Wall clock time and date at job start Sun Mar 29 2020 22:16:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09004 * 110.35188 * 2 1 4 4 C 1.54589 * 110.31196 * 237.86049 * 2 1 3 5 5 C 1.54935 * 102.92302 * 219.12541 * 4 2 1 6 6 N 1.48535 * 103.22910 * 37.41158 * 5 4 2 7 7 C 1.46899 * 111.00302 * 200.28233 * 6 5 4 8 8 C 1.52996 * 109.46973 * 287.39655 * 7 6 5 9 9 C 1.53000 * 109.47328 * 180.02562 * 8 7 6 10 10 C 1.50696 * 109.47457 * 179.97438 * 9 8 7 11 11 H 1.08003 * 120.00087 * 0.02562 * 10 9 8 12 12 C 1.37875 * 119.99956 * 179.97438 * 10 9 8 13 13 N 1.31510 * 120.00308 * 0.02562 * 12 10 9 14 14 Si 1.86800 * 119.99908 * 180.02562 * 12 10 9 15 15 H 1.48503 * 109.46845 * 60.00735 * 14 12 10 16 16 H 1.48503 * 109.47399 * 180.02562 * 14 12 10 17 17 H 1.48498 * 109.47295 * 300.00832 * 14 12 10 18 18 C 1.47909 * 105.81801 * 320.79354 * 6 5 4 19 19 H 1.08991 * 109.91716 * 265.97601 * 18 6 5 20 20 C 1.53002 * 109.91528 * 144.67958 * 18 6 5 21 21 O 1.42903 * 109.46980 * 66.45513 * 20 18 6 22 22 H 1.08999 * 109.46933 * 297.85252 * 1 2 3 23 23 H 1.08997 * 109.47466 * 57.85845 * 1 2 3 24 24 H 1.08999 * 109.46574 * 177.85698 * 1 2 3 25 25 H 1.09004 * 110.72009 * 337.48115 * 4 2 1 26 26 H 1.08996 * 110.72894 * 100.58649 * 4 2 1 27 27 H 1.08999 * 110.66832 * 278.97646 * 5 4 2 28 28 H 1.09002 * 110.66991 * 155.84686 * 5 4 2 29 29 H 1.09001 * 109.47354 * 167.39298 * 7 6 5 30 30 H 1.09000 * 109.47162 * 47.39280 * 7 6 5 31 31 H 1.09001 * 109.47372 * 59.99654 * 8 7 6 32 32 H 1.09000 * 109.46870 * 299.99804 * 8 7 6 33 33 H 1.09001 * 109.47194 * 59.99524 * 9 8 7 34 34 H 1.09004 * 109.46724 * 300.00183 * 9 8 7 35 35 H 0.97000 * 119.99806 * 0.02562 * 13 12 10 36 36 H 1.09001 * 109.46820 * 186.45568 * 20 18 6 37 37 H 1.09003 * 109.47195 * 306.45663 * 20 18 6 38 38 H 0.96693 * 113.99779 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9091 1.0220 0.0000 4 6 2.0667 -0.7712 -1.2276 5 6 3.2856 -1.5347 -0.6515 6 7 2.8314 -1.9235 0.7082 7 6 3.9753 -2.2261 1.5789 8 6 4.5933 -3.5624 1.1630 9 6 5.7842 -3.8780 2.0702 10 6 6.3926 -5.1945 1.6609 11 1 5.9722 -5.7505 0.8359 12 6 7.4866 -5.6888 2.3390 13 7 7.9989 -5.0116 3.3432 14 14 8.2412 -7.3204 1.8312 15 1 8.7010 -7.2358 0.4217 16 1 9.3971 -7.6267 2.7118 17 1 7.2251 -8.3961 1.9567 18 6 2.0646 -0.7682 1.2229 19 1 2.7162 -0.1225 1.8114 20 6 0.8970 -1.2586 2.0815 21 8 1.4038 -1.8875 3.2604 22 1 -0.3633 0.4801 0.9086 23 1 -0.3634 0.5467 -0.8701 24 1 -0.3632 -1.0270 -0.0384 25 1 1.3173 -1.4682 -1.6030 26 1 2.3762 -0.0806 -2.0120 27 1 4.1564 -0.8817 -0.5941 28 1 3.5048 -2.4181 -1.2512 29 1 3.6380 -2.2881 2.6136 30 1 4.7210 -1.4365 1.4866 31 1 4.9306 -3.5004 0.1283 32 1 3.8475 -4.3520 1.2553 33 1 5.4465 -3.9401 3.1047 34 1 6.5301 -3.0884 1.9783 35 1 7.6069 -4.1646 3.6071 36 1 0.2714 -0.4112 2.3621 37 1 0.3042 -1.9756 1.5135 38 1 0.7175 -2.2230 3.8532 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000227008129.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:16:03 Heat of formation + Delta-G solvation = -68.847207 kcal Electronic energy + Delta-G solvation = -16271.951788 eV Core-core repulsion = 13727.397143 eV Total energy + Delta-G solvation = -2544.554646 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.61057 -36.23181 -34.87487 -33.13545 -30.92259 -30.18661 -27.10685 -24.93856 -24.55996 -22.60554 -21.21850 -20.00141 -19.05749 -17.43690 -16.67078 -15.88737 -15.31180 -14.93242 -14.26855 -13.65875 -13.59879 -13.51192 -13.13241 -13.00016 -12.58375 -12.26597 -11.82798 -11.62942 -11.35043 -11.02882 -10.91784 -10.81218 -10.62152 -10.58381 -10.26332 -10.05091 -9.83580 -9.58957 -9.55966 -8.42681 -8.22685 -8.12248 -6.26368 -3.93972 3.49407 3.52219 3.70694 4.15050 4.20087 4.53098 4.63179 4.75652 4.84094 5.25570 5.26439 5.28617 5.36873 5.49168 5.51010 5.55282 5.62413 5.72657 5.83714 5.87532 5.96579 5.98444 6.08170 6.16461 6.24775 6.43281 6.70645 6.82468 7.09176 7.27016 7.43963 7.57849 7.70945 7.76680 8.35206 8.57666 8.99636 9.78226 11.14371 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.043603 B = 0.005255 C = 0.004925 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 642.001542 B = 5326.801660 C = 5684.031719 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.097 4.097 3 H 0.075 0.925 4 C -0.119 4.119 5 C 0.033 3.967 6 N -0.506 5.506 7 C 0.049 3.951 8 C -0.092 4.092 9 C 0.009 3.991 10 C -0.597 4.597 11 H 0.047 0.953 12 C 0.012 3.988 13 N -0.916 5.916 14 Si 1.069 2.931 15 H -0.289 1.289 16 H -0.283 1.283 17 H -0.288 1.288 18 C 0.066 3.934 19 H 0.054 0.946 20 C 0.092 3.908 21 O -0.566 6.566 22 H 0.057 0.943 23 H 0.054 0.946 24 H 0.062 0.938 25 H 0.074 0.926 26 H 0.068 0.932 27 H 0.042 0.958 28 H 0.084 0.916 29 H 0.082 0.918 30 H 0.023 0.977 31 H 0.043 0.957 32 H 0.055 0.945 33 H 0.007 0.993 34 H 0.002 0.998 35 H 0.268 0.732 36 H 0.044 0.956 37 H 0.053 0.947 38 H 0.373 0.627 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.041 10.771 -6.222 20.299 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.116 4.116 3 H 0.093 0.907 4 C -0.157 4.157 5 C -0.095 4.095 6 N -0.230 5.230 7 C -0.078 4.078 8 C -0.130 4.130 9 C -0.029 4.029 10 C -0.636 4.636 11 H 0.066 0.934 12 C -0.191 4.191 13 N -0.553 5.553 14 Si 0.898 3.102 15 H -0.215 1.215 16 H -0.208 1.208 17 H -0.215 1.215 18 C -0.043 4.043 19 H 0.072 0.928 20 C 0.014 3.986 21 O -0.371 6.371 22 H 0.076 0.924 23 H 0.073 0.927 24 H 0.081 0.919 25 H 0.093 0.907 26 H 0.087 0.913 27 H 0.061 0.939 28 H 0.102 0.898 29 H 0.100 0.900 30 H 0.042 0.958 31 H 0.062 0.938 32 H 0.074 0.926 33 H 0.025 0.975 34 H 0.021 0.979 35 H 0.078 0.922 36 H 0.062 0.938 37 H 0.071 0.929 38 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges -14.564 9.388 -6.146 18.386 hybrid contribution -1.213 1.735 -0.080 2.119 sum -15.778 11.123 -6.226 20.284 Atomic orbital electron populations 1.21949 0.94629 1.02309 1.01556 1.21957 0.96297 0.98865 0.94470 0.90660 1.22590 0.97950 0.98599 0.96526 1.23242 0.95852 0.99081 0.91349 1.64701 1.22313 1.33999 1.01952 1.22491 0.89812 0.98000 0.97501 1.21418 0.98039 0.94143 0.99428 1.19198 0.92383 0.96655 0.94635 1.22068 1.16419 1.06234 1.18867 0.93429 1.25851 0.94932 1.03978 0.94331 1.70770 1.42135 1.15744 1.26622 0.83549 0.76205 0.74833 0.75651 1.21537 1.20828 1.21475 1.22372 0.95335 0.91872 0.94683 0.92760 1.22361 0.94965 0.95415 0.85900 1.86560 1.37390 1.79059 1.34100 0.92417 0.92663 0.91852 0.90690 0.91293 0.93949 0.89810 0.89976 0.95848 0.93776 0.92638 0.97477 0.97924 0.92168 0.93827 0.92886 0.78031 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.25 7.92 37.16 0.29 -0.96 16 2 C -0.10 -1.03 3.59 -89.26 -0.32 -1.35 16 3 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 4 C -0.12 -1.31 6.61 -24.87 -0.16 -1.48 16 5 C 0.03 0.47 5.91 -1.90 -0.01 0.46 16 6 N -0.51 -8.34 4.86 -222.57 -1.08 -9.42 16 7 C 0.05 0.97 4.63 -3.83 -0.02 0.96 16 8 C -0.09 -2.12 5.24 -26.73 -0.14 -2.26 16 9 C 0.01 0.24 4.28 -27.88 -0.12 0.12 16 10 C -0.60 -18.04 9.11 -34.44 -0.31 -18.36 16 11 H 0.05 1.41 7.74 -52.48 -0.41 1.01 16 12 C 0.01 0.37 5.46 -17.82 -0.10 0.27 16 13 N -0.92 -29.31 13.65 55.43 0.76 -28.55 16 14 Si 1.07 26.32 29.90 -169.99 -5.08 21.24 16 15 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 16 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 17 H -0.29 -6.77 7.11 56.52 0.40 -6.36 16 18 C 0.07 0.91 2.78 -66.64 -0.19 0.73 16 19 H 0.05 0.81 7.77 -51.93 -0.40 0.41 16 20 C 0.09 1.12 5.51 37.16 0.20 1.32 16 21 O -0.57 -7.98 12.17 -35.23 -0.43 -8.41 16 22 H 0.06 0.44 6.62 -51.93 -0.34 0.10 16 23 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 24 H 0.06 0.56 6.87 -51.93 -0.36 0.21 16 25 H 0.07 0.81 7.84 -51.93 -0.41 0.40 16 26 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 27 H 0.04 0.63 7.81 -51.93 -0.41 0.22 16 28 H 0.08 1.26 7.80 -51.93 -0.41 0.85 16 29 H 0.08 1.72 6.66 -51.93 -0.35 1.37 16 30 H 0.02 0.46 7.83 -51.93 -0.41 0.06 16 31 H 0.04 1.00 7.37 -51.93 -0.38 0.61 16 32 H 0.05 1.31 8.14 -51.93 -0.42 0.89 16 33 H 0.01 0.20 8.01 -51.93 -0.42 -0.21 16 34 H 0.00 0.07 8.01 -51.93 -0.42 -0.34 16 35 H 0.27 8.58 7.22 -40.82 -0.29 8.28 16 36 H 0.04 0.43 6.54 -51.93 -0.34 0.09 16 37 H 0.05 0.64 6.97 -51.93 -0.36 0.28 16 38 H 0.37 3.47 9.12 45.56 0.42 3.89 16 LS Contribution 295.70 15.07 4.46 4.46 Total: -1.00 -33.82 295.70 -8.01 -41.83 By element: Atomic # 1 Polarization: 5.15 SS G_CDS: -5.76 Total: -0.61 kcal Atomic # 6 Polarization: -19.66 SS G_CDS: -0.87 Total: -20.53 kcal Atomic # 7 Polarization: -37.65 SS G_CDS: -0.33 Total: -37.97 kcal Atomic # 8 Polarization: -7.98 SS G_CDS: -0.43 Total: -8.41 kcal Atomic # 14 Polarization: 26.32 SS G_CDS: -5.08 Total: 21.24 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -33.82 -8.01 -41.83 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000227008129.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.014 kcal (2) G-P(sol) polarization free energy of solvation -33.819 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.833 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.014 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.833 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.847 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds