Wall clock time and date at job start Sun Mar 29 2020 21:53:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53003 * 109.47313 * 2 1 4 4 H 1.09002 * 109.47044 * 305.49147 * 3 2 1 5 5 C 1.50697 * 109.47441 * 185.48900 * 3 2 1 6 6 H 1.07998 * 120.00191 * 244.53240 * 5 3 2 7 7 C 1.37873 * 119.99984 * 64.52392 * 5 3 2 8 8 N 1.31510 * 120.00536 * 196.46017 * 7 5 3 9 9 Si 1.86804 * 120.00011 * 16.46550 * 7 5 3 10 10 H 1.48504 * 109.47123 * 91.17418 * 9 7 5 11 11 H 1.48497 * 109.47255 * 211.17424 * 9 7 5 12 12 H 1.48507 * 109.47029 * 331.17628 * 9 7 5 13 13 N 1.46910 * 109.46936 * 65.48651 * 3 2 1 14 14 C 1.46898 * 110.99846 * 203.51820 * 13 3 2 15 15 H 1.08992 * 109.47360 * 325.84944 * 14 13 3 16 16 C 1.52999 * 109.46959 * 85.85043 * 14 13 3 17 17 C 1.53003 * 109.46611 * 205.84869 * 14 13 3 18 18 H 1.08998 * 110.80687 * 303.62862 * 17 14 13 19 19 C 1.54816 * 110.90269 * 180.02562 * 17 14 13 20 20 C 1.54105 * 104.18501 * 220.91950 * 19 17 14 21 21 O 1.43738 * 107.29411 * 357.97256 * 20 19 17 22 22 C 1.44385 * 106.97541 * 26.51339 * 21 20 19 23 23 H 1.09001 * 109.47278 * 294.92470 * 1 2 3 24 24 H 1.08994 * 109.47463 * 174.92265 * 1 2 3 25 25 H 1.09003 * 109.47166 * 54.91985 * 1 2 3 26 26 H 1.08995 * 109.47245 * 120.00375 * 2 1 3 27 27 H 1.09002 * 109.46819 * 240.00174 * 2 1 3 28 28 H 0.96997 * 120.00554 * 180.02562 * 8 7 5 29 29 H 1.00906 * 110.99200 * 79.56529 * 13 3 2 30 30 H 1.08998 * 109.47136 * 185.33748 * 16 14 13 31 31 H 1.09000 * 109.47138 * 305.34129 * 16 14 13 32 32 H 1.09001 * 109.46843 * 65.34188 * 16 14 13 33 33 H 1.09001 * 110.49008 * 339.60086 * 19 17 14 34 34 H 1.09002 * 110.48435 * 102.24636 * 19 17 14 35 35 H 1.09001 * 109.87565 * 117.39782 * 20 19 17 36 36 H 1.09000 * 109.87779 * 238.54996 * 20 19 17 37 37 H 1.09007 * 110.61443 * 201.43751 * 22 21 20 38 38 H 1.08998 * 110.61681 * 78.44122 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5986 1.9840 -0.8367 5 6 3.5408 1.4447 -0.1359 6 1 4.1554 1.8205 0.6687 7 6 4.1295 0.9668 -1.2874 8 7 5.4091 0.6636 -1.2949 9 14 3.1093 0.7499 -2.8372 10 1 3.1703 1.9926 -3.6479 11 1 3.6476 -0.3849 -3.6295 12 1 1.6989 0.4696 -2.4662 13 7 1.6614 2.0957 1.2602 14 6 1.6155 3.5556 1.1034 15 1 2.3848 3.8696 0.3980 16 6 0.2402 3.9688 0.5755 17 6 1.8631 4.2220 2.4582 18 1 1.1431 3.8734 3.1986 19 6 1.8212 5.7644 2.3310 20 6 2.9799 6.2486 3.2243 21 8 3.5699 5.0847 3.8271 22 6 3.3159 3.9752 2.9387 23 1 -0.3634 0.4331 0.9320 24 1 -0.3634 -1.0236 -0.0909 25 1 -0.3634 0.5906 -0.8410 26 1 1.8933 -0.5139 0.8899 27 1 1.8932 -0.5138 -0.8900 28 1 5.8233 0.3277 -2.1051 29 1 2.2872 1.8316 2.0065 30 1 0.2367 5.0391 0.3694 31 1 0.0236 3.4213 -0.3418 32 1 -0.5195 3.7403 1.3230 33 1 1.9849 6.0665 1.2966 34 1 0.8701 6.1516 2.6966 35 1 3.7220 6.7690 2.6189 36 1 2.5978 6.9137 3.9987 37 1 3.3870 3.0294 3.4759 38 1 4.0071 3.9922 2.0961 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000229635795.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:53:20 Heat of formation + Delta-G solvation = -61.968646 kcal Electronic energy + Delta-G solvation = -16858.971362 eV Core-core repulsion = 14314.714993 eV Total energy + Delta-G solvation = -2544.256369 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.39500 -36.75470 -33.97101 -31.98541 -30.84540 -28.86295 -28.50673 -26.39372 -22.86455 -22.46724 -21.74241 -19.64913 -19.49246 -17.12990 -16.32415 -15.70911 -15.02940 -14.90274 -14.33660 -13.66286 -13.36018 -13.10921 -12.75253 -12.44665 -12.40074 -12.08118 -11.89544 -11.51396 -11.40278 -11.10748 -10.97817 -10.77678 -10.66377 -10.45206 -10.22141 -9.97776 -9.74544 -9.56336 -9.44537 -9.22555 -8.47189 -7.35271 -6.17328 -4.12871 3.24513 3.34710 3.38443 4.15996 4.37683 4.71343 4.91503 5.06055 5.15292 5.21412 5.38166 5.54957 5.70048 5.82850 5.87685 5.98940 6.01119 6.08264 6.12319 6.13502 6.14728 6.26368 6.34323 6.43164 6.56075 6.73071 6.75863 6.81188 7.05790 7.07590 7.21451 7.35953 7.59626 8.05195 8.37555 8.48708 8.89396 9.50428 10.95492 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.026835 B = 0.008749 C = 0.007632 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1043.173514 B = 3199.471048 C = 3667.709789 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.109 4.109 3 C 0.188 3.812 4 H 0.028 0.972 5 C -0.553 4.553 6 H 0.071 0.929 7 C 0.080 3.920 8 N -0.889 5.889 9 Si 0.862 3.138 10 H -0.282 1.282 11 H -0.288 1.288 12 H -0.250 1.250 13 N -0.678 5.678 14 C 0.096 3.904 15 H 0.053 0.947 16 C -0.135 4.135 17 C -0.118 4.118 18 H 0.086 0.914 19 C -0.148 4.148 20 C 0.047 3.953 21 O -0.384 6.384 22 C 0.049 3.951 23 H 0.057 0.943 24 H 0.030 0.970 25 H 0.037 0.963 26 H 0.052 0.948 27 H 0.050 0.950 28 H 0.263 0.737 29 H 0.333 0.667 30 H 0.045 0.955 31 H 0.053 0.947 32 H 0.052 0.948 33 H 0.076 0.924 34 H 0.073 0.927 35 H 0.054 0.946 36 H 0.077 0.923 37 H 0.093 0.907 38 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.581 7.285 4.924 12.286 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.147 4.147 3 C 0.079 3.921 4 H 0.046 0.954 5 C -0.591 4.591 6 H 0.089 0.911 7 C -0.124 4.124 8 N -0.526 5.526 9 Si 0.688 3.312 10 H -0.208 1.208 11 H -0.214 1.214 12 H -0.174 1.174 13 N -0.308 5.308 14 C -0.014 4.014 15 H 0.071 0.929 16 C -0.193 4.193 17 C -0.137 4.137 18 H 0.104 0.896 19 C -0.187 4.187 20 C -0.030 4.030 21 O -0.303 6.303 22 C -0.028 4.028 23 H 0.076 0.924 24 H 0.049 0.951 25 H 0.056 0.944 26 H 0.070 0.930 27 H 0.068 0.932 28 H 0.073 0.927 29 H 0.150 0.850 30 H 0.064 0.936 31 H 0.072 0.928 32 H 0.071 0.929 33 H 0.095 0.905 34 H 0.092 0.908 35 H 0.072 0.928 36 H 0.095 0.905 37 H 0.111 0.889 38 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -8.992 7.119 4.905 12.474 hybrid contribution 0.571 0.058 -1.300 1.420 sum -8.422 7.177 3.605 11.638 Atomic orbital electron populations 1.21722 0.98002 0.98893 1.01184 1.21791 0.93288 0.99071 1.00586 1.19521 0.94021 0.90733 0.87860 0.95388 1.21688 0.90634 1.43392 1.03401 0.91126 1.24941 0.94673 0.93863 0.98932 1.70006 1.11796 1.42513 1.28240 0.87208 0.82367 0.77818 0.83758 1.20796 1.21417 1.17376 1.60862 1.56230 1.04886 1.08818 1.21327 0.96805 0.89537 0.93763 0.92862 1.21789 0.97168 0.99246 1.01101 1.22889 0.97560 0.94414 0.98818 0.89578 1.22968 0.98967 0.95944 1.00790 1.23117 0.94393 0.89167 0.96314 1.88826 1.78142 1.17811 1.45548 1.23715 0.95127 0.90082 0.93836 0.92362 0.95109 0.94377 0.92959 0.93152 0.92712 0.84972 0.93575 0.92750 0.92876 0.90509 0.90816 0.92752 0.90471 0.88894 0.91307 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.56 9.75 37.16 0.36 -2.20 16 2 C -0.11 -2.33 4.90 -26.73 -0.13 -2.46 16 3 C 0.19 4.21 1.33 -68.86 -0.09 4.11 16 4 H 0.03 0.66 5.80 -51.93 -0.30 0.36 16 5 C -0.55 -14.68 8.64 -34.44 -0.30 -14.98 16 6 H 0.07 2.03 7.98 -52.49 -0.42 1.61 16 7 C 0.08 2.22 5.31 -17.82 -0.09 2.12 16 8 N -0.89 -26.49 13.96 55.43 0.77 -25.72 16 9 Si 0.86 20.84 25.80 -169.99 -4.39 16.46 16 10 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 11 H -0.29 -7.02 7.11 56.52 0.40 -6.61 16 12 H -0.25 -5.71 5.56 56.52 0.31 -5.39 16 13 N -0.68 -12.95 5.62 -100.95 -0.57 -13.52 16 14 C 0.10 1.64 1.88 -67.71 -0.13 1.51 16 15 H 0.05 1.05 7.52 -51.93 -0.39 0.66 16 16 C -0.14 -2.04 9.10 37.16 0.34 -1.71 16 17 C -0.12 -1.73 2.76 -88.61 -0.24 -1.98 16 18 H 0.09 1.24 8.14 -51.93 -0.42 0.82 16 19 C -0.15 -1.86 5.70 -25.20 -0.14 -2.00 16 20 C 0.05 0.61 7.70 37.73 0.29 0.90 16 21 O -0.38 -6.24 11.52 -35.23 -0.41 -6.65 16 22 C 0.05 0.79 6.46 38.21 0.25 1.04 16 23 H 0.06 1.02 7.91 -51.93 -0.41 0.61 16 24 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 25 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 26 H 0.05 1.12 8.14 -51.93 -0.42 0.70 16 27 H 0.05 1.14 5.05 -51.93 -0.26 0.88 16 28 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 29 H 0.33 6.44 7.00 -39.29 -0.27 6.16 16 30 H 0.05 0.60 7.24 -51.93 -0.38 0.23 16 31 H 0.05 0.89 7.42 -51.93 -0.39 0.51 16 32 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 33 H 0.08 0.96 7.49 -51.93 -0.39 0.57 16 34 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 35 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 37 H 0.09 1.47 7.74 -51.93 -0.40 1.07 16 38 H 0.07 1.25 8.01 -51.93 -0.42 0.83 16 LS Contribution 292.76 15.07 4.41 4.41 Total: -1.00 -28.59 292.76 -6.70 -35.29 By element: Atomic # 1 Polarization: 12.00 SS G_CDS: -6.63 Total: 5.37 kcal Atomic # 6 Polarization: -15.75 SS G_CDS: 0.11 Total: -15.65 kcal Atomic # 7 Polarization: -39.44 SS G_CDS: 0.21 Total: -39.23 kcal Atomic # 8 Polarization: -6.24 SS G_CDS: -0.41 Total: -6.65 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -4.39 Total: 16.46 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -28.59 -6.70 -35.29 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000229635795.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.681 kcal (2) G-P(sol) polarization free energy of solvation -28.592 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.272 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.696 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.288 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.969 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds