Wall clock time and date at job start Sun Mar 29 2020 22:16:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09004 * 110.35188 * 2 1 4 4 C 1.54589 * 110.31196 * 237.86049 * 2 1 3 5 5 C 1.54935 * 102.92302 * 219.12541 * 4 2 1 6 6 N 1.48535 * 103.22910 * 37.41158 * 5 4 2 7 7 C 1.46899 * 111.00302 * 200.28233 * 6 5 4 8 8 C 1.52996 * 109.46973 * 287.39655 * 7 6 5 9 9 C 1.53000 * 109.47328 * 180.02562 * 8 7 6 10 10 C 1.50696 * 109.47457 * 179.97438 * 9 8 7 11 11 H 1.08003 * 120.00087 * 0.02562 * 10 9 8 12 12 C 1.37875 * 119.99956 * 179.97438 * 10 9 8 13 13 N 1.31510 * 120.00308 * 0.02562 * 12 10 9 14 14 Si 1.86800 * 119.99908 * 180.02562 * 12 10 9 15 15 H 1.48503 * 109.46845 * 60.00735 * 14 12 10 16 16 H 1.48503 * 109.47399 * 180.02562 * 14 12 10 17 17 H 1.48498 * 109.47295 * 300.00832 * 14 12 10 18 18 C 1.47909 * 105.81801 * 320.79354 * 6 5 4 19 19 H 1.08991 * 109.91716 * 265.97601 * 18 6 5 20 20 C 1.53002 * 109.91528 * 144.67958 * 18 6 5 21 21 O 1.42903 * 109.46980 * 66.45513 * 20 18 6 22 22 H 1.08999 * 109.46933 * 297.85252 * 1 2 3 23 23 H 1.08997 * 109.47466 * 57.85845 * 1 2 3 24 24 H 1.08999 * 109.46574 * 177.85698 * 1 2 3 25 25 H 1.09004 * 110.72009 * 337.48115 * 4 2 1 26 26 H 1.08996 * 110.72894 * 100.58649 * 4 2 1 27 27 H 1.08999 * 110.66832 * 278.97646 * 5 4 2 28 28 H 1.09002 * 110.66991 * 155.84686 * 5 4 2 29 29 H 1.09001 * 109.47354 * 167.39298 * 7 6 5 30 30 H 1.09000 * 109.47162 * 47.39280 * 7 6 5 31 31 H 1.09001 * 109.47372 * 59.99654 * 8 7 6 32 32 H 1.09000 * 109.46870 * 299.99804 * 8 7 6 33 33 H 1.09001 * 109.47194 * 59.99524 * 9 8 7 34 34 H 1.09004 * 109.46724 * 300.00183 * 9 8 7 35 35 H 0.97000 * 119.99806 * 0.02562 * 13 12 10 36 36 H 1.09001 * 109.46820 * 186.45568 * 20 18 6 37 37 H 1.09003 * 109.47195 * 306.45663 * 20 18 6 38 38 H 0.96693 * 113.99779 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9091 1.0220 0.0000 4 6 2.0667 -0.7712 -1.2276 5 6 3.2856 -1.5347 -0.6515 6 7 2.8314 -1.9235 0.7082 7 6 3.9753 -2.2261 1.5789 8 6 4.5933 -3.5624 1.1630 9 6 5.7842 -3.8780 2.0702 10 6 6.3926 -5.1945 1.6609 11 1 5.9722 -5.7505 0.8359 12 6 7.4866 -5.6888 2.3390 13 7 7.9989 -5.0116 3.3432 14 14 8.2412 -7.3204 1.8312 15 1 8.7010 -7.2358 0.4217 16 1 9.3971 -7.6267 2.7118 17 1 7.2251 -8.3961 1.9567 18 6 2.0646 -0.7682 1.2229 19 1 2.7162 -0.1225 1.8114 20 6 0.8970 -1.2586 2.0815 21 8 1.4038 -1.8875 3.2604 22 1 -0.3633 0.4801 0.9086 23 1 -0.3634 0.5467 -0.8701 24 1 -0.3632 -1.0270 -0.0384 25 1 1.3173 -1.4682 -1.6030 26 1 2.3762 -0.0806 -2.0120 27 1 4.1564 -0.8817 -0.5941 28 1 3.5048 -2.4181 -1.2512 29 1 3.6380 -2.2881 2.6136 30 1 4.7210 -1.4365 1.4866 31 1 4.9306 -3.5004 0.1283 32 1 3.8475 -4.3520 1.2553 33 1 5.4465 -3.9401 3.1047 34 1 6.5301 -3.0884 1.9783 35 1 7.6069 -4.1646 3.6071 36 1 0.2714 -0.4112 2.3621 37 1 0.3042 -1.9756 1.5135 38 1 0.7175 -2.2230 3.8532 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000227008129.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:16:03 Heat of formation + Delta-G solvation = -93.836918 kcal Electronic energy + Delta-G solvation = -16273.035423 eV Core-core repulsion = 13727.397143 eV Total energy + Delta-G solvation = -2545.638281 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.70822 -37.33603 -36.63634 -34.91381 -32.54403 -31.36602 -28.56814 -26.57863 -25.51570 -24.47896 -22.68433 -21.61100 -20.05926 -18.95652 -18.40670 -17.02555 -16.52032 -16.25098 -15.69921 -15.62646 -15.15119 -14.64405 -14.57169 -14.10746 -13.92973 -13.51997 -13.46932 -12.97273 -12.80945 -12.57415 -12.40446 -12.01584 -11.97689 -11.84513 -11.72949 -11.59453 -11.51181 -11.34619 -10.77070 -10.65072 -10.56244 -9.44595 -8.71966 -6.41991 1.51210 1.60909 1.80598 2.56089 2.93000 3.13695 3.28870 3.60463 3.82615 3.91586 4.09286 4.23935 4.28420 4.35792 4.41139 4.53618 4.57984 4.61668 4.67918 4.71064 4.80096 4.89584 4.92123 4.96493 5.05818 5.13846 5.17809 5.25929 5.38824 5.43287 5.49383 5.94626 5.99699 6.07367 6.15532 6.54611 6.97327 7.40966 8.68602 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.043603 B = 0.005255 C = 0.004925 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 642.001542 B = 5326.801660 C = 5684.031719 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.091 4.091 3 H 0.086 0.914 4 C -0.109 4.109 5 C 0.024 3.976 6 N -0.514 5.514 7 C 0.066 3.934 8 C -0.075 4.075 9 C 0.011 3.989 10 C -0.620 4.620 11 H 0.050 0.950 12 C -0.041 4.041 13 N -0.937 5.937 14 Si 1.122 2.878 15 H -0.267 1.267 16 H -0.281 1.281 17 H -0.268 1.268 18 C 0.057 3.943 19 H 0.036 0.964 20 C 0.091 3.909 21 O -0.598 6.598 22 H 0.068 0.932 23 H 0.072 0.928 24 H 0.059 0.941 25 H 0.081 0.919 26 H 0.091 0.909 27 H 0.035 0.965 28 H 0.074 0.926 29 H 0.067 0.933 30 H 0.016 0.984 31 H 0.046 0.954 32 H 0.047 0.953 33 H -0.015 1.015 34 H -0.016 1.016 35 H 0.253 0.747 36 H 0.074 0.926 37 H 0.056 0.944 38 H 0.391 0.609 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.526 10.912 -7.676 22.026 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.110 4.110 3 H 0.105 0.895 4 C -0.146 4.146 5 C -0.104 4.104 6 N -0.238 5.238 7 C -0.062 4.062 8 C -0.114 4.114 9 C -0.026 4.026 10 C -0.657 4.657 11 H 0.068 0.932 12 C -0.238 4.238 13 N -0.574 5.574 14 Si 0.942 3.058 15 H -0.192 1.192 16 H -0.206 1.206 17 H -0.193 1.193 18 C -0.051 4.051 19 H 0.055 0.945 20 C 0.014 3.986 21 O -0.406 6.406 22 H 0.087 0.913 23 H 0.091 0.909 24 H 0.078 0.922 25 H 0.100 0.900 26 H 0.109 0.891 27 H 0.053 0.947 28 H 0.093 0.907 29 H 0.085 0.915 30 H 0.034 0.966 31 H 0.065 0.935 32 H 0.066 0.934 33 H 0.003 0.997 34 H 0.003 0.997 35 H 0.062 0.938 36 H 0.092 0.908 37 H 0.075 0.925 38 H 0.241 0.759 Dipole moment (debyes) X Y Z Total from point charges -16.094 9.554 -7.604 20.202 hybrid contribution -0.773 1.737 0.396 1.942 sum -16.866 11.291 -7.208 21.539 Atomic orbital electron populations 1.21920 0.92538 1.02542 1.02975 1.21977 0.97953 0.98711 0.92342 0.89525 1.22576 0.96253 0.98711 0.97109 1.23346 0.97489 0.99145 0.90423 1.64652 1.20723 1.36132 1.02316 1.22120 0.90825 0.95885 0.97403 1.21169 0.96047 0.95788 0.98350 1.19133 0.93634 0.95496 0.94385 1.22482 1.16949 1.07209 1.19091 0.93162 1.27584 0.95435 1.07286 0.93451 1.70915 1.42802 1.15664 1.28042 0.82902 0.75909 0.70659 0.76371 1.19223 1.20603 1.19299 1.22595 0.95343 0.90946 0.96247 0.94550 1.22471 0.94434 0.96473 0.85223 1.86514 1.39355 1.79553 1.35165 0.91327 0.90942 0.92221 0.90049 0.89069 0.94662 0.90742 0.91484 0.96611 0.93525 0.93424 0.99659 0.99739 0.93779 0.90798 0.92537 0.75936 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.91 7.92 71.98 0.57 -1.34 16 2 C -0.09 -1.69 3.59 -9.92 -0.04 -1.73 16 3 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16 4 C -0.11 -2.13 6.61 31.80 0.21 -1.92 16 5 C 0.02 0.67 5.91 86.65 0.51 1.18 16 6 N -0.51 -16.87 4.86 -858.08 -4.17 -21.04 16 7 C 0.07 2.68 4.63 86.30 0.40 3.08 16 8 C -0.08 -3.56 5.24 30.59 0.16 -3.40 16 9 C 0.01 0.64 4.28 29.85 0.13 0.76 16 10 C -0.62 -37.99 9.11 25.60 0.23 -37.76 16 11 H 0.05 2.99 7.74 -2.91 -0.02 2.97 16 12 C -0.04 -2.49 5.46 84.65 0.46 -2.03 16 13 N -0.94 -61.10 13.65 21.45 0.29 -60.81 16 14 Si 1.12 52.30 29.90 68.60 2.05 54.35 16 15 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16 16 H -0.28 -12.93 7.11 99.48 0.71 -12.23 16 17 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 18 C 0.06 1.51 2.78 45.06 0.13 1.64 16 19 H 0.04 1.09 7.77 -2.39 -0.02 1.07 16 20 C 0.09 2.08 5.51 71.98 0.40 2.48 16 21 O -0.60 -16.60 12.17 -148.98 -1.81 -18.41 16 22 H 0.07 0.78 6.62 -2.39 -0.02 0.77 16 23 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 24 H 0.06 0.87 6.87 -2.39 -0.02 0.85 16 25 H 0.08 1.52 7.84 -2.38 -0.02 1.50 16 26 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 27 H 0.04 1.04 7.81 -2.39 -0.02 1.02 16 28 H 0.07 2.21 7.80 -2.39 -0.02 2.19 16 29 H 0.07 2.91 6.66 -2.39 -0.02 2.90 16 30 H 0.02 0.65 7.83 -2.39 -0.02 0.63 16 31 H 0.05 2.14 7.37 -2.39 -0.02 2.13 16 32 H 0.05 2.29 8.14 -2.39 -0.02 2.27 16 33 H -0.01 -0.91 8.01 -2.39 -0.02 -0.93 16 34 H -0.02 -0.95 8.01 -2.39 -0.02 -0.96 16 35 H 0.25 16.83 7.22 -92.71 -0.67 16.16 16 36 H 0.07 1.23 6.54 -2.39 -0.02 1.22 16 37 H 0.06 1.25 6.97 -2.39 -0.02 1.23 16 38 H 0.39 7.01 9.12 -74.06 -0.68 6.33 16 Total: -1.00 -73.86 295.70 -0.03 -73.89 By element: Atomic # 1 Polarization: 10.60 SS G_CDS: 0.45 Total: 11.05 kcal Atomic # 6 Polarization: -42.20 SS G_CDS: 3.16 Total: -39.03 kcal Atomic # 7 Polarization: -77.97 SS G_CDS: -3.88 Total: -81.85 kcal Atomic # 8 Polarization: -16.60 SS G_CDS: -1.81 Total: -18.41 kcal Atomic # 14 Polarization: 52.30 SS G_CDS: 2.05 Total: 54.35 kcal Total: -73.86 -0.03 -73.89 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000227008129.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.942 kcal (2) G-P(sol) polarization free energy of solvation -73.864 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.806 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.031 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.895 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.837 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds