Wall clock time and date at job start Sun Mar 29 2020 21:53:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52997 * 109.47157 * 2 1 4 4 H 1.09004 * 109.47634 * 179.64197 * 3 2 1 5 5 C 1.50705 * 109.47348 * 299.63974 * 3 2 1 6 6 H 1.08002 * 119.99728 * 119.99613 * 5 3 2 7 7 C 1.37867 * 119.99977 * 299.99976 * 5 3 2 8 8 N 1.31516 * 120.00318 * 359.97438 * 7 5 3 9 9 Si 1.86799 * 120.00023 * 179.97438 * 7 5 3 10 10 H 1.48509 * 109.46981 * 90.00061 * 9 7 5 11 11 H 1.48502 * 109.47529 * 209.99826 * 9 7 5 12 12 H 1.48497 * 109.47306 * 330.00059 * 9 7 5 13 13 N 1.46901 * 109.47085 * 59.63976 * 3 2 1 14 14 C 1.46897 * 111.00069 * 85.97148 * 13 3 2 15 15 H 1.08998 * 109.61793 * 326.92204 * 14 13 3 16 16 C 1.53187 * 109.59747 * 87.11490 * 14 13 3 17 17 C 1.53088 * 109.21588 * 176.78603 * 16 14 13 18 18 O 1.42903 * 109.41216 * 302.42214 * 17 16 14 19 19 C 1.42895 * 114.09974 * 61.15757 * 18 17 16 20 20 H 1.08996 * 109.47948 * 58.82779 * 19 18 17 21 21 C 1.53004 * 109.49334 * 178.85205 * 19 18 17 22 22 C 1.53088 * 109.41832 * 298.84398 * 19 18 17 23 23 H 1.09002 * 109.46834 * 176.36576 * 1 2 3 24 24 H 1.08994 * 109.46929 * 296.36677 * 1 2 3 25 25 H 1.08996 * 109.47072 * 56.36616 * 1 2 3 26 26 H 1.09000 * 109.47160 * 240.00807 * 2 1 3 27 27 H 1.08996 * 109.47593 * 120.00272 * 2 1 3 28 28 H 0.96998 * 120.00723 * 180.02562 * 8 7 5 29 29 H 1.00906 * 111.00419 * 209.92740 * 13 3 2 30 30 H 1.08999 * 109.46984 * 56.87386 * 16 14 13 31 31 H 1.09007 * 109.57203 * 296.75479 * 16 14 13 32 32 H 1.09008 * 109.48300 * 182.44064 * 17 16 14 33 33 H 1.08996 * 109.48202 * 62.40619 * 17 16 14 34 34 H 1.08995 * 109.47424 * 179.97438 * 21 19 18 35 35 H 1.08993 * 109.47214 * 299.95367 * 21 19 18 36 36 H 1.09000 * 109.46955 * 59.94893 * 21 19 18 37 37 H 1.08995 * 109.52808 * 177.51190 * 22 19 18 38 38 H 1.09008 * 109.51993 * 297.63808 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1300 1.4426 0.0064 5 6 1.5450 2.1504 -1.2349 6 1 0.9234 3.0287 -1.1413 7 6 1.8854 1.6768 -2.4841 8 7 2.6426 0.6075 -2.5982 9 14 1.2713 2.5538 -4.0148 10 1 2.2515 3.5950 -4.4156 11 1 1.1131 1.5722 -5.1179 12 1 -0.0388 3.1914 -3.7280 13 7 1.5432 2.1375 1.1951 14 6 2.4325 1.9128 2.3425 15 1 2.8691 0.9162 2.2775 16 6 3.5493 2.9613 2.3400 17 6 4.4235 2.7693 3.5819 18 8 3.6119 2.8680 4.7539 19 6 2.5810 1.8818 4.8346 20 1 3.0270 0.8875 4.8162 21 6 1.7988 2.0661 6.1366 22 6 1.6328 2.0381 3.6429 23 1 -0.3633 -1.0256 -0.0651 24 1 -0.3633 0.4564 0.9207 25 1 -0.3633 0.5692 -0.8556 26 1 1.8933 -0.5137 -0.8901 27 1 1.8934 -0.5138 0.8899 28 1 2.8825 0.2745 -3.4770 29 1 1.4248 3.1236 1.0170 30 1 3.1109 3.9592 2.3538 31 1 4.1587 2.8436 1.4438 32 1 5.1938 3.5402 3.6071 33 1 4.8937 1.7865 3.5471 34 1 1.0123 1.3140 6.1976 35 1 2.4740 1.9548 6.9849 36 1 1.3532 3.0607 6.1551 37 1 0.8713 1.2591 3.6787 38 1 1.1548 3.0170 3.6837 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000226595522.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:53:08 Heat of formation + Delta-G solvation = -67.575048 kcal Electronic energy + Delta-G solvation = -16737.104140 eV Core-core repulsion = 14192.604659 eV Total energy + Delta-G solvation = -2544.499481 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.30926 -36.30414 -33.48823 -32.58472 -31.27833 -29.36303 -27.44064 -25.75512 -23.32877 -23.03458 -21.66440 -19.99657 -18.90760 -16.48724 -16.10506 -15.54458 -15.02110 -14.52223 -14.04136 -13.97163 -13.49401 -12.99264 -12.84405 -12.36083 -12.23789 -11.95428 -11.77939 -11.60927 -10.95279 -10.91724 -10.90671 -10.79406 -10.62214 -10.37181 -10.23774 -9.87675 -9.68354 -9.41861 -9.20034 -8.77599 -8.47570 -7.20553 -6.02936 -4.08423 3.28013 3.35348 3.38825 3.94648 4.39009 4.88498 5.12520 5.20032 5.23307 5.29923 5.37404 5.52851 5.67639 5.69380 5.77301 5.83862 6.01686 6.14246 6.17827 6.23320 6.39004 6.52885 6.57481 6.66071 6.67849 6.86343 7.23177 7.33041 7.43983 7.49650 7.73811 7.79138 7.84573 8.26639 8.40402 8.67637 9.01671 9.56611 11.02933 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.040297 B = 0.006728 C = 0.006292 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 694.682551 B = 4160.477764 C = 4449.287341 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.103 4.103 3 C 0.216 3.784 4 H 0.000 1.000 5 C -0.512 4.512 6 H 0.058 0.942 7 C 0.063 3.937 8 N -0.889 5.889 9 Si 0.892 3.108 10 H -0.282 1.282 11 H -0.287 1.287 12 H -0.274 1.274 13 N -0.679 5.679 14 C 0.088 3.912 15 H 0.068 0.932 16 C -0.182 4.182 17 C 0.067 3.933 18 O -0.386 6.386 19 C 0.085 3.915 20 H 0.053 0.947 21 C -0.142 4.142 22 C -0.133 4.133 23 H 0.013 0.987 24 H 0.042 0.958 25 H 0.055 0.945 26 H 0.086 0.914 27 H 0.008 0.992 28 H 0.260 0.740 29 H 0.331 0.669 30 H 0.067 0.933 31 H 0.074 0.926 32 H 0.087 0.913 33 H 0.046 0.954 34 H 0.069 0.931 35 H 0.057 0.943 36 H 0.061 0.939 37 H 0.074 0.926 38 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.608 1.723 11.596 11.739 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.142 4.142 3 C 0.109 3.891 4 H 0.018 0.982 5 C -0.551 4.551 6 H 0.076 0.924 7 C -0.138 4.138 8 N -0.528 5.528 9 Si 0.720 3.280 10 H -0.208 1.208 11 H -0.212 1.212 12 H -0.199 1.199 13 N -0.308 5.308 14 C -0.023 4.023 15 H 0.087 0.913 16 C -0.222 4.222 17 C -0.010 4.010 18 O -0.306 6.306 19 C 0.026 3.974 20 H 0.071 0.929 21 C -0.199 4.199 22 C -0.172 4.172 23 H 0.032 0.968 24 H 0.061 0.939 25 H 0.074 0.926 26 H 0.104 0.896 27 H 0.027 0.973 28 H 0.070 0.930 29 H 0.149 0.851 30 H 0.086 0.914 31 H 0.093 0.907 32 H 0.105 0.895 33 H 0.064 0.936 34 H 0.088 0.912 35 H 0.077 0.923 36 H 0.080 0.920 37 H 0.092 0.908 38 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 0.260 1.222 11.739 11.805 hybrid contribution 0.505 0.759 -1.481 1.739 sum 0.766 1.981 10.258 10.475 Atomic orbital electron populations 1.21443 0.97533 0.97332 1.01360 1.21445 0.95036 0.98353 0.99319 1.19128 0.92889 0.91382 0.85732 0.98215 1.21195 1.31573 1.11912 0.90400 0.92375 1.24880 0.95063 0.94979 0.98912 1.69881 1.36655 1.22700 1.23573 0.86589 0.79243 0.79335 0.82797 1.20837 1.21241 1.19869 1.60757 1.48156 1.15926 1.05997 1.21538 0.91135 0.97537 0.92069 0.91331 1.22946 0.99653 1.01083 0.98513 1.22490 0.92699 1.00987 0.84841 1.87852 1.45683 1.54868 1.42163 1.22122 0.88404 0.91314 0.95512 0.92875 1.21741 0.99593 1.02622 0.95942 1.22210 0.98380 1.02908 0.93680 0.96833 0.93938 0.92557 0.89562 0.97335 0.92975 0.85137 0.91404 0.90731 0.89474 0.93554 0.91197 0.92345 0.91971 0.90780 0.91510 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.68 9.52 37.16 0.35 -2.33 16 2 C -0.10 -2.49 5.57 -26.73 -0.15 -2.64 16 3 C 0.22 5.28 2.11 -68.86 -0.15 5.14 16 4 H 0.00 0.01 7.31 -51.93 -0.38 -0.37 16 5 C -0.51 -13.59 7.28 -34.44 -0.25 -13.84 16 6 H 0.06 1.54 7.60 -52.49 -0.40 1.14 16 7 C 0.06 1.72 5.30 -17.82 -0.09 1.62 16 8 N -0.89 -24.99 11.32 55.43 0.63 -24.36 16 9 Si 0.89 21.05 29.54 -169.99 -5.02 16.03 16 10 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 11 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 12 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 13 N -0.68 -14.02 5.36 -100.75 -0.54 -14.56 16 14 C 0.09 1.57 2.35 -67.53 -0.16 1.41 16 15 H 0.07 1.31 7.20 -51.93 -0.37 0.94 16 16 C -0.18 -2.97 5.39 -26.59 -0.14 -3.11 16 17 C 0.07 0.96 6.84 37.20 0.25 1.21 16 18 O -0.39 -5.82 10.41 -35.23 -0.37 -6.18 16 19 C 0.08 1.16 3.27 -26.68 -0.09 1.07 16 20 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 21 C -0.14 -1.58 9.57 37.16 0.36 -1.23 16 22 C -0.13 -2.03 5.03 -26.59 -0.13 -2.17 16 23 H 0.01 0.26 8.14 -51.93 -0.42 -0.16 16 24 H 0.04 0.91 7.71 -51.93 -0.40 0.51 16 25 H 0.06 1.36 7.10 -51.93 -0.37 0.99 16 26 H 0.09 2.32 6.06 -51.93 -0.31 2.01 16 27 H 0.01 0.18 7.53 -51.93 -0.39 -0.21 16 28 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 29 H 0.33 6.83 7.88 -39.29 -0.31 6.52 16 30 H 0.07 1.10 8.08 -51.93 -0.42 0.68 16 31 H 0.07 1.32 7.65 -51.92 -0.40 0.92 16 32 H 0.09 1.09 8.14 -51.92 -0.42 0.67 16 33 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 37 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 38 H 0.07 1.03 8.14 -51.92 -0.42 0.61 16 LS Contribution 295.90 15.07 4.46 4.46 Total: -1.00 -27.51 295.90 -7.73 -35.24 By element: Atomic # 1 Polarization: 10.94 SS G_CDS: -6.69 Total: 4.25 kcal Atomic # 6 Polarization: -14.67 SS G_CDS: -0.20 Total: -14.87 kcal Atomic # 7 Polarization: -39.00 SS G_CDS: 0.09 Total: -38.92 kcal Atomic # 8 Polarization: -5.82 SS G_CDS: -0.37 Total: -6.18 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.03 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -27.51 -7.73 -35.24 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000226595522.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.336 kcal (2) G-P(sol) polarization free energy of solvation -27.505 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.842 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.734 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.239 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.575 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds