Wall clock time and date at job start Sun Mar 29 2020 21:51:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.47224 * 2 1 4 4 H 1.09000 * 109.46948 * 181.76482 * 3 2 1 5 5 C 1.50699 * 109.47130 * 61.76266 * 3 2 1 6 6 H 1.08000 * 119.99764 * 244.97858 * 5 3 2 7 7 C 1.37876 * 120.00000 * 64.98385 * 5 3 2 8 8 N 1.31507 * 120.00018 * 9.72990 * 7 5 3 9 9 Si 1.86800 * 119.99655 * 189.45948 * 7 5 3 10 10 H 1.48508 * 109.47067 * 270.27044 * 9 7 5 11 11 H 1.48496 * 109.47412 * 30.26959 * 9 7 5 12 12 H 1.48508 * 109.47203 * 150.27285 * 9 7 5 13 13 N 1.46900 * 109.46887 * 301.76064 * 3 2 1 14 14 C 1.46893 * 111.00204 * 274.11515 * 13 3 2 15 15 C 1.52999 * 109.47342 * 184.32807 * 14 13 3 16 16 H 1.09007 * 110.33263 * 60.79142 * 15 14 13 17 17 C 1.54480 * 110.37556 * 183.16568 * 15 14 13 18 18 C 1.54505 * 104.06447 * 142.80901 * 17 15 14 19 19 C 1.54483 * 104.06449 * 359.97438 * 18 17 15 20 20 H 1.09002 * 110.37314 * 94.85261 * 19 18 17 21 21 C 1.52998 * 110.37131 * 217.18941 * 19 18 17 22 22 O 1.44425 * 110.37145 * 298.54650 * 15 14 13 23 23 H 1.09002 * 109.46902 * 64.51772 * 1 2 3 24 24 H 1.08997 * 109.47255 * 184.51197 * 1 2 3 25 25 H 1.08993 * 109.47192 * 304.51566 * 1 2 3 26 26 H 1.08995 * 109.47724 * 239.99043 * 2 1 3 27 27 H 1.09001 * 109.46971 * 119.99372 * 2 1 3 28 28 H 0.96998 * 120.00127 * 356.76500 * 8 7 5 29 29 H 1.00896 * 110.99883 * 150.15745 * 13 3 2 30 30 H 1.08999 * 109.47262 * 304.32631 * 14 13 3 31 31 H 1.09002 * 109.47488 * 64.32941 * 14 13 3 32 32 H 1.09002 * 110.50893 * 261.45436 * 17 15 14 33 33 H 1.08998 * 110.51183 * 24.16068 * 17 15 14 34 34 H 1.08999 * 110.51470 * 241.35206 * 18 17 15 35 35 H 1.09001 * 110.63032 * 118.70071 * 18 17 15 36 36 H 1.09005 * 109.46883 * 176.83063 * 21 19 18 37 37 H 1.08992 * 109.47469 * 296.83111 * 21 19 18 38 38 H 1.09002 * 109.47037 * 56.83512 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1296 1.4426 -0.0316 5 6 1.5737 2.1402 1.2517 6 1 0.8858 2.9699 1.1830 7 6 2.0253 1.7193 2.4845 8 7 3.0025 0.8426 2.5627 9 14 1.2543 2.4001 4.0439 10 1 1.9847 3.6229 4.4641 11 1 -0.1686 2.7375 3.7860 12 1 1.3341 1.3810 5.1212 13 7 1.5159 2.1471 -1.1776 14 6 2.3773 1.9303 -2.3475 15 6 1.8613 2.7635 -3.5224 16 1 1.8815 3.8242 -3.2722 17 6 2.7053 2.4905 -4.7871 18 6 1.6765 2.5238 -5.9394 19 6 0.3325 2.8122 -5.2346 20 1 0.1183 3.8809 -5.2486 21 6 -0.7993 2.0321 -5.9063 22 8 0.5219 2.3562 -3.8776 23 1 -0.3633 0.4421 -0.9277 24 1 -0.3633 -1.0244 0.0808 25 1 -0.3633 0.5823 0.8467 26 1 1.8934 -0.5139 -0.8898 27 1 1.8933 -0.5137 0.8901 28 1 3.3737 0.4568 1.7538 29 1 1.4031 3.1319 -0.9892 30 1 3.3972 2.2317 -2.1087 31 1 2.3644 0.8743 -2.6176 32 1 3.4548 3.2704 -4.9217 33 1 3.1789 1.5107 -4.7261 34 1 1.6415 1.5604 -6.4482 35 1 1.9163 3.3189 -6.6455 36 1 -1.7294 2.2019 -5.3638 37 1 -0.9125 2.3704 -6.9362 38 1 -0.5625 0.9682 -5.8973 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000227030978.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:51:07 Heat of formation + Delta-G solvation = -85.878377 kcal Electronic energy + Delta-G solvation = -16464.073435 eV Core-core repulsion = 13918.780262 eV Total energy + Delta-G solvation = -2545.293173 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.53669 -38.28256 -34.98266 -33.18419 -33.07201 -31.86384 -28.85645 -26.85586 -25.39844 -24.05844 -22.38484 -21.70748 -21.20111 -18.96229 -17.49050 -16.98541 -16.40688 -15.97638 -15.62989 -15.38199 -15.16237 -14.66157 -14.24269 -13.92656 -13.83652 -13.40356 -13.18236 -13.02491 -12.76177 -12.62894 -12.48234 -12.14106 -11.96075 -11.94510 -11.73840 -11.68580 -11.55270 -11.45791 -10.65013 -10.61023 -10.33110 -9.08467 -8.58957 -6.28755 1.53709 1.62731 1.80452 2.57323 2.91194 3.21730 3.44284 3.69454 3.84064 3.98602 4.07729 4.32383 4.35609 4.40466 4.50485 4.55204 4.59055 4.59916 4.75208 4.78081 4.89801 4.93429 5.01995 5.06749 5.15795 5.19469 5.21277 5.29878 5.36556 5.52884 5.68780 5.89317 6.08542 6.10763 6.50079 6.61851 6.83846 7.50541 8.78644 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.042550 B = 0.005926 C = 0.005797 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 657.885484 B = 4723.601903 C = 4828.581933 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.099 4.099 3 C 0.207 3.793 4 H -0.040 1.040 5 C -0.600 4.600 6 H 0.048 0.952 7 C -0.024 4.024 8 N -0.934 5.934 9 Si 1.113 2.887 10 H -0.275 1.275 11 H -0.273 1.273 12 H -0.285 1.285 13 N -0.669 5.669 14 C 0.068 3.932 15 C 0.082 3.918 16 H 0.065 0.935 17 C -0.147 4.147 18 C -0.141 4.141 19 C 0.052 3.948 20 H 0.070 0.930 21 C -0.141 4.141 22 O -0.380 6.380 23 H 0.053 0.947 24 H 0.039 0.961 25 H 0.039 0.961 26 H 0.029 0.971 27 H 0.032 0.968 28 H 0.258 0.742 29 H 0.331 0.669 30 H 0.030 0.970 31 H 0.058 0.942 32 H 0.093 0.907 33 H 0.072 0.928 34 H 0.080 0.920 35 H 0.097 0.903 36 H 0.053 0.947 37 H 0.093 0.907 38 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.167 4.136 -16.671 17.466 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.138 4.138 3 C 0.098 3.902 4 H -0.023 1.023 5 C -0.638 4.638 6 H 0.067 0.933 7 C -0.223 4.223 8 N -0.572 5.572 9 Si 0.936 3.064 10 H -0.201 1.201 11 H -0.198 1.198 12 H -0.210 1.210 13 N -0.300 5.300 14 C -0.062 4.062 15 C 0.024 3.976 16 H 0.083 0.917 17 C -0.185 4.185 18 C -0.179 4.179 19 C -0.005 4.005 20 H 0.088 0.912 21 C -0.198 4.198 22 O -0.300 6.300 23 H 0.072 0.928 24 H 0.058 0.942 25 H 0.058 0.942 26 H 0.047 0.953 27 H 0.051 0.949 28 H 0.068 0.932 29 H 0.148 0.852 30 H 0.048 0.952 31 H 0.077 0.923 32 H 0.111 0.889 33 H 0.091 0.909 34 H 0.098 0.902 35 H 0.116 0.884 36 H 0.072 0.928 37 H 0.112 0.888 38 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -3.669 3.465 -15.072 15.895 hybrid contribution 1.139 0.457 -1.280 1.773 sum -2.530 3.922 -16.352 17.005 Atomic orbital electron populations 1.21281 0.95023 0.98843 1.01289 1.21370 0.97485 0.97497 0.97446 1.19108 0.90167 0.92270 0.88673 1.02287 1.22239 1.30443 1.18232 0.92886 0.93327 1.27061 0.94491 0.95781 1.04972 1.70883 1.23692 1.30439 1.32154 0.82976 0.75717 0.75747 0.71971 1.20115 1.19792 1.21045 1.60465 1.49954 1.15330 1.04206 1.22043 0.93661 0.99734 0.90735 1.22972 0.83031 0.97239 0.94375 0.91687 1.22958 0.98739 1.03406 0.93405 1.22975 0.93301 1.03820 0.97759 1.23240 0.96544 0.98510 0.82207 0.91185 1.21782 0.97001 1.00182 1.00864 1.89295 1.31406 1.79509 1.29741 0.92836 0.94186 0.94189 0.95261 0.94942 0.93201 0.85214 0.95244 0.92305 0.88888 0.90940 0.90170 0.88426 0.92798 0.88807 0.92633 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.92 9.52 71.98 0.69 -4.23 16 2 C -0.10 -4.95 5.49 30.59 0.17 -4.78 16 3 C 0.21 10.75 1.93 44.17 0.09 10.84 16 4 H -0.04 -2.30 7.08 -2.39 -0.02 -2.32 16 5 C -0.60 -33.69 7.24 25.60 0.19 -33.50 16 6 H 0.05 2.73 7.67 -2.91 -0.02 2.71 16 7 C -0.02 -1.38 5.18 84.66 0.44 -0.94 16 8 N -0.93 -57.03 13.05 21.45 0.28 -56.75 16 9 Si 1.11 50.77 29.91 68.60 2.05 52.82 16 10 H -0.28 -11.85 7.11 99.48 0.71 -11.14 16 11 H -0.27 -11.69 7.11 99.48 0.71 -10.99 16 12 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 13 N -0.67 -29.81 5.50 -495.46 -2.72 -32.54 16 14 C 0.07 2.53 5.17 86.30 0.45 2.98 16 15 C 0.08 2.45 3.45 31.10 0.11 2.56 16 16 H 0.07 1.89 8.14 -2.38 -0.02 1.87 16 17 C -0.15 -3.25 6.63 31.61 0.21 -3.04 16 18 C -0.14 -2.59 6.63 31.61 0.21 -2.38 16 19 C 0.05 1.20 3.92 31.10 0.12 1.32 16 20 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 21 C -0.14 -2.76 9.52 71.98 0.69 -2.07 16 22 O -0.38 -12.49 10.95 -148.98 -1.63 -14.12 16 23 H 0.05 2.41 7.71 -2.39 -0.02 2.39 16 24 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 25 H 0.04 1.96 7.12 -2.39 -0.02 1.94 16 26 H 0.03 1.35 7.64 -2.39 -0.02 1.34 16 27 H 0.03 1.76 6.37 -2.39 -0.02 1.74 16 28 H 0.26 16.00 6.02 -92.71 -0.56 15.44 16 29 H 0.33 14.71 8.18 -89.70 -0.73 13.97 16 30 H 0.03 1.10 7.95 -2.39 -0.02 1.08 16 31 H 0.06 2.28 7.62 -2.39 -0.02 2.27 16 32 H 0.09 1.68 8.14 -2.39 -0.02 1.66 16 33 H 0.07 1.65 7.86 -2.39 -0.02 1.63 16 34 H 0.08 1.38 7.86 -2.39 -0.02 1.36 16 35 H 0.10 1.30 8.14 -2.39 -0.02 1.28 16 36 H 0.05 1.14 8.14 -2.38 -0.02 1.12 16 37 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 38 H 0.05 1.15 8.12 -2.39 -0.02 1.13 16 Total: -1.00 -65.09 299.60 1.81 -63.28 By element: Atomic # 1 Polarization: 20.07 SS G_CDS: 0.49 Total: 20.56 kcal Atomic # 6 Polarization: -36.59 SS G_CDS: 3.34 Total: -33.25 kcal Atomic # 7 Polarization: -86.84 SS G_CDS: -2.45 Total: -89.29 kcal Atomic # 8 Polarization: -12.49 SS G_CDS: -1.63 Total: -14.12 kcal Atomic # 14 Polarization: 50.77 SS G_CDS: 2.05 Total: 52.82 kcal Total: -65.09 1.81 -63.28 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000227030978.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.601 kcal (2) G-P(sol) polarization free energy of solvation -65.086 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.687 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.809 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.278 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.878 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds