Wall clock time and date at job start Sun Mar 29 2020 21:50:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52996 * 109.47305 * 2 1 4 4 H 1.09004 * 109.46955 * 304.24096 * 3 2 1 5 5 C 1.50703 * 109.46946 * 184.24245 * 3 2 1 6 6 H 1.08003 * 119.99929 * 245.40540 * 5 3 2 7 7 C 1.37874 * 120.00257 * 65.40970 * 5 3 2 8 8 N 1.31507 * 120.00317 * 193.88001 * 7 5 3 9 9 Si 1.86807 * 119.99924 * 13.87783 * 7 5 3 10 10 H 1.48493 * 109.47197 * 84.19227 * 9 7 5 11 11 H 1.48501 * 109.47218 * 204.19401 * 9 7 5 12 12 H 1.48505 * 109.47027 * 324.19515 * 9 7 5 13 13 N 1.46896 * 109.47592 * 64.24231 * 3 2 1 14 14 C 1.46904 * 111.00220 * 262.12608 * 13 3 2 15 15 C 1.52992 * 109.47152 * 175.26105 * 14 13 3 16 16 H 1.09001 * 110.54218 * 303.83936 * 15 14 13 17 17 C 1.54273 * 110.48782 * 66.45360 * 15 14 13 18 18 C 1.53874 * 106.59818 * 142.28485 * 17 15 14 19 19 C 1.54265 * 106.64303 * 359.97370 * 18 17 15 20 20 H 1.09004 * 110.48085 * 95.09315 * 19 18 17 21 21 O 1.42900 * 110.48913 * 217.73494 * 19 18 17 22 22 C 1.54894 * 110.48647 * 181.22404 * 15 14 13 23 23 H 1.09005 * 109.47244 * 57.39993 * 1 2 3 24 24 H 1.08997 * 109.47684 * 177.39744 * 1 2 3 25 25 H 1.09004 * 109.47186 * 297.40223 * 1 2 3 26 26 H 1.09000 * 109.47423 * 239.99483 * 2 1 3 27 27 H 1.09008 * 109.47004 * 119.99840 * 2 1 3 28 28 H 0.97007 * 120.00361 * 180.02562 * 8 7 5 29 29 H 1.00911 * 110.99648 * 26.07179 * 13 3 2 30 30 H 1.09004 * 109.47090 * 55.25757 * 14 13 3 31 31 H 1.09000 * 109.46220 * 295.26464 * 14 13 3 32 32 H 1.09004 * 110.03082 * 22.99970 * 17 15 14 33 33 H 1.08997 * 110.06971 * 261.59141 * 17 15 14 34 34 H 1.08995 * 110.03113 * 119.28456 * 18 17 15 35 35 H 1.09007 * 110.02821 * 240.66613 * 18 17 15 36 36 H 0.96697 * 113.99859 * 298.55232 * 21 19 18 37 37 H 1.08999 * 110.75176 * 321.69878 * 22 15 14 38 38 H 1.09007 * 110.75287 * 84.87783 * 22 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6159 1.9778 -0.8496 5 6 3.5433 1.4436 -0.1051 6 1 4.1417 1.8123 0.7150 7 6 4.1549 0.9743 -1.2482 8 7 5.4447 0.7176 -1.2459 9 14 3.1513 0.7028 -2.8002 10 1 3.0301 1.9837 -3.5416 11 1 3.8280 -0.3032 -3.6576 12 1 1.7981 0.2122 -2.4352 13 7 1.6358 2.1048 1.2473 14 6 0.4222 2.9080 1.0476 15 6 -0.0340 3.4851 2.3891 16 1 -0.1870 2.6877 3.1163 17 6 0.9959 4.5059 2.9159 18 6 0.1924 5.6398 3.5766 19 6 -1.2978 5.2698 3.4283 20 1 -1.6554 4.7609 4.3234 21 8 -2.0797 6.4376 3.1693 22 6 -1.3313 4.3123 2.2104 23 1 -0.3634 0.5537 -0.8658 24 1 -0.3634 -1.0265 -0.0467 25 1 -0.3634 0.4730 0.9124 26 1 1.8933 -0.5139 -0.8899 27 1 1.8933 -0.5138 0.8901 28 1 5.8750 0.3877 -2.0503 29 1 1.5064 1.4322 1.9884 30 1 -0.3666 2.2783 0.6359 31 1 0.6355 3.7224 0.3552 32 1 1.5874 4.8999 2.0895 33 1 1.6485 4.0338 3.6502 34 1 0.4546 5.7174 4.6317 35 1 0.3948 6.5842 3.0714 36 1 -2.0469 7.0974 3.8754 37 1 -1.3054 4.8745 1.2769 38 1 -2.2090 3.6668 2.2466 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000227700353.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:50:57 Heat of formation + Delta-G solvation = -67.452160 kcal Electronic energy + Delta-G solvation = -16338.359385 eV Core-core repulsion = 13793.865233 eV Total energy + Delta-G solvation = -2544.494152 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -38.91774 -36.86560 -35.14262 -32.32081 -31.23630 -29.06605 -28.05388 -26.55050 -23.33794 -22.11504 -20.68969 -20.05661 -19.52170 -17.21129 -16.62089 -15.97238 -15.03159 -14.83320 -14.31044 -14.00638 -13.53002 -13.38151 -13.02054 -12.55927 -12.33889 -11.93636 -11.75257 -11.55130 -11.37045 -11.17180 -10.82895 -10.78971 -10.67811 -10.43336 -10.24978 -10.18596 -9.95272 -9.86125 -9.34396 -9.23200 -8.36056 -7.26429 -6.02187 -3.94523 3.30515 3.38655 3.41241 4.08991 4.46496 4.63813 4.69066 4.98262 5.14111 5.24783 5.36831 5.46492 5.63935 5.66176 5.75042 5.79360 5.85326 5.88187 5.95036 6.02792 6.11201 6.16409 6.26188 6.33258 6.49135 6.56428 6.59506 6.70453 6.80617 6.92296 7.23186 7.54960 7.80241 7.99568 8.41129 8.76685 9.14060 9.64240 11.11466 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.038679 B = 0.006131 C = 0.005786 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 723.739927 B = 4565.704613 C = 4838.243520 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.155 4.155 3 C 0.192 3.808 4 H 0.023 0.977 5 C -0.497 4.497 6 H 0.080 0.920 7 C 0.070 3.930 8 N -0.898 5.898 9 Si 0.858 3.142 10 H -0.280 1.280 11 H -0.290 1.290 12 H -0.253 1.253 13 N -0.669 5.669 14 C 0.060 3.940 15 C -0.088 4.088 16 H 0.070 0.930 17 C -0.104 4.104 18 C -0.160 4.160 19 C 0.096 3.904 20 H 0.058 0.942 21 O -0.568 6.568 22 C -0.110 4.110 23 H 0.044 0.956 24 H 0.040 0.960 25 H 0.047 0.953 26 H 0.064 0.936 27 H 0.057 0.943 28 H 0.262 0.738 29 H 0.326 0.674 30 H 0.026 0.974 31 H 0.066 0.934 32 H 0.074 0.926 33 H 0.066 0.934 34 H 0.060 0.940 35 H 0.070 0.930 36 H 0.374 0.626 37 H 0.077 0.923 38 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.593 6.076 8.359 17.075 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.195 4.195 3 C 0.083 3.917 4 H 0.041 0.959 5 C -0.535 4.535 6 H 0.098 0.902 7 C -0.131 4.131 8 N -0.536 5.536 9 Si 0.685 3.315 10 H -0.206 1.206 11 H -0.216 1.216 12 H -0.178 1.178 13 N -0.299 5.299 14 C -0.069 4.069 15 C -0.107 4.107 16 H 0.089 0.911 17 C -0.142 4.142 18 C -0.198 4.198 19 C 0.038 3.962 20 H 0.076 0.924 21 O -0.373 6.373 22 C -0.149 4.149 23 H 0.063 0.937 24 H 0.059 0.941 25 H 0.066 0.934 26 H 0.082 0.918 27 H 0.075 0.925 28 H 0.072 0.928 29 H 0.143 0.857 30 H 0.044 0.956 31 H 0.084 0.916 32 H 0.093 0.907 33 H 0.085 0.915 34 H 0.079 0.921 35 H 0.089 0.911 36 H 0.221 0.779 37 H 0.096 0.904 38 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -13.120 6.219 7.596 16.386 hybrid contribution -0.909 -0.626 -0.504 1.213 sum -14.029 5.593 7.092 16.685 Atomic orbital electron populations 1.21986 0.98603 1.00073 1.00559 1.22697 0.92727 1.01864 1.02167 1.19531 0.96522 0.87996 0.87612 0.95943 1.20995 0.88996 1.40741 1.02781 0.90239 1.24903 0.94698 0.94924 0.98567 1.69952 1.10241 1.44990 1.28446 0.87360 0.81680 0.78144 0.84274 1.20597 1.21632 1.17796 1.60644 1.31451 1.28772 1.09004 1.22158 0.92036 0.97512 0.95218 1.21959 0.93675 0.97187 0.97832 0.91124 1.21963 0.97201 0.94434 1.00576 1.22935 0.95671 1.00369 1.00820 1.22757 0.89751 0.85953 0.97777 0.92372 1.86523 1.71591 1.30851 1.48325 1.22499 0.97777 0.96599 0.97976 0.93696 0.94113 0.93376 0.91783 0.92468 0.92836 0.85725 0.95590 0.91605 0.90681 0.91513 0.92082 0.91130 0.77946 0.90447 0.91479 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.68 8.66 37.15 0.32 -2.36 16 2 C -0.16 -3.27 4.62 -26.74 -0.12 -3.40 16 3 C 0.19 4.44 1.79 -68.87 -0.12 4.32 16 4 H 0.02 0.54 6.42 -51.93 -0.33 0.21 16 5 C -0.50 -13.95 9.28 -34.44 -0.32 -14.27 16 6 H 0.08 2.47 8.06 -52.48 -0.42 2.05 16 7 C 0.07 2.02 5.36 -17.82 -0.10 1.93 16 8 N -0.90 -27.56 13.96 55.43 0.77 -26.78 16 9 Si 0.86 21.20 25.87 -169.99 -4.40 16.80 16 10 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 11 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 12 H -0.25 -5.84 5.35 56.52 0.30 -5.53 16 13 N -0.67 -13.20 5.90 -107.95 -0.64 -13.83 16 14 C 0.06 1.00 4.33 -3.83 -0.02 0.98 16 15 C -0.09 -1.18 3.00 -88.96 -0.27 -1.45 16 16 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 17 C -0.10 -1.41 6.18 -25.61 -0.16 -1.57 16 18 C -0.16 -1.78 6.55 -25.61 -0.17 -1.95 16 19 C 0.10 1.07 4.24 -25.03 -0.11 0.96 16 20 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 21 O -0.57 -6.32 13.38 -35.23 -0.47 -6.79 16 22 C -0.11 -1.37 6.04 -24.70 -0.15 -1.52 16 23 H 0.04 0.78 8.12 -51.93 -0.42 0.36 16 24 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 25 H 0.05 0.76 6.20 -51.93 -0.32 0.43 16 26 H 0.06 1.45 4.73 -51.93 -0.25 1.21 16 27 H 0.06 1.19 8.05 -51.92 -0.42 0.77 16 28 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 29 H 0.33 6.02 8.06 -39.29 -0.32 5.70 16 30 H 0.03 0.42 5.55 -51.93 -0.29 0.13 16 31 H 0.07 1.17 8.05 -51.93 -0.42 0.75 16 32 H 0.07 1.17 7.77 -51.93 -0.40 0.76 16 33 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 34 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.07 0.80 8.07 -51.92 -0.42 0.38 16 36 H 0.37 2.48 9.11 45.56 0.41 2.90 16 37 H 0.08 1.04 8.06 -51.93 -0.42 0.62 16 38 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 LS Contribution 292.10 15.07 4.40 4.40 Total: -1.00 -30.71 292.10 -7.32 -38.02 By element: Atomic # 1 Polarization: 12.29 SS G_CDS: -5.78 Total: 6.51 kcal Atomic # 6 Polarization: -17.12 SS G_CDS: -1.21 Total: -18.33 kcal Atomic # 7 Polarization: -40.76 SS G_CDS: 0.14 Total: -40.62 kcal Atomic # 8 Polarization: -6.32 SS G_CDS: -0.47 Total: -6.79 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -4.40 Total: 16.80 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -30.71 -7.32 -38.02 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000227700353.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.429 kcal (2) G-P(sol) polarization free energy of solvation -30.705 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.134 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.318 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.023 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.452 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds