0.878 33 H 0.073 0.927 34 H 0.067 0.933 35 H 0.095 0.905 36 H 0.090 0.910 37 H 0.096 0.904 38 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 0.821 0.787 -12.437 12.489 hybrid contribution 0.563 0.635 1.806 1.995 sum 1.384 1.422 -10.631 10.814 Atomic orbital electron populations 1.21295 0.96056 0.98406 1.00622 1.21309 0.96289 0.97816 0.98171 1.18859 0.91050 0.92077 0.86329 1.01713 1.21436 1.31411 1.11968 0.91468 0.92655 1.25594 0.95407 0.95703 1.01401 1.70009 1.38575 1.24360 1.22632 0.85719 0.78926 0.78754 0.78881 1.19749 1.21186 1.19834 1.60707 1.47729 1.15551 1.06514 1.21621 0.91003 0.97460 0.92259 0.92314 1.22841 0.99196 1.00620 0.99017 1.22515 0.93408 1.01997 0.83123 1.87915 1.47000 1.56559 1.39471 1.22344 0.87320 0.88450 0.99055 0.86152 1.22424 1.02398 0.97006 1.02191 1.22110 0.98456 1.02745 0.93161 0.94748 0.95151 0.92685 0.92673 0.96236 0.93066 0.85280 0.91503 0.93010 0.87816 0.92668 0.93302 0.90493 0.90994 0.90448 0.91631 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.71 9.45 71.98 0.68 -4.03 16 2 C -0.10 -4.71 5.55 30.60 0.17 -4.54 16 3 C 0.23 11.17 2.11 44.17 0.09 11.26 16 4 H -0.03 -1.93 7.16 -2.39 -0.02 -1.95 16 5 C -0.52 -28.12 7.31 25.60 0.19 -27.93 16 6 H 0.06 2.93 7.61 -2.91 -0.02 2.91 16 7 C 0.02 0.99 5.30 84.66 0.45 1.44 16 8 N -0.92 -52.38 11.34 21.45 0.24 -52.13 16 9 Si 0.95 43.34 29.54 68.60 2.03 45.36 16 10 H -0.27 -12.14 7.11 99.48 0.71 -11.44 16 11 H -0.29 -12.89 7.11 99.48 0.71 -12.18 16 12 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 13 N -0.68 -27.76 5.31 -472.70 -2.51 -30.27 16 14 C 0.09 3.01 2.04 45.03 0.09 3.10 16 15 H 0.06 2.20 5.64 -2.39 -0.01 2.19 16 16 C -0.18 -5.74 5.38 30.69 0.17 -5.57 16 17 C 0.07 1.80 6.51 72.01 0.47 2.27 16 18 O -0.39 -10.69 10.60 -148.98 -1.58 -12.26 16 19 C 0.09 2.07 3.91 30.63 0.12 2.19 16 20 H 0.12 2.37 8.14 -2.39 -0.02 2.35 16 21 C -0.18 -4.08 8.65 71.98 0.62 -3.46 16 22 C -0.13 -3.56 5.25 30.69 0.16 -3.40 16 23 H 0.03 1.34 8.14 -2.39 -0.02 1.32 16 24 H 0.03 1.44 7.36 -2.39 -0.02 1.43 16 25 H 0.05 2.32 7.52 -2.39 -0.02 2.30 16 26 H 0.05 3.01 6.14 -2.39 -0.01 3.00 16 27 H 0.02 0.87 7.45 -2.39 -0.02 0.85 16 28 H 0.26 14.27 8.31 -92.71 -0.77 13.50 16 29 H 0.33 13.58 7.92 -89.70 -0.71 12.87 16 30 H 0.07 2.15 8.09 -2.39 -0.02 2.13 16 31 H 0.05 1.89 7.50 -2.39 -0.02 1.88 16 32 H 0.10 2.42 8.14 -2.39 -0.02 2.40 16 33 H 0.06 1.44 6.34 -2.38 -0.02 1.43 16 34 H 0.05 1.25 4.98 -2.39 -0.01 1.24 16 35 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 36 H 0.07 1.40 8.14 -2.38 -0.02 1.38 16 37 H 0.08 2.15 8.14 -2.38 -0.02 2.13 16 38 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 Total: -1.00 -58.02 288.61 1.71 -56.31 By element: Atomic # 1 Polarization: 21.37 SS G_CDS: 0.32 Total: 21.69 kcal Atomic # 6 Polarization: -31.90 SS G_CDS: 3.21 Total: -28.69 kcal Atomic # 7 Polarization: -80.14 SS G_CDS: -2.27 Total: -82.40 kcal Atomic # 8 Polarization: -10.69 SS G_CDS: -1.58 Total: -12.26 kcal Atomic # 14 Polarization: 43.34 SS G_CDS: 2.03 Total: 45.36 kcal Total: -58.02 1.71 -56.31 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000226595517.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.607 kcal (2) G-P(sol) polarization free energy of solvation -58.018 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.625 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.711 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.307 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.915 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds