Wall clock time and date at job start Sun Mar 29 2020 21:53:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52997 * 109.47157 * 2 1 4 4 H 1.09004 * 109.47634 * 179.64197 * 3 2 1 5 5 C 1.50705 * 109.47348 * 299.63974 * 3 2 1 6 6 H 1.08002 * 119.99728 * 119.99613 * 5 3 2 7 7 C 1.37867 * 119.99977 * 299.99976 * 5 3 2 8 8 N 1.31516 * 120.00318 * 359.97438 * 7 5 3 9 9 Si 1.86799 * 120.00023 * 179.97438 * 7 5 3 10 10 H 1.48509 * 109.46981 * 90.00061 * 9 7 5 11 11 H 1.48502 * 109.47529 * 209.99826 * 9 7 5 12 12 H 1.48497 * 109.47306 * 330.00059 * 9 7 5 13 13 N 1.46901 * 109.47085 * 59.63976 * 3 2 1 14 14 C 1.46897 * 111.00069 * 85.97148 * 13 3 2 15 15 H 1.08998 * 109.61793 * 326.92204 * 14 13 3 16 16 C 1.53187 * 109.59747 * 87.11490 * 14 13 3 17 17 C 1.53088 * 109.21588 * 176.78603 * 16 14 13 18 18 O 1.42903 * 109.41216 * 302.42214 * 17 16 14 19 19 C 1.42895 * 114.09974 * 61.15757 * 18 17 16 20 20 H 1.08996 * 109.47948 * 58.82779 * 19 18 17 21 21 C 1.53004 * 109.49334 * 178.85205 * 19 18 17 22 22 C 1.53088 * 109.41832 * 298.84398 * 19 18 17 23 23 H 1.09002 * 109.46834 * 176.36576 * 1 2 3 24 24 H 1.08994 * 109.46929 * 296.36677 * 1 2 3 25 25 H 1.08996 * 109.47072 * 56.36616 * 1 2 3 26 26 H 1.09000 * 109.47160 * 240.00807 * 2 1 3 27 27 H 1.08996 * 109.47593 * 120.00272 * 2 1 3 28 28 H 0.96998 * 120.00723 * 180.02562 * 8 7 5 29 29 H 1.00906 * 111.00419 * 209.92740 * 13 3 2 30 30 H 1.08999 * 109.46984 * 56.87386 * 16 14 13 31 31 H 1.09007 * 109.57203 * 296.75479 * 16 14 13 32 32 H 1.09008 * 109.48300 * 182.44064 * 17 16 14 33 33 H 1.08996 * 109.48202 * 62.40619 * 17 16 14 34 34 H 1.08995 * 109.47424 * 179.97438 * 21 19 18 35 35 H 1.08993 * 109.47214 * 299.95367 * 21 19 18 36 36 H 1.09000 * 109.46955 * 59.94893 * 21 19 18 37 37 H 1.08995 * 109.52808 * 177.51190 * 22 19 18 38 38 H 1.09008 * 109.51993 * 297.63808 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1300 1.4426 0.0064 5 6 1.5450 2.1504 -1.2349 6 1 0.9234 3.0287 -1.1413 7 6 1.8854 1.6768 -2.4841 8 7 2.6426 0.6075 -2.5982 9 14 1.2713 2.5538 -4.0148 10 1 2.2515 3.5950 -4.4156 11 1 1.1131 1.5722 -5.1179 12 1 -0.0388 3.1914 -3.7280 13 7 1.5432 2.1375 1.1951 14 6 2.4325 1.9128 2.3425 15 1 2.8691 0.9162 2.2775 16 6 3.5493 2.9613 2.3400 17 6 4.4235 2.7693 3.5819 18 8 3.6119 2.8680 4.7539 19 6 2.5810 1.8818 4.8346 20 1 3.0270 0.8875 4.8162 21 6 1.7988 2.0661 6.1366 22 6 1.6328 2.0381 3.6429 23 1 -0.3633 -1.0256 -0.0651 24 1 -0.3633 0.4564 0.9207 25 1 -0.3633 0.5692 -0.8556 26 1 1.8933 -0.5137 -0.8901 27 1 1.8934 -0.5138 0.8899 28 1 2.8825 0.2745 -3.4770 29 1 1.4248 3.1236 1.0170 30 1 3.1109 3.9592 2.3538 31 1 4.1587 2.8436 1.4438 32 1 5.1938 3.5402 3.6071 33 1 4.8937 1.7865 3.5471 34 1 1.0123 1.3140 6.1976 35 1 2.4740 1.9548 6.9849 36 1 1.3532 3.0607 6.1551 37 1 0.8713 1.2591 3.6787 38 1 1.1548 3.0170 3.6837 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000226595522.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:53:07 Heat of formation + Delta-G solvation = -84.473511 kcal Electronic energy + Delta-G solvation = -16737.836912 eV Core-core repulsion = 14192.604659 eV Total energy + Delta-G solvation = -2545.232253 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.56856 -37.99553 -35.19587 -33.68562 -33.18598 -30.99485 -28.74175 -27.53600 -25.17089 -24.39858 -22.93695 -21.35373 -20.75201 -18.39613 -17.24004 -16.94794 -16.82937 -15.93090 -15.56926 -15.46116 -15.11798 -14.60857 -14.40486 -13.83561 -13.63846 -13.42224 -13.08912 -12.83540 -12.80145 -12.68485 -12.48739 -12.16953 -12.06721 -12.04806 -11.90387 -11.55565 -11.32880 -11.12205 -10.81342 -10.54999 -10.43067 -8.94073 -8.10097 -6.22156 1.40587 1.42759 1.52184 2.41984 2.85391 3.18621 3.51816 3.83867 3.98973 4.03188 4.23014 4.27875 4.45656 4.50888 4.60989 4.65860 4.77838 4.78846 4.85467 4.90476 4.96616 5.03811 5.09152 5.24134 5.27741 5.32950 5.37350 5.44090 5.57854 5.71411 5.82757 5.90343 6.28153 6.30735 6.51651 6.81326 7.04262 7.46890 8.94920 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.040297 B = 0.006728 C = 0.006292 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 694.682551 B = 4160.477764 C = 4449.287341 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.100 4.100 3 C 0.225 3.775 4 H -0.035 1.035 5 C -0.523 4.523 6 H 0.056 0.944 7 C 0.017 3.983 8 N -0.917 5.917 9 Si 0.953 3.047 10 H -0.278 1.278 11 H -0.285 1.285 12 H -0.268 1.268 13 N -0.675 5.675 14 C 0.086 3.914 15 H 0.052 0.948 16 C -0.176 4.176 17 C 0.071 3.929 18 O -0.393 6.393 19 C 0.082 3.918 20 H 0.057 0.943 21 C -0.137 4.137 22 C -0.123 4.123 23 H 0.032 0.968 24 H 0.053 0.947 25 H 0.035 0.965 26 H 0.057 0.943 27 H 0.017 0.983 28 H 0.260 0.740 29 H 0.331 0.669 30 H 0.068 0.932 31 H 0.053 0.947 32 H 0.107 0.893 33 H 0.051 0.949 34 H 0.085 0.915 35 H 0.068 0.932 36 H 0.061 0.939 37 H 0.076 0.924 38 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.049 2.214 12.738 12.929 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.138 4.138 3 C 0.116 3.884 4 H -0.017 1.017 5 C -0.561 4.561 6 H 0.074 0.926 7 C -0.182 4.182 8 N -0.556 5.556 9 Si 0.779 3.221 10 H -0.204 1.204 11 H -0.211 1.211 12 H -0.193 1.193 13 N -0.304 5.304 14 C -0.025 4.025 15 H 0.070 0.930 16 C -0.216 4.216 17 C -0.006 4.006 18 O -0.313 6.313 19 C 0.024 3.976 20 H 0.075 0.925 21 C -0.194 4.194 22 C -0.162 4.162 23 H 0.051 0.949 24 H 0.072 0.928 25 H 0.054 0.946 26 H 0.075 0.925 27 H 0.036 0.964 28 H 0.070 0.930 29 H 0.148 0.852 30 H 0.087 0.913 31 H 0.072 0.928 32 H 0.125 0.875 33 H 0.069 0.931 34 H 0.104 0.896 35 H 0.087 0.913 36 H 0.080 0.920 37 H 0.094 0.906 38 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -0.400 1.721 12.903 13.023 hybrid contribution 0.736 0.593 -1.803 2.036 sum 0.336 2.314 11.100 11.344 Atomic orbital electron populations 1.21302 0.95919 0.98316 1.00894 1.21332 0.96357 0.97863 0.98289 1.18883 0.90727 0.91959 0.86813 1.01718 1.21459 1.31335 1.11910 0.91441 0.92607 1.25607 0.95253 0.95618 1.01699 1.70014 1.37647 1.23900 1.24083 0.85632 0.78853 0.78261 0.79342 1.20401 1.21096 1.19302 1.60708 1.48755 1.15567 1.05323 1.21609 0.91644 0.97106 0.92134 0.92972 1.22835 0.99281 1.00493 0.98949 1.22510 0.92529 1.02068 0.83540 1.87861 1.45972 1.55389 1.42051 1.22259 0.88021 0.91312 0.95992 0.92518 1.21740 0.99858 1.03181 0.94648 1.22122 0.98378 1.02920 0.92757 0.94908 0.92843 0.94606 0.92467 0.96426 0.93048 0.85186 0.91313 0.92792 0.87456 0.93086 0.89599 0.91313 0.92002 0.90567 0.91555 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.71 9.52 71.98 0.69 -4.03 16 2 C -0.10 -4.86 5.57 30.59 0.17 -4.69 16 3 C 0.22 11.17 2.11 44.17 0.09 11.27 16 4 H -0.03 -1.94 7.31 -2.38 -0.02 -1.96 16 5 C -0.52 -28.03 7.28 25.60 0.19 -27.85 16 6 H 0.06 2.96 7.60 -2.91 -0.02 2.94 16 7 C 0.02 0.95 5.30 84.65 0.45 1.39 16 8 N -0.92 -52.42 11.32 21.44 0.24 -52.18 16 9 Si 0.95 43.27 29.54 68.60 2.03 45.30 16 10 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 11 H -0.29 -12.81 7.11 99.48 0.71 -12.11 16 12 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 13 N -0.67 -27.84 5.36 -472.68 -2.53 -30.37 16 14 C 0.09 3.01 2.35 45.04 0.11 3.11 16 15 H 0.05 2.00 7.20 -2.39 -0.02 1.98 16 16 C -0.18 -5.69 5.39 30.69 0.17 -5.53 16 17 C 0.07 1.91 6.84 72.01 0.49 2.41 16 18 O -0.39 -11.00 10.41 -148.98 -1.55 -12.55 16 19 C 0.08 2.07 3.27 30.63 0.10 2.17 16 20 H 0.06 1.40 8.14 -2.39 -0.02 1.39 16 21 C -0.14 -2.67 9.57 71.98 0.69 -1.98 16 22 C -0.12 -3.56 5.03 30.68 0.15 -3.41 16 23 H 0.03 1.28 8.14 -2.39 -0.02 1.26 16 24 H 0.05 2.20 7.71 -2.39 -0.02 2.19 16 25 H 0.03 1.70 7.10 -2.39 -0.02 1.68 16 26 H 0.06 3.14 6.06 -2.39 -0.01 3.12 16 27 H 0.02 0.79 7.53 -2.39 -0.02 0.77 16 28 H 0.26 14.23 8.31 -92.71 -0.77 13.46 16 29 H 0.33 13.63 7.88 -89.69 -0.71 12.92 16 30 H 0.07 2.19 8.08 -2.39 -0.02 2.17 16 31 H 0.05 1.95 7.65 -2.38 -0.02 1.93 16 32 H 0.11 2.47 8.14 -2.38 -0.02 2.45 16 33 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 34 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16 35 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 36 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 37 H 0.08 2.17 8.14 -2.39 -0.02 2.16 16 38 H 0.07 1.93 8.14 -2.38 -0.02 1.91 16 Total: -1.00 -58.20 295.90 1.78 -56.42 By element: Atomic # 1 Polarization: 20.22 SS G_CDS: 0.31 Total: 20.53 kcal Atomic # 6 Polarization: -30.43 SS G_CDS: 3.29 Total: -27.14 kcal Atomic # 7 Polarization: -80.26 SS G_CDS: -2.29 Total: -82.55 kcal Atomic # 8 Polarization: -11.00 SS G_CDS: -1.55 Total: -12.55 kcal Atomic # 14 Polarization: 43.27 SS G_CDS: 2.03 Total: 45.30 kcal Total: -58.20 1.78 -56.42 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000226595522.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.054 kcal (2) G-P(sol) polarization free energy of solvation -58.204 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.258 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.784 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.419 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.474 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds