Wall clock time and date at job start Sun Mar 29 2020 21:50:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52996 * 109.47305 * 2 1 4 4 H 1.09004 * 109.46955 * 304.24096 * 3 2 1 5 5 C 1.50703 * 109.46946 * 184.24245 * 3 2 1 6 6 H 1.08003 * 119.99929 * 245.40540 * 5 3 2 7 7 C 1.37874 * 120.00257 * 65.40970 * 5 3 2 8 8 N 1.31507 * 120.00317 * 193.88001 * 7 5 3 9 9 Si 1.86807 * 119.99924 * 13.87783 * 7 5 3 10 10 H 1.48493 * 109.47197 * 84.19227 * 9 7 5 11 11 H 1.48501 * 109.47218 * 204.19401 * 9 7 5 12 12 H 1.48505 * 109.47027 * 324.19515 * 9 7 5 13 13 N 1.46896 * 109.47592 * 64.24231 * 3 2 1 14 14 C 1.46904 * 111.00220 * 262.12608 * 13 3 2 15 15 C 1.52992 * 109.47152 * 175.26105 * 14 13 3 16 16 H 1.09001 * 110.54218 * 303.83936 * 15 14 13 17 17 C 1.54273 * 110.48782 * 66.45360 * 15 14 13 18 18 C 1.53874 * 106.59818 * 142.28485 * 17 15 14 19 19 C 1.54265 * 106.64303 * 359.97370 * 18 17 15 20 20 H 1.09004 * 110.48085 * 95.09315 * 19 18 17 21 21 O 1.42900 * 110.48913 * 217.73494 * 19 18 17 22 22 C 1.54894 * 110.48647 * 181.22404 * 15 14 13 23 23 H 1.09005 * 109.47244 * 57.39993 * 1 2 3 24 24 H 1.08997 * 109.47684 * 177.39744 * 1 2 3 25 25 H 1.09004 * 109.47186 * 297.40223 * 1 2 3 26 26 H 1.09000 * 109.47423 * 239.99483 * 2 1 3 27 27 H 1.09008 * 109.47004 * 119.99840 * 2 1 3 28 28 H 0.97007 * 120.00361 * 180.02562 * 8 7 5 29 29 H 1.00911 * 110.99648 * 26.07179 * 13 3 2 30 30 H 1.09004 * 109.47090 * 55.25757 * 14 13 3 31 31 H 1.09000 * 109.46220 * 295.26464 * 14 13 3 32 32 H 1.09004 * 110.03082 * 22.99970 * 17 15 14 33 33 H 1.08997 * 110.06971 * 261.59141 * 17 15 14 34 34 H 1.08995 * 110.03113 * 119.28456 * 18 17 15 35 35 H 1.09007 * 110.02821 * 240.66613 * 18 17 15 36 36 H 0.96697 * 113.99859 * 298.55232 * 21 19 18 37 37 H 1.08999 * 110.75176 * 321.69878 * 22 15 14 38 38 H 1.09007 * 110.75287 * 84.87783 * 22 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6159 1.9778 -0.8496 5 6 3.5433 1.4436 -0.1051 6 1 4.1417 1.8123 0.7150 7 6 4.1549 0.9743 -1.2482 8 7 5.4447 0.7176 -1.2459 9 14 3.1513 0.7028 -2.8002 10 1 3.0301 1.9837 -3.5416 11 1 3.8280 -0.3032 -3.6576 12 1 1.7981 0.2122 -2.4352 13 7 1.6358 2.1048 1.2473 14 6 0.4222 2.9080 1.0476 15 6 -0.0340 3.4851 2.3891 16 1 -0.1870 2.6877 3.1163 17 6 0.9959 4.5059 2.9159 18 6 0.1924 5.6398 3.5766 19 6 -1.2978 5.2698 3.4283 20 1 -1.6554 4.7609 4.3234 21 8 -2.0797 6.4376 3.1693 22 6 -1.3313 4.3123 2.2104 23 1 -0.3634 0.5537 -0.8658 24 1 -0.3634 -1.0265 -0.0467 25 1 -0.3634 0.4730 0.9124 26 1 1.8933 -0.5139 -0.8899 27 1 1.8933 -0.5138 0.8901 28 1 5.8750 0.3877 -2.0503 29 1 1.5064 1.4322 1.9884 30 1 -0.3666 2.2783 0.6359 31 1 0.6355 3.7224 0.3552 32 1 1.5874 4.8999 2.0895 33 1 1.6485 4.0338 3.6502 34 1 0.4546 5.7174 4.6317 35 1 0.3948 6.5842 3.0714 36 1 -2.0469 7.0974 3.8754 37 1 -1.3054 4.8745 1.2769 38 1 -2.2090 3.6668 2.2466 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000227700353.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:50:57 Heat of formation + Delta-G solvation = -91.036336 kcal Electronic energy + Delta-G solvation = -16339.382072 eV Core-core repulsion = 13793.865233 eV Total energy + Delta-G solvation = -2545.516838 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.96044 -38.33566 -36.24509 -34.36169 -32.71889 -30.36626 -29.32315 -28.04899 -24.90679 -23.64394 -21.93381 -21.32518 -20.83005 -18.83905 -17.95611 -17.00684 -16.82212 -16.21153 -15.63811 -15.60676 -14.84371 -14.66341 -14.42262 -14.07737 -13.75584 -13.42896 -13.24237 -12.87286 -12.68562 -12.52035 -12.47213 -12.36186 -11.88043 -11.77306 -11.69245 -11.44528 -11.27962 -11.21329 -11.11210 -10.79158 -10.52400 -8.86446 -8.25558 -6.22466 1.33703 1.37091 1.44983 2.36843 3.07809 3.20076 3.67438 3.70808 3.79359 4.09978 4.27093 4.33067 4.37301 4.47763 4.50652 4.57196 4.63748 4.68777 4.80471 4.89000 4.91711 4.95758 5.05812 5.12849 5.17071 5.21276 5.27777 5.32249 5.46290 5.54293 5.56797 5.75824 6.09877 6.76274 6.83274 6.88212 6.94751 7.41091 8.92013 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.038679 B = 0.006131 C = 0.005786 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 723.739927 B = 4565.704613 C = 4838.243520 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.153 4.153 3 C 0.198 3.802 4 H 0.018 0.982 5 C -0.503 4.503 6 H 0.031 0.969 7 C 0.013 3.987 8 N -0.949 5.949 9 Si 0.924 3.076 10 H -0.279 1.279 11 H -0.290 1.290 12 H -0.223 1.223 13 N -0.681 5.681 14 C 0.064 3.936 15 C -0.080 4.080 16 H 0.086 0.914 17 C -0.107 4.107 18 C -0.153 4.153 19 C 0.102 3.898 20 H 0.079 0.921 21 O -0.584 6.584 22 C -0.110 4.110 23 H 0.046 0.954 24 H 0.062 0.938 25 H 0.064 0.936 26 H 0.047 0.953 27 H 0.054 0.946 28 H 0.263 0.737 29 H 0.334 0.666 30 H 0.039 0.961 31 H 0.047 0.953 32 H 0.045 0.955 33 H 0.061 0.939 34 H 0.080 0.920 35 H 0.065 0.935 36 H 0.394 0.606 37 H 0.062 0.938 38 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.699 5.930 8.847 19.807 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.192 4.192 3 C 0.088 3.912 4 H 0.036 0.964 5 C -0.542 4.542 6 H 0.050 0.950 7 C -0.184 4.184 8 N -0.590 5.590 9 Si 0.748 3.252 10 H -0.206 1.206 11 H -0.216 1.216 12 H -0.146 1.146 13 N -0.311 5.311 14 C -0.065 4.065 15 C -0.099 4.099 16 H 0.104 0.896 17 C -0.144 4.144 18 C -0.190 4.190 19 C 0.043 3.957 20 H 0.097 0.903 21 O -0.392 6.392 22 C -0.148 4.148 23 H 0.065 0.935 24 H 0.081 0.919 25 H 0.083 0.917 26 H 0.066 0.934 27 H 0.072 0.928 28 H 0.072 0.928 29 H 0.152 0.848 30 H 0.057 0.943 31 H 0.065 0.935 32 H 0.064 0.936 33 H 0.080 0.920 34 H 0.099 0.901 35 H 0.084 0.916 36 H 0.243 0.757 37 H 0.080 0.920 38 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -16.259 6.092 8.116 19.166 hybrid contribution 0.135 -0.507 -0.552 0.762 sum -16.124 5.585 7.564 18.665 Atomic orbital electron populations 1.21891 0.95043 1.01865 1.01553 1.22532 0.95837 0.99532 1.01287 1.19306 0.93129 0.89837 0.88927 0.96447 1.21316 0.91786 1.39714 1.01347 0.95049 1.25749 0.95722 0.94849 1.02102 1.70108 1.12451 1.46932 1.29477 0.86292 0.81460 0.78004 0.79441 1.20551 1.21582 1.14570 1.60431 1.33866 1.28947 1.07880 1.22153 0.90861 0.96596 0.96914 1.21883 0.94197 0.97561 0.96256 0.89596 1.21933 0.97373 0.95495 0.99643 1.22875 0.95669 0.98905 1.01597 1.22698 0.89350 0.85956 0.97667 0.90310 1.86474 1.71435 1.31441 1.49850 1.22475 0.97353 0.96887 0.98111 0.93497 0.91877 0.91688 0.93412 0.92751 0.92819 0.84766 0.94285 0.93462 0.93619 0.91999 0.90146 0.91645 0.75663 0.91964 0.90084 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.51 8.66 71.98 0.62 -3.89 16 2 C -0.15 -6.15 4.62 30.59 0.14 -6.01 16 3 C 0.20 9.05 1.79 44.17 0.08 9.13 16 4 H 0.02 0.83 6.42 -2.39 -0.02 0.81 16 5 C -0.50 -29.15 9.28 25.60 0.24 -28.91 16 6 H 0.03 2.06 8.06 -2.91 -0.02 2.04 16 7 C 0.01 0.74 5.36 84.66 0.45 1.19 16 8 N -0.95 -60.33 13.96 21.45 0.30 -60.03 16 9 Si 0.92 43.99 25.87 68.60 1.77 45.77 16 10 H -0.28 -13.22 7.11 99.48 0.71 -12.51 16 11 H -0.29 -13.71 7.11 99.48 0.71 -13.00 16 12 H -0.22 -9.45 5.35 99.48 0.53 -8.92 16 13 N -0.68 -26.58 5.90 -495.45 -2.92 -29.50 16 14 C 0.06 2.03 4.33 86.30 0.37 2.40 16 15 C -0.08 -2.01 3.00 -9.72 -0.03 -2.04 16 16 H 0.09 1.94 8.14 -2.39 -0.02 1.92 16 17 C -0.11 -2.81 6.18 31.32 0.19 -2.62 16 18 C -0.15 -3.09 6.55 31.32 0.21 -2.89 16 19 C 0.10 1.95 4.24 31.69 0.13 2.08 16 20 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 21 O -0.58 -11.35 13.38 -148.98 -1.99 -13.34 16 22 C -0.11 -2.45 6.04 31.91 0.19 -2.26 16 23 H 0.05 1.43 8.12 -2.38 -0.02 1.42 16 24 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 25 H 0.06 1.78 6.20 -2.38 -0.01 1.76 16 26 H 0.05 2.06 4.73 -2.39 -0.01 2.05 16 27 H 0.05 2.19 8.05 -2.38 -0.02 2.17 16 28 H 0.26 15.70 8.31 -92.70 -0.77 14.93 16 29 H 0.33 11.99 8.06 -89.69 -0.72 11.27 16 30 H 0.04 1.15 5.55 -2.38 -0.01 1.14 16 31 H 0.05 1.67 8.05 -2.39 -0.02 1.65 16 32 H 0.04 1.45 7.77 -2.39 -0.02 1.43 16 33 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 34 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 35 H 0.06 1.40 8.07 -2.38 -0.02 1.38 16 36 H 0.39 4.05 9.11 -74.06 -0.67 3.37 16 37 H 0.06 1.58 8.06 -2.39 -0.02 1.56 16 38 H 0.08 1.59 8.14 -2.38 -0.02 1.57 16 Total: -1.00 -68.27 292.10 -0.77 -69.04 By element: Atomic # 1 Polarization: 22.41 SS G_CDS: -0.53 Total: 21.88 kcal Atomic # 6 Polarization: -36.41 SS G_CDS: 2.60 Total: -33.81 kcal Atomic # 7 Polarization: -86.91 SS G_CDS: -2.62 Total: -89.53 kcal Atomic # 8 Polarization: -11.35 SS G_CDS: -1.99 Total: -13.34 kcal Atomic # 14 Polarization: 43.99 SS G_CDS: 1.77 Total: 45.77 kcal Total: -68.27 -0.77 -69.04 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000227700353.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.998 kcal (2) G-P(sol) polarization free energy of solvation -68.272 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.270 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.767 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.039 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.036 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds