Wall clock time and date at job start Sun Mar 29 2020 21:53:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53003 * 109.47313 * 2 1 4 4 H 1.09002 * 109.47044 * 305.49147 * 3 2 1 5 5 C 1.50697 * 109.47441 * 185.48900 * 3 2 1 6 6 H 1.07998 * 120.00191 * 244.53240 * 5 3 2 7 7 C 1.37873 * 119.99984 * 64.52392 * 5 3 2 8 8 N 1.31510 * 120.00536 * 196.46017 * 7 5 3 9 9 Si 1.86804 * 120.00011 * 16.46550 * 7 5 3 10 10 H 1.48504 * 109.47123 * 91.17418 * 9 7 5 11 11 H 1.48497 * 109.47255 * 211.17424 * 9 7 5 12 12 H 1.48507 * 109.47029 * 331.17628 * 9 7 5 13 13 N 1.46910 * 109.46936 * 65.48651 * 3 2 1 14 14 C 1.46898 * 110.99846 * 203.51820 * 13 3 2 15 15 H 1.08992 * 109.47360 * 325.84944 * 14 13 3 16 16 C 1.52999 * 109.46959 * 85.85043 * 14 13 3 17 17 C 1.53003 * 109.46611 * 205.84869 * 14 13 3 18 18 H 1.08998 * 110.80687 * 303.62862 * 17 14 13 19 19 C 1.54816 * 110.90269 * 180.02562 * 17 14 13 20 20 C 1.54105 * 104.18501 * 220.91950 * 19 17 14 21 21 O 1.43738 * 107.29411 * 357.97256 * 20 19 17 22 22 C 1.44385 * 106.97541 * 26.51339 * 21 20 19 23 23 H 1.09001 * 109.47278 * 294.92470 * 1 2 3 24 24 H 1.08994 * 109.47463 * 174.92265 * 1 2 3 25 25 H 1.09003 * 109.47166 * 54.91985 * 1 2 3 26 26 H 1.08995 * 109.47245 * 120.00375 * 2 1 3 27 27 H 1.09002 * 109.46819 * 240.00174 * 2 1 3 28 28 H 0.96997 * 120.00554 * 180.02562 * 8 7 5 29 29 H 1.00906 * 110.99200 * 79.56529 * 13 3 2 30 30 H 1.08998 * 109.47136 * 185.33748 * 16 14 13 31 31 H 1.09000 * 109.47138 * 305.34129 * 16 14 13 32 32 H 1.09001 * 109.46843 * 65.34188 * 16 14 13 33 33 H 1.09001 * 110.49008 * 339.60086 * 19 17 14 34 34 H 1.09002 * 110.48435 * 102.24636 * 19 17 14 35 35 H 1.09001 * 109.87565 * 117.39782 * 20 19 17 36 36 H 1.09000 * 109.87779 * 238.54996 * 20 19 17 37 37 H 1.09007 * 110.61443 * 201.43751 * 22 21 20 38 38 H 1.08998 * 110.61681 * 78.44122 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5986 1.9840 -0.8367 5 6 3.5408 1.4447 -0.1359 6 1 4.1554 1.8205 0.6687 7 6 4.1295 0.9668 -1.2874 8 7 5.4091 0.6636 -1.2949 9 14 3.1093 0.7499 -2.8372 10 1 3.1703 1.9926 -3.6479 11 1 3.6476 -0.3849 -3.6295 12 1 1.6989 0.4696 -2.4662 13 7 1.6614 2.0957 1.2602 14 6 1.6155 3.5556 1.1034 15 1 2.3848 3.8696 0.3980 16 6 0.2402 3.9688 0.5755 17 6 1.8631 4.2220 2.4582 18 1 1.1431 3.8734 3.1986 19 6 1.8212 5.7644 2.3310 20 6 2.9799 6.2486 3.2243 21 8 3.5699 5.0847 3.8271 22 6 3.3159 3.9752 2.9387 23 1 -0.3634 0.4331 0.9320 24 1 -0.3634 -1.0236 -0.0909 25 1 -0.3634 0.5906 -0.8410 26 1 1.8933 -0.5139 0.8899 27 1 1.8932 -0.5138 -0.8900 28 1 5.8233 0.3277 -2.1051 29 1 2.2872 1.8316 2.0065 30 1 0.2367 5.0391 0.3694 31 1 0.0236 3.4213 -0.3418 32 1 -0.5195 3.7403 1.3230 33 1 1.9849 6.0665 1.2966 34 1 0.8701 6.1516 2.6966 35 1 3.7220 6.7690 2.6189 36 1 2.5978 6.9137 3.9987 37 1 3.3870 3.0294 3.4759 38 1 4.0071 3.9922 2.0961 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000229635795.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:53:20 Heat of formation + Delta-G solvation = -81.766839 kcal Electronic energy + Delta-G solvation = -16859.829876 eV Core-core repulsion = 14314.714993 eV Total energy + Delta-G solvation = -2545.114883 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.63747 -38.32976 -35.53983 -33.99247 -32.16176 -30.24240 -29.75657 -28.20798 -24.54498 -23.77456 -22.99550 -21.35289 -20.82807 -19.12648 -17.58343 -17.08766 -16.75905 -16.25980 -15.82919 -15.24906 -14.90209 -14.61777 -14.34782 -13.92564 -13.69752 -13.60047 -13.38690 -13.11259 -12.90486 -12.55918 -12.37151 -12.19208 -12.16708 -11.93560 -11.63700 -11.43713 -11.39985 -11.35584 -11.02444 -10.66381 -10.58890 -9.02893 -8.33690 -6.32265 1.31187 1.35865 1.45867 2.33290 2.96870 3.02380 3.44955 3.68022 3.88978 3.99787 4.22106 4.36410 4.42210 4.52422 4.57553 4.61609 4.71339 4.77449 4.80206 4.86626 4.90303 4.96777 5.02320 5.10420 5.17742 5.25134 5.31859 5.35738 5.53184 5.54819 5.58843 5.74085 5.88867 6.14918 6.45175 6.69784 6.84620 7.34887 8.82587 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.026835 B = 0.008749 C = 0.007632 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1043.173514 B = 3199.471048 C = 3667.709789 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.111 4.111 3 C 0.195 3.805 4 H 0.026 0.974 5 C -0.548 4.548 6 H 0.033 0.967 7 C 0.022 3.978 8 N -0.940 5.940 9 Si 0.922 3.078 10 H -0.280 1.280 11 H -0.289 1.289 12 H -0.225 1.225 13 N -0.667 5.667 14 C 0.095 3.905 15 H 0.019 0.981 16 C -0.128 4.128 17 C -0.108 4.108 18 H 0.099 0.901 19 C -0.141 4.141 20 C 0.039 3.961 21 O -0.402 6.402 22 C 0.050 3.950 23 H 0.066 0.934 24 H 0.051 0.949 25 H 0.040 0.960 26 H 0.045 0.955 27 H 0.036 0.964 28 H 0.263 0.737 29 H 0.329 0.671 30 H 0.068 0.932 31 H 0.040 0.960 32 H 0.068 0.932 33 H 0.076 0.924 34 H 0.103 0.897 35 H 0.055 0.945 36 H 0.105 0.895 37 H 0.089 0.911 38 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.551 8.150 5.034 15.006 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.149 4.149 3 C 0.085 3.915 4 H 0.043 0.957 5 C -0.587 4.587 6 H 0.051 0.949 7 C -0.177 4.177 8 N -0.579 5.579 9 Si 0.746 3.254 10 H -0.206 1.206 11 H -0.215 1.215 12 H -0.147 1.147 13 N -0.296 5.296 14 C -0.015 4.015 15 H 0.037 0.963 16 C -0.186 4.186 17 C -0.127 4.127 18 H 0.117 0.883 19 C -0.179 4.179 20 C -0.038 4.038 21 O -0.321 6.321 22 C -0.027 4.027 23 H 0.085 0.915 24 H 0.070 0.930 25 H 0.059 0.941 26 H 0.064 0.936 27 H 0.054 0.946 28 H 0.072 0.928 29 H 0.146 0.854 30 H 0.087 0.913 31 H 0.059 0.941 32 H 0.087 0.913 33 H 0.095 0.905 34 H 0.121 0.879 35 H 0.073 0.927 36 H 0.123 0.877 37 H 0.107 0.893 38 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -11.992 8.001 5.028 15.267 hybrid contribution 1.579 -0.149 -1.229 2.006 sum -10.413 7.852 3.798 13.583 Atomic orbital electron populations 1.21614 0.94898 1.00465 1.01798 1.21731 0.96009 0.97583 0.99622 1.19380 0.90865 0.91988 0.89257 0.95661 1.22022 0.92941 1.41702 1.02031 0.94903 1.25770 0.95658 0.93983 1.02248 1.70143 1.13894 1.44749 1.29121 0.86234 0.82021 0.77594 0.79530 1.20592 1.21533 1.14747 1.60918 1.55268 1.06289 1.07131 1.21404 0.97358 0.88223 0.94555 0.96278 1.21737 0.95637 1.00540 1.00701 1.22796 0.96320 0.96153 0.97458 0.88301 1.22970 1.00200 0.93791 1.00941 1.23379 0.94618 0.88407 0.97362 1.88807 1.78852 1.18670 1.45780 1.23573 0.95812 0.90426 0.92872 0.91491 0.93030 0.94055 0.93626 0.94588 0.92769 0.85419 0.91266 0.94077 0.91342 0.90524 0.87857 0.92674 0.87702 0.89258 0.94512 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.34 9.75 71.98 0.70 -3.63 16 2 C -0.11 -4.60 4.90 30.59 0.15 -4.45 16 3 C 0.20 8.66 1.33 44.17 0.06 8.71 16 4 H 0.03 1.16 5.80 -2.39 -0.01 1.14 16 5 C -0.55 -30.03 8.64 25.60 0.22 -29.81 16 6 H 0.03 2.00 7.98 -2.91 -0.02 1.97 16 7 C 0.02 1.27 5.31 84.65 0.45 1.72 16 8 N -0.94 -58.10 13.96 21.45 0.30 -57.80 16 9 Si 0.92 43.20 25.80 68.60 1.77 44.97 16 10 H -0.28 -12.94 7.11 99.48 0.71 -12.24 16 11 H -0.29 -13.54 7.11 99.48 0.71 -12.84 16 12 H -0.22 -9.55 5.56 99.48 0.55 -8.99 16 13 N -0.67 -25.07 5.62 -473.30 -2.66 -27.73 16 14 C 0.09 3.14 1.88 44.92 0.08 3.22 16 15 H 0.02 0.77 7.52 -2.39 -0.02 0.75 16 16 C -0.13 -3.51 9.10 71.98 0.65 -2.85 16 17 C -0.11 -3.02 2.76 -9.49 -0.03 -3.05 16 18 H 0.10 2.57 8.14 -2.39 -0.02 2.55 16 19 C -0.14 -3.15 5.70 31.59 0.18 -2.97 16 20 C 0.04 0.93 7.70 72.36 0.56 1.48 16 21 O -0.40 -12.83 11.52 -148.98 -1.72 -14.55 16 22 C 0.05 1.65 6.46 72.66 0.47 2.12 16 23 H 0.07 2.11 7.91 -2.39 -0.02 2.09 16 24 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 25 H 0.04 1.34 8.14 -2.39 -0.02 1.32 16 26 H 0.04 1.92 8.14 -2.39 -0.02 1.90 16 27 H 0.04 1.58 5.05 -2.39 -0.01 1.56 16 28 H 0.26 15.36 8.31 -92.71 -0.77 14.59 16 29 H 0.33 12.86 7.00 -89.69 -0.63 12.23 16 30 H 0.07 1.57 7.24 -2.39 -0.02 1.55 16 31 H 0.04 1.23 7.42 -2.39 -0.02 1.21 16 32 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 33 H 0.08 1.73 7.49 -2.39 -0.02 1.71 16 34 H 0.10 1.75 8.14 -2.39 -0.02 1.73 16 35 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 36 H 0.10 1.95 8.14 -2.39 -0.02 1.93 16 37 H 0.09 2.94 7.74 -2.38 -0.02 2.92 16 38 H 0.04 1.43 8.01 -2.39 -0.02 1.41 16 Total: -1.00 -63.11 292.76 1.43 -61.68 By element: Atomic # 1 Polarization: 22.70 SS G_CDS: 0.24 Total: 22.94 kcal Atomic # 6 Polarization: -33.01 SS G_CDS: 3.50 Total: -29.51 kcal Atomic # 7 Polarization: -83.16 SS G_CDS: -2.36 Total: -85.52 kcal Atomic # 8 Polarization: -12.83 SS G_CDS: -1.72 Total: -14.55 kcal Atomic # 14 Polarization: 43.20 SS G_CDS: 1.77 Total: 44.97 kcal Total: -63.11 1.43 -61.68 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000229635795.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.091 kcal (2) G-P(sol) polarization free energy of solvation -63.107 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.198 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.431 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.676 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.767 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds