Wall clock time and date at job start Sun Mar 29 2020 21:51:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.47224 * 2 1 4 4 H 1.09000 * 109.46948 * 181.76482 * 3 2 1 5 5 C 1.50699 * 109.47130 * 61.76266 * 3 2 1 6 6 H 1.08000 * 119.99764 * 244.97858 * 5 3 2 7 7 C 1.37876 * 120.00000 * 64.98385 * 5 3 2 8 8 N 1.31507 * 120.00018 * 9.72990 * 7 5 3 9 9 Si 1.86800 * 119.99655 * 189.45948 * 7 5 3 10 10 H 1.48508 * 109.47067 * 270.27044 * 9 7 5 11 11 H 1.48496 * 109.47412 * 30.26959 * 9 7 5 12 12 H 1.48508 * 109.47203 * 150.27285 * 9 7 5 13 13 N 1.46900 * 109.46887 * 301.76064 * 3 2 1 14 14 C 1.46893 * 111.00204 * 274.11515 * 13 3 2 15 15 C 1.52999 * 109.47342 * 184.32807 * 14 13 3 16 16 H 1.09007 * 110.33263 * 60.79142 * 15 14 13 17 17 C 1.54480 * 110.37556 * 183.16568 * 15 14 13 18 18 C 1.54505 * 104.06447 * 142.80901 * 17 15 14 19 19 C 1.54483 * 104.06449 * 359.97438 * 18 17 15 20 20 H 1.09002 * 110.37314 * 94.85261 * 19 18 17 21 21 C 1.52998 * 110.37131 * 217.18941 * 19 18 17 22 22 O 1.44425 * 110.37145 * 298.54650 * 15 14 13 23 23 H 1.09002 * 109.46902 * 64.51772 * 1 2 3 24 24 H 1.08997 * 109.47255 * 184.51197 * 1 2 3 25 25 H 1.08993 * 109.47192 * 304.51566 * 1 2 3 26 26 H 1.08995 * 109.47724 * 239.99043 * 2 1 3 27 27 H 1.09001 * 109.46971 * 119.99372 * 2 1 3 28 28 H 0.96998 * 120.00127 * 356.76500 * 8 7 5 29 29 H 1.00896 * 110.99883 * 150.15745 * 13 3 2 30 30 H 1.08999 * 109.47262 * 304.32631 * 14 13 3 31 31 H 1.09002 * 109.47488 * 64.32941 * 14 13 3 32 32 H 1.09002 * 110.50893 * 261.45436 * 17 15 14 33 33 H 1.08998 * 110.51183 * 24.16068 * 17 15 14 34 34 H 1.08999 * 110.51470 * 241.35206 * 18 17 15 35 35 H 1.09001 * 110.63032 * 118.70071 * 18 17 15 36 36 H 1.09005 * 109.46883 * 176.83063 * 21 19 18 37 37 H 1.08992 * 109.47469 * 296.83111 * 21 19 18 38 38 H 1.09002 * 109.47037 * 56.83512 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1296 1.4426 -0.0316 5 6 1.5737 2.1402 1.2517 6 1 0.8858 2.9699 1.1830 7 6 2.0253 1.7193 2.4845 8 7 3.0025 0.8426 2.5627 9 14 1.2543 2.4001 4.0439 10 1 1.9847 3.6229 4.4641 11 1 -0.1686 2.7375 3.7860 12 1 1.3341 1.3810 5.1212 13 7 1.5159 2.1471 -1.1776 14 6 2.3773 1.9303 -2.3475 15 6 1.8613 2.7635 -3.5224 16 1 1.8815 3.8242 -3.2722 17 6 2.7053 2.4905 -4.7871 18 6 1.6765 2.5238 -5.9394 19 6 0.3325 2.8122 -5.2346 20 1 0.1183 3.8809 -5.2486 21 6 -0.7993 2.0321 -5.9063 22 8 0.5219 2.3562 -3.8776 23 1 -0.3633 0.4421 -0.9277 24 1 -0.3633 -1.0244 0.0808 25 1 -0.3633 0.5823 0.8467 26 1 1.8934 -0.5139 -0.8898 27 1 1.8933 -0.5137 0.8901 28 1 3.3737 0.4568 1.7538 29 1 1.4031 3.1319 -0.9892 30 1 3.3972 2.2317 -2.1087 31 1 2.3644 0.8743 -2.6176 32 1 3.4548 3.2704 -4.9217 33 1 3.1789 1.5107 -4.7261 34 1 1.6415 1.5604 -6.4482 35 1 1.9163 3.3189 -6.6455 36 1 -1.7294 2.2019 -5.3638 37 1 -0.9125 2.3704 -6.9362 38 1 -0.5625 0.9682 -5.8973 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000227030978.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:51:07 Heat of formation + Delta-G solvation = -66.346344 kcal Electronic energy + Delta-G solvation = -16463.226462 eV Core-core repulsion = 13918.780262 eV Total energy + Delta-G solvation = -2544.446200 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.41388 -36.39459 -33.25451 -32.07418 -31.41454 -30.32828 -27.34270 -25.11128 -23.40849 -22.74256 -21.22355 -20.63472 -19.20814 -16.94178 -16.40674 -15.74246 -15.03478 -14.10908 -13.86890 -13.71145 -13.69607 -13.35651 -12.94132 -12.39584 -12.23319 -12.06406 -11.84557 -11.50307 -11.38118 -11.09471 -10.81082 -10.74907 -10.65800 -10.55231 -10.08626 -10.02235 -9.82827 -9.60682 -9.45893 -8.52825 -8.18406 -7.24517 -6.32426 -4.01612 3.44843 3.50477 3.65649 3.99025 4.54085 4.65636 4.68396 4.94471 5.00344 5.22026 5.37497 5.41180 5.53342 5.56744 5.57922 5.71987 5.78069 5.89186 6.01549 6.06081 6.14193 6.18655 6.35957 6.44977 6.53135 6.71706 7.05303 7.12605 7.20198 7.34556 7.56206 7.64490 7.96301 8.18107 8.59384 8.66011 8.92491 9.69200 11.05151 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.042550 B = 0.005926 C = 0.005797 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 657.885484 B = 4723.601903 C = 4828.581933 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.104 4.104 3 C 0.203 3.797 4 H -0.010 1.010 5 C -0.594 4.594 6 H 0.053 0.947 7 C 0.023 3.977 8 N -0.911 5.911 9 Si 1.068 2.932 10 H -0.290 1.290 11 H -0.288 1.288 12 H -0.285 1.285 13 N -0.670 5.670 14 C 0.067 3.933 15 C 0.080 3.920 16 H 0.062 0.938 17 C -0.151 4.151 18 C -0.149 4.149 19 C 0.063 3.937 20 H 0.062 0.938 21 C -0.144 4.144 22 O -0.344 6.344 23 H 0.051 0.949 24 H 0.015 0.985 25 H 0.058 0.942 26 H 0.017 0.983 27 H 0.056 0.944 28 H 0.270 0.730 29 H 0.332 0.668 30 H 0.030 0.970 31 H 0.068 0.932 32 H 0.072 0.928 33 H 0.075 0.925 34 H 0.073 0.927 35 H 0.070 0.930 36 H 0.063 0.937 37 H 0.064 0.936 38 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.498 3.342 -15.261 15.821 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.143 4.143 3 C 0.095 3.905 4 H 0.008 0.992 5 C -0.632 4.632 6 H 0.072 0.928 7 C -0.182 4.182 8 N -0.548 5.548 9 Si 0.897 3.103 10 H -0.217 1.217 11 H -0.214 1.214 12 H -0.210 1.210 13 N -0.301 5.301 14 C -0.063 4.063 15 C 0.022 3.978 16 H 0.080 0.920 17 C -0.189 4.189 18 C -0.187 4.187 19 C 0.005 3.995 20 H 0.080 0.920 21 C -0.201 4.201 22 O -0.262 6.262 23 H 0.070 0.930 24 H 0.035 0.965 25 H 0.077 0.923 26 H 0.036 0.964 27 H 0.075 0.925 28 H 0.082 0.918 29 H 0.149 0.851 30 H 0.048 0.952 31 H 0.087 0.913 32 H 0.091 0.909 33 H 0.094 0.906 34 H 0.092 0.908 35 H 0.089 0.911 36 H 0.082 0.918 37 H 0.083 0.917 38 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -2.999 2.663 -13.624 14.201 hybrid contribution 0.934 0.701 -1.639 2.012 sum -2.065 3.363 -15.262 15.764 Atomic orbital electron populations 1.21420 0.96431 0.97676 1.02168 1.21468 0.96392 0.98260 0.98143 1.19261 0.91995 0.91445 0.87803 0.99236 1.21983 1.31044 1.18432 0.91777 0.92842 1.25705 0.94803 0.96094 1.01588 1.70764 1.22217 1.28968 1.32814 0.83562 0.75606 0.75830 0.75310 1.21694 1.21358 1.21038 1.60519 1.49300 1.15743 1.04511 1.22013 0.93997 0.99525 0.90814 1.23036 0.82491 0.98018 0.94270 0.92026 1.22970 0.98432 1.02860 0.94671 1.22987 0.95204 1.02398 0.98140 1.22943 0.94901 0.97830 0.83842 0.92005 1.21763 0.98116 1.00741 0.99486 1.89340 1.30919 1.78892 1.27087 0.92997 0.96549 0.92303 0.96404 0.92513 0.91844 0.85064 0.95185 0.91344 0.90906 0.90603 0.90836 0.91081 0.91827 0.91723 0.91904 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.78 9.52 37.16 0.35 -2.42 16 2 C -0.10 -2.56 5.49 -26.73 -0.15 -2.71 16 3 C 0.20 5.17 1.93 -68.86 -0.13 5.04 16 4 H -0.01 -0.27 7.08 -51.93 -0.37 -0.64 16 5 C -0.59 -16.49 7.24 -34.44 -0.25 -16.74 16 6 H 0.05 1.50 7.67 -52.49 -0.40 1.09 16 7 C 0.02 0.64 5.18 -17.82 -0.09 0.55 16 8 N -0.91 -27.32 13.05 55.43 0.72 -26.59 16 9 Si 1.07 25.34 29.91 -169.99 -5.08 20.26 16 10 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 11 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 12 H -0.28 -6.76 7.11 56.52 0.40 -6.35 16 13 N -0.67 -14.79 5.50 -107.96 -0.59 -15.38 16 14 C 0.07 1.24 5.17 -3.83 -0.02 1.22 16 15 C 0.08 1.24 3.45 -25.96 -0.09 1.15 16 16 H 0.06 0.93 8.14 -51.92 -0.42 0.51 16 17 C -0.15 -1.84 6.63 -25.16 -0.17 -2.01 16 18 C -0.15 -1.61 6.63 -25.16 -0.17 -1.77 16 19 C 0.06 0.79 3.92 -25.95 -0.10 0.69 16 20 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 21 C -0.14 -1.55 9.52 37.16 0.35 -1.20 16 22 O -0.34 -5.82 10.95 -35.23 -0.39 -6.20 16 23 H 0.05 1.19 7.71 -51.93 -0.40 0.79 16 24 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 25 H 0.06 1.46 7.12 -51.93 -0.37 1.09 16 26 H 0.02 0.40 7.64 -51.93 -0.40 0.01 16 27 H 0.06 1.51 6.37 -51.93 -0.33 1.18 16 28 H 0.27 8.11 6.02 -40.82 -0.25 7.86 16 29 H 0.33 7.31 8.18 -39.29 -0.32 6.99 16 30 H 0.03 0.56 7.95 -51.93 -0.41 0.14 16 31 H 0.07 1.32 7.62 -51.93 -0.40 0.93 16 32 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 33 H 0.08 0.93 7.86 -51.93 -0.41 0.52 16 34 H 0.07 0.75 7.86 -51.93 -0.41 0.34 16 35 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 36 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 37 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 38 H 0.06 0.70 8.12 -51.93 -0.42 0.28 16 LS Contribution 299.60 15.07 4.51 4.51 Total: -1.00 -30.18 299.60 -7.92 -38.11 By element: Atomic # 1 Polarization: 10.13 SS G_CDS: -6.64 Total: 3.50 kcal Atomic # 6 Polarization: -17.74 SS G_CDS: -0.46 Total: -18.20 kcal Atomic # 7 Polarization: -42.10 SS G_CDS: 0.13 Total: -41.97 kcal Atomic # 8 Polarization: -5.82 SS G_CDS: -0.39 Total: -6.20 kcal Atomic # 14 Polarization: 25.34 SS G_CDS: -5.08 Total: 20.26 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -30.18 -7.92 -38.11 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000227030978.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.241 kcal (2) G-P(sol) polarization free energy of solvation -30.185 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.426 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.920 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.105 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.346 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds