Wall clock time and date at job start Sun Mar 29 2020 21:48:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53006 * 109.47244 * 2 1 4 4 H 1.09006 * 109.46818 * 325.51279 * 3 2 1 5 5 C 1.50698 * 109.47373 * 205.50888 * 3 2 1 6 6 H 1.07991 * 119.99892 * 245.97876 * 5 3 2 7 7 C 1.37878 * 119.99848 * 65.97385 * 5 3 2 8 8 N 1.31510 * 119.99594 * 185.85466 * 7 5 3 9 9 Si 1.86804 * 120.00223 * 5.85309 * 7 5 3 10 10 H 1.48491 * 109.47133 * 95.11830 * 9 7 5 11 11 H 1.48493 * 109.46955 * 215.12320 * 9 7 5 12 12 H 1.48503 * 109.46901 * 335.11964 * 9 7 5 13 13 N 1.46902 * 109.46837 * 85.50368 * 3 2 1 14 14 C 1.46845 * 110.99584 * 59.56314 * 13 3 2 15 15 C 1.53038 * 109.52322 * 174.15735 * 14 13 3 16 16 C 1.53117 * 109.27927 * 59.17775 * 15 14 13 17 17 H 1.09000 * 109.52942 * 62.24881 * 16 15 14 18 18 C 1.53000 * 109.52615 * 182.44374 * 16 15 14 19 19 C 1.53124 * 109.15813 * 302.34419 * 16 15 14 20 20 H 1.08998 * 109.50072 * 177.63346 * 19 16 15 21 21 O 1.42892 * 109.50739 * 297.71453 * 19 16 15 22 22 C 1.46842 * 111.00309 * 295.34984 * 13 3 2 23 23 H 1.09008 * 109.46967 * 51.03115 * 1 2 3 24 24 H 1.08998 * 109.46980 * 171.03181 * 1 2 3 25 25 H 1.08995 * 109.47405 * 291.04051 * 1 2 3 26 26 H 1.09002 * 109.47288 * 240.00497 * 2 1 3 27 27 H 1.08992 * 109.46934 * 119.99945 * 2 1 3 28 28 H 0.97006 * 119.99513 * 180.02562 * 8 7 5 29 29 H 1.09004 * 109.46506 * 294.16710 * 14 13 3 30 30 H 1.08996 * 109.46684 * 54.13807 * 14 13 3 31 31 H 1.08997 * 109.50803 * 179.11635 * 15 14 13 32 32 H 1.08998 * 109.50058 * 299.19741 * 15 14 13 33 33 H 1.09003 * 109.47334 * 59.99693 * 18 16 15 34 34 H 1.08995 * 109.47527 * 179.97438 * 18 16 15 35 35 H 1.09007 * 109.46942 * 299.99994 * 18 16 15 36 36 H 0.96698 * 114.00709 * 179.97438 * 21 19 16 37 37 H 1.08995 * 109.46102 * 305.85243 * 22 13 3 38 38 H 1.08993 * 109.46467 * 65.82488 * 22 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.3625 2.0675 -0.5819 5 6 3.4165 1.4888 -0.6119 6 1 4.2681 1.7593 -0.0055 7 6 3.5884 1.1855 -1.9458 8 7 4.7997 1.1132 -2.4528 9 14 2.1008 0.8775 -3.0330 10 1 1.7313 2.1335 -3.7337 11 1 2.4274 -0.1699 -4.0336 12 1 0.9612 0.4241 -2.1957 13 7 2.1009 1.9403 1.3808 14 6 2.9983 1.1145 2.1987 15 6 3.1508 1.7441 3.5852 16 6 1.7744 1.8460 4.2484 17 1 1.3595 0.8469 4.3821 18 6 1.9121 2.5302 5.6099 19 6 0.8451 2.6703 3.3531 20 1 -0.1484 2.7111 3.7997 21 8 1.3629 3.9954 3.2196 22 6 0.7594 2.0138 1.9733 23 1 -0.3633 0.6463 -0.7991 24 1 -0.3633 -1.0151 -0.1602 25 1 -0.3634 0.3689 0.9591 26 1 1.8934 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8899 28 1 4.9206 0.9002 -3.3915 29 1 2.5798 0.1130 2.2988 30 1 3.9747 1.0536 1.7181 31 1 3.8044 1.1227 4.1973 32 1 3.5827 2.7400 3.4871 33 1 2.3243 3.5301 5.4740 34 1 0.9319 2.6027 6.0810 35 1 2.5783 1.9457 6.2445 36 1 0.8235 4.5745 2.6639 37 1 0.1097 2.6061 1.3291 38 1 0.3514 1.0082 2.0744 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000230249170.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:48:36 Heat of formation + Delta-G solvation = -67.059991 kcal Electronic energy + Delta-G solvation = -17316.961291 eV Core-core repulsion = 14772.484145 eV Total energy + Delta-G solvation = -2544.477146 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.74743 -37.81551 -35.45476 -34.34327 -32.84722 -30.97695 -29.84282 -27.50898 -24.50458 -24.03652 -23.03070 -21.43641 -20.40883 -18.66691 -17.66155 -17.45231 -16.18768 -16.07041 -15.49483 -15.24278 -14.76734 -14.64853 -14.45448 -14.23484 -13.68047 -13.45938 -13.15238 -12.93295 -12.68786 -12.57122 -12.46728 -12.39564 -12.21186 -11.70329 -11.48292 -11.36441 -11.26381 -11.10690 -10.92148 -10.65923 -10.37958 -8.70816 -8.24233 -6.26257 1.35769 1.39385 1.49945 2.38932 3.09240 3.26037 3.65623 3.91267 3.92229 4.10072 4.26746 4.32552 4.35793 4.47591 4.54658 4.61529 4.77372 4.80247 4.81685 4.92082 4.93709 5.00646 5.14052 5.17535 5.19480 5.22810 5.29994 5.36589 5.42138 5.60772 5.67633 5.69440 6.11931 6.52692 6.80299 6.82988 7.11351 7.38860 8.92049 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.037461 B = 0.008791 C = 0.008117 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 747.269834 B = 3184.269489 C = 3448.904999 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.157 4.157 3 C 0.195 3.805 4 H 0.033 0.967 5 C -0.503 4.503 6 H 0.031 0.969 7 C 0.008 3.992 8 N -0.954 5.954 9 Si 0.922 3.078 10 H -0.284 1.284 11 H -0.294 1.294 12 H -0.202 1.202 13 N -0.526 5.526 14 C 0.065 3.935 15 C -0.100 4.100 16 C -0.086 4.086 17 H 0.087 0.913 18 C -0.133 4.133 19 C 0.116 3.884 20 H 0.079 0.921 21 O -0.569 6.569 22 C 0.010 3.990 23 H 0.050 0.950 24 H 0.057 0.943 25 H 0.078 0.922 26 H 0.041 0.959 27 H 0.055 0.945 28 H 0.262 0.738 29 H 0.029 0.971 30 H 0.043 0.957 31 H 0.069 0.931 32 H 0.051 0.949 33 H 0.047 0.953 34 H 0.065 0.935 35 H 0.059 0.941 36 H 0.384 0.616 37 H 0.074 0.926 38 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.019 -0.123 12.593 18.113 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.196 4.196 3 C 0.087 3.913 4 H 0.051 0.949 5 C -0.542 4.542 6 H 0.049 0.951 7 C -0.188 4.188 8 N -0.596 5.596 9 Si 0.746 3.254 10 H -0.210 1.210 11 H -0.221 1.221 12 H -0.123 1.123 13 N -0.250 5.250 14 C -0.063 4.063 15 C -0.138 4.138 16 C -0.104 4.104 17 H 0.105 0.895 18 C -0.190 4.190 19 C 0.057 3.943 20 H 0.097 0.903 21 O -0.375 6.375 22 C -0.118 4.118 23 H 0.069 0.931 24 H 0.076 0.924 25 H 0.096 0.904 26 H 0.060 0.940 27 H 0.073 0.927 28 H 0.071 0.929 29 H 0.047 0.953 30 H 0.061 0.939 31 H 0.088 0.912 32 H 0.070 0.930 33 H 0.066 0.934 34 H 0.084 0.916 35 H 0.078 0.922 36 H 0.232 0.768 37 H 0.093 0.907 38 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -12.274 0.083 12.838 17.761 hybrid contribution -0.322 -0.703 -1.634 1.807 sum -12.596 -0.620 11.204 16.869 Atomic orbital electron populations 1.22257 0.94960 1.01739 1.02497 1.22547 0.96250 1.00103 1.00716 1.19529 0.94392 0.90381 0.86992 0.94948 1.21276 0.93524 1.44521 0.94832 0.95085 1.25823 0.98550 0.94884 0.99538 1.70088 1.23694 1.51568 1.14202 0.86330 0.82514 0.77723 0.78798 1.21034 1.22111 1.12348 1.61894 1.09297 1.52057 1.01716 1.21927 0.96857 0.93907 0.93624 1.21523 0.97574 1.00566 0.94175 1.21247 0.95077 0.98848 0.95245 0.89509 1.21647 1.02099 1.00350 0.94908 1.21925 0.96409 0.82871 0.93079 0.90332 1.86470 1.55562 1.22295 1.73174 1.23232 0.90979 1.00532 0.97007 0.93127 0.92439 0.90368 0.94039 0.92675 0.92918 0.95306 0.93851 0.91235 0.93035 0.93372 0.91554 0.92222 0.76812 0.90720 0.92660 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.89 8.79 71.98 0.63 -4.25 16 2 C -0.16 -6.29 4.14 30.60 0.13 -6.16 16 3 C 0.20 8.89 1.54 44.17 0.07 8.96 16 4 H 0.03 1.50 6.60 -2.38 -0.02 1.48 16 5 C -0.50 -29.02 8.46 25.60 0.22 -28.80 16 6 H 0.03 2.04 6.75 -2.92 -0.02 2.02 16 7 C 0.01 0.48 5.31 84.66 0.45 0.93 16 8 N -0.95 -61.10 13.96 21.45 0.30 -60.81 16 9 Si 0.92 43.28 25.66 68.60 1.76 45.04 16 10 H -0.28 -13.29 7.11 99.48 0.71 -12.58 16 11 H -0.29 -13.96 7.11 99.48 0.71 -13.25 16 12 H -0.20 -8.16 3.66 99.48 0.36 -7.80 16 13 N -0.53 -21.09 4.52 -875.51 -3.96 -25.05 16 14 C 0.06 2.55 4.78 86.33 0.41 2.96 16 15 C -0.10 -3.23 5.22 30.65 0.16 -3.07 16 16 C -0.09 -2.16 2.62 -10.71 -0.03 -2.19 16 17 H 0.09 1.94 8.14 -2.39 -0.02 1.92 16 18 C -0.13 -2.85 9.04 71.98 0.65 -2.20 16 19 C 0.12 2.93 3.27 30.65 0.10 3.03 16 20 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 21 O -0.57 -16.01 11.88 -148.98 -1.77 -17.78 16 22 C 0.01 0.31 3.83 86.33 0.33 0.64 16 23 H 0.05 1.58 6.82 -2.38 -0.02 1.56 16 24 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 25 H 0.08 2.08 4.74 -2.39 -0.01 2.07 16 26 H 0.04 1.82 5.11 -2.39 -0.01 1.81 16 27 H 0.05 2.17 5.59 -2.39 -0.01 2.16 16 28 H 0.26 15.78 8.31 -92.70 -0.77 15.01 16 29 H 0.03 1.07 6.15 -2.39 -0.01 1.06 16 30 H 0.04 2.07 6.21 -2.39 -0.01 2.05 16 31 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 32 H 0.05 1.90 7.80 -2.39 -0.02 1.88 16 33 H 0.05 1.19 7.62 -2.39 -0.02 1.17 16 34 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 35 H 0.06 1.15 8.14 -2.38 -0.02 1.13 16 36 H 0.38 8.29 9.08 -74.06 -0.67 7.62 16 37 H 0.07 2.10 8.08 -2.39 -0.02 2.08 16 38 H 0.06 1.54 5.11 -2.39 -0.01 1.52 16 Total: -1.00 -69.12 273.71 -0.52 -69.64 By element: Atomic # 1 Polarization: 19.07 SS G_CDS: 0.03 Total: 19.10 kcal Atomic # 6 Polarization: -33.27 SS G_CDS: 3.12 Total: -30.15 kcal Atomic # 7 Polarization: -82.19 SS G_CDS: -3.66 Total: -85.85 kcal Atomic # 8 Polarization: -16.01 SS G_CDS: -1.77 Total: -17.78 kcal Atomic # 14 Polarization: 43.28 SS G_CDS: 1.76 Total: 45.04 kcal Total: -69.12 -0.52 -69.64 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000230249170.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.578 kcal (2) G-P(sol) polarization free energy of solvation -69.121 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.543 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.517 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.638 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.060 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds