Wall clock time and date at job start Sun Mar 29 2020 21:48:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53006 * 109.47244 * 2 1 4 4 H 1.09006 * 109.46818 * 325.51279 * 3 2 1 5 5 C 1.50698 * 109.47373 * 205.50888 * 3 2 1 6 6 H 1.07991 * 119.99892 * 245.97876 * 5 3 2 7 7 C 1.37878 * 119.99848 * 65.97385 * 5 3 2 8 8 N 1.31510 * 119.99594 * 185.85466 * 7 5 3 9 9 Si 1.86804 * 120.00223 * 5.85309 * 7 5 3 10 10 H 1.48491 * 109.47133 * 95.11830 * 9 7 5 11 11 H 1.48493 * 109.46955 * 215.12320 * 9 7 5 12 12 H 1.48503 * 109.46901 * 335.11964 * 9 7 5 13 13 N 1.46902 * 109.46837 * 85.50368 * 3 2 1 14 14 C 1.46845 * 110.99584 * 59.56314 * 13 3 2 15 15 C 1.53038 * 109.52322 * 174.15735 * 14 13 3 16 16 C 1.53117 * 109.27927 * 59.17775 * 15 14 13 17 17 H 1.09000 * 109.52942 * 62.24881 * 16 15 14 18 18 C 1.53000 * 109.52615 * 182.44374 * 16 15 14 19 19 C 1.53124 * 109.15813 * 302.34419 * 16 15 14 20 20 H 1.08998 * 109.50072 * 177.63346 * 19 16 15 21 21 O 1.42892 * 109.50739 * 297.71453 * 19 16 15 22 22 C 1.46842 * 111.00309 * 295.34984 * 13 3 2 23 23 H 1.09008 * 109.46967 * 51.03115 * 1 2 3 24 24 H 1.08998 * 109.46980 * 171.03181 * 1 2 3 25 25 H 1.08995 * 109.47405 * 291.04051 * 1 2 3 26 26 H 1.09002 * 109.47288 * 240.00497 * 2 1 3 27 27 H 1.08992 * 109.46934 * 119.99945 * 2 1 3 28 28 H 0.97006 * 119.99513 * 180.02562 * 8 7 5 29 29 H 1.09004 * 109.46506 * 294.16710 * 14 13 3 30 30 H 1.08996 * 109.46684 * 54.13807 * 14 13 3 31 31 H 1.08997 * 109.50803 * 179.11635 * 15 14 13 32 32 H 1.08998 * 109.50058 * 299.19741 * 15 14 13 33 33 H 1.09003 * 109.47334 * 59.99693 * 18 16 15 34 34 H 1.08995 * 109.47527 * 179.97438 * 18 16 15 35 35 H 1.09007 * 109.46942 * 299.99994 * 18 16 15 36 36 H 0.96698 * 114.00709 * 179.97438 * 21 19 16 37 37 H 1.08995 * 109.46102 * 305.85243 * 22 13 3 38 38 H 1.08993 * 109.46467 * 65.82488 * 22 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.3625 2.0675 -0.5819 5 6 3.4165 1.4888 -0.6119 6 1 4.2681 1.7593 -0.0055 7 6 3.5884 1.1855 -1.9458 8 7 4.7997 1.1132 -2.4528 9 14 2.1008 0.8775 -3.0330 10 1 1.7313 2.1335 -3.7337 11 1 2.4274 -0.1699 -4.0336 12 1 0.9612 0.4241 -2.1957 13 7 2.1009 1.9403 1.3808 14 6 2.9983 1.1145 2.1987 15 6 3.1508 1.7441 3.5852 16 6 1.7744 1.8460 4.2484 17 1 1.3595 0.8469 4.3821 18 6 1.9121 2.5302 5.6099 19 6 0.8451 2.6703 3.3531 20 1 -0.1484 2.7111 3.7997 21 8 1.3629 3.9954 3.2196 22 6 0.7594 2.0138 1.9733 23 1 -0.3633 0.6463 -0.7991 24 1 -0.3633 -1.0151 -0.1602 25 1 -0.3634 0.3689 0.9591 26 1 1.8934 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8899 28 1 4.9206 0.9002 -3.3915 29 1 2.5798 0.1130 2.2988 30 1 3.9747 1.0536 1.7181 31 1 3.8044 1.1227 4.1973 32 1 3.5827 2.7400 3.4871 33 1 2.3243 3.5301 5.4740 34 1 0.9319 2.6027 6.0810 35 1 2.5783 1.9457 6.2445 36 1 0.8235 4.5745 2.6639 37 1 0.1097 2.6061 1.3291 38 1 0.3514 1.0082 2.0744 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000230249170.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:48:36 Heat of formation + Delta-G solvation = -43.293803 kcal Electronic energy + Delta-G solvation = -17315.930712 eV Core-core repulsion = 14772.484145 eV Total energy + Delta-G solvation = -2543.446567 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.35665 -36.38119 -34.16182 -32.33238 -31.35653 -29.59314 -28.25939 -25.97275 -22.85669 -22.58366 -21.67112 -19.86015 -19.05123 -16.63496 -16.42933 -15.81300 -14.86143 -14.26562 -14.09142 -13.76733 -13.33254 -13.27998 -12.88610 -12.68820 -12.26782 -12.06852 -11.69738 -11.46447 -11.32080 -11.11201 -10.84968 -10.75698 -10.51739 -10.31802 -10.12644 -9.82087 -9.76998 -9.47959 -9.23887 -8.87943 -8.47637 -7.14111 -6.03038 -4.00270 3.29879 3.39964 3.42413 4.45477 4.53905 4.89461 5.05113 5.13578 5.25222 5.28003 5.53530 5.67909 5.80229 5.82394 5.86465 5.95792 5.99590 6.02173 6.08511 6.17063 6.22374 6.33977 6.38421 6.49422 6.58056 6.67587 6.79921 6.82773 6.92502 7.02464 7.33586 7.66892 7.99907 8.07692 8.23136 8.71377 9.05689 9.60034 11.09537 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.037461 B = 0.008791 C = 0.008117 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 747.269834 B = 3184.269489 C = 3448.904999 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.160 4.160 3 C 0.190 3.810 4 H 0.035 0.965 5 C -0.502 4.502 6 H 0.080 0.920 7 C 0.071 3.929 8 N -0.900 5.900 9 Si 0.854 3.146 10 H -0.283 1.283 11 H -0.290 1.290 12 H -0.239 1.239 13 N -0.507 5.507 14 C 0.060 3.940 15 C -0.108 4.108 16 C -0.085 4.085 17 H 0.070 0.930 18 C -0.140 4.140 19 C 0.115 3.885 20 H 0.044 0.956 21 O -0.549 6.549 22 C 0.012 3.988 23 H 0.050 0.950 24 H 0.036 0.964 25 H 0.055 0.945 26 H 0.062 0.938 27 H 0.053 0.947 28 H 0.262 0.738 29 H 0.022 0.978 30 H 0.090 0.910 31 H 0.054 0.946 32 H 0.076 0.924 33 H 0.063 0.937 34 H 0.045 0.955 35 H 0.048 0.952 36 H 0.371 0.629 37 H 0.066 0.934 38 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.444 0.385 11.139 14.608 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.199 4.199 3 C 0.083 3.917 4 H 0.052 0.948 5 C -0.540 4.540 6 H 0.098 0.902 7 C -0.131 4.131 8 N -0.539 5.539 9 Si 0.681 3.319 10 H -0.210 1.210 11 H -0.217 1.217 12 H -0.163 1.163 13 N -0.230 5.230 14 C -0.068 4.068 15 C -0.146 4.146 16 C -0.104 4.104 17 H 0.088 0.912 18 C -0.197 4.197 19 C 0.055 3.945 20 H 0.062 0.938 21 O -0.354 6.354 22 C -0.117 4.117 23 H 0.069 0.931 24 H 0.055 0.945 25 H 0.074 0.926 26 H 0.081 0.919 27 H 0.072 0.928 28 H 0.072 0.928 29 H 0.040 0.960 30 H 0.108 0.892 31 H 0.073 0.927 32 H 0.095 0.905 33 H 0.082 0.918 34 H 0.064 0.936 35 H 0.068 0.932 36 H 0.217 0.783 37 H 0.084 0.916 38 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -8.673 0.579 11.351 14.297 hybrid contribution -1.554 -0.909 -1.261 2.198 sum -10.226 -0.330 10.090 14.370 Atomic orbital electron populations 1.22326 0.98385 1.00218 1.01123 1.22711 0.93304 1.02305 1.01582 1.19741 0.97709 0.88816 0.85481 0.94768 1.20975 0.92202 1.45880 0.94993 0.90166 1.24900 0.95423 0.94886 0.97845 1.69911 1.20863 1.49286 1.13809 0.87396 0.85384 0.78130 0.80953 1.20972 1.21683 1.16250 1.62019 1.06547 1.51882 1.02593 1.22055 0.99163 0.93142 0.92472 1.21614 0.95248 1.02132 0.95587 1.21188 0.97023 0.97613 0.94554 0.91191 1.21721 1.00754 1.01402 0.95816 1.21821 0.94778 0.83502 0.94359 0.93820 1.86484 1.54476 1.21665 1.72753 1.23090 0.93464 0.99427 0.95724 0.93120 0.94466 0.92609 0.91917 0.92831 0.92808 0.96038 0.89211 0.92701 0.90541 0.91754 0.93585 0.93249 0.78285 0.91578 0.93850 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.90 8.79 37.16 0.33 -2.57 16 2 C -0.16 -3.36 4.14 -26.73 -0.11 -3.47 16 3 C 0.19 4.37 1.54 -68.86 -0.11 4.27 16 4 H 0.03 0.82 6.60 -51.93 -0.34 0.48 16 5 C -0.50 -13.89 8.46 -34.44 -0.29 -14.18 16 6 H 0.08 2.45 6.75 -52.49 -0.35 2.09 16 7 C 0.07 2.02 5.31 -17.82 -0.09 1.92 16 8 N -0.90 -27.49 13.96 55.43 0.77 -26.72 16 9 Si 0.85 20.75 25.66 -169.99 -4.36 16.39 16 10 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 11 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 12 H -0.24 -5.29 3.66 56.52 0.21 -5.08 16 13 N -0.51 -10.31 4.52 -228.08 -1.03 -11.35 16 14 C 0.06 1.16 4.78 -3.83 -0.02 1.14 16 15 C -0.11 -1.77 5.22 -26.65 -0.14 -1.91 16 16 C -0.09 -1.21 2.62 -90.50 -0.24 -1.45 16 17 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 18 C -0.14 -1.73 9.04 37.16 0.34 -1.39 16 19 C 0.11 1.65 3.27 -26.65 -0.09 1.57 16 20 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 21 O -0.55 -8.34 11.88 -35.23 -0.42 -8.76 16 22 C 0.01 0.19 3.83 -3.83 -0.01 0.18 16 23 H 0.05 0.92 6.82 -51.92 -0.35 0.56 16 24 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 25 H 0.06 0.89 4.74 -51.93 -0.25 0.64 16 26 H 0.06 1.43 5.11 -51.93 -0.27 1.17 16 27 H 0.05 1.10 5.59 -51.93 -0.29 0.81 16 28 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 29 H 0.02 0.41 6.15 -51.93 -0.32 0.09 16 30 H 0.09 2.00 6.21 -51.93 -0.32 1.67 16 31 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 32 H 0.08 1.39 7.80 -51.93 -0.41 0.99 16 33 H 0.06 0.87 7.62 -51.93 -0.40 0.47 16 34 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 35 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.37 4.44 9.08 45.56 0.41 4.85 16 37 H 0.07 1.06 8.08 -51.93 -0.42 0.64 16 38 H 0.04 0.71 5.11 -51.93 -0.27 0.44 16 LS Contribution 273.71 15.07 4.12 4.12 Total: -1.00 -30.32 273.71 -6.78 -37.10 By element: Atomic # 1 Polarization: 10.54 SS G_CDS: -5.43 Total: 5.11 kcal Atomic # 6 Polarization: -15.46 SS G_CDS: -0.44 Total: -15.90 kcal Atomic # 7 Polarization: -37.81 SS G_CDS: -0.26 Total: -38.06 kcal Atomic # 8 Polarization: -8.34 SS G_CDS: -0.42 Total: -8.76 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -4.36 Total: 16.39 kcal Total LS contribution 4.12 Total: 4.12 kcal Total: -30.32 -6.78 -37.10 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000230249170.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.194 kcal (2) G-P(sol) polarization free energy of solvation -30.317 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.511 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.783 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.100 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.294 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds