Wall clock time and date at job start Sun Mar 29 2020 21:47:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53001 * 109.46970 * 2 1 4 4 H 1.08997 * 109.47444 * 56.92059 * 3 2 1 5 5 C 1.50712 * 109.47024 * 176.91821 * 3 2 1 6 6 H 1.07995 * 119.99679 * 119.99446 * 5 3 2 7 7 C 1.37873 * 119.99634 * 299.99835 * 5 3 2 8 8 N 1.31510 * 120.00270 * 0.02562 * 7 5 3 9 9 Si 1.86803 * 119.99755 * 179.97438 * 7 5 3 10 10 H 1.48504 * 109.47045 * 0.02562 * 9 7 5 11 11 H 1.48500 * 109.46894 * 119.99984 * 9 7 5 12 12 H 1.48493 * 109.47482 * 240.00063 * 9 7 5 13 13 N 1.46903 * 109.47269 * 296.91356 * 3 2 1 14 14 C 1.46838 * 111.00148 * 171.00093 * 13 3 2 15 15 C 1.53043 * 109.52641 * 185.84458 * 14 13 3 16 16 C 1.53122 * 109.27303 * 300.81902 * 15 14 13 17 17 C 1.53118 * 109.16075 * 57.65434 * 16 15 14 18 18 H 1.09000 * 109.50652 * 62.28591 * 17 16 15 19 19 O 1.42906 * 109.50327 * 182.40382 * 17 16 15 20 20 C 1.42901 * 113.99697 * 269.99997 * 19 17 16 21 21 C 1.46849 * 111.00012 * 295.21059 * 13 3 2 22 22 H 1.08999 * 109.47416 * 305.06473 * 1 2 3 23 23 H 1.09002 * 109.47255 * 65.06126 * 1 2 3 24 24 H 1.08998 * 109.47606 * 185.06451 * 1 2 3 25 25 H 1.09004 * 109.47495 * 239.99813 * 2 1 3 26 26 H 1.09000 * 109.47460 * 119.99748 * 2 1 3 27 27 H 0.97001 * 120.00098 * 180.02562 * 8 7 5 28 28 H 1.08997 * 109.46638 * 65.82413 * 14 13 3 29 29 H 1.09007 * 109.46451 * 305.85886 * 14 13 3 30 30 H 1.08993 * 109.50438 * 180.87883 * 15 14 13 31 31 H 1.09003 * 109.49926 * 60.75619 * 15 14 13 32 32 H 1.08998 * 109.52134 * 177.55534 * 16 15 14 33 33 H 1.08994 * 109.52416 * 297.74726 * 16 15 14 34 34 H 1.08999 * 109.47199 * 59.99649 * 20 19 17 35 35 H 1.09002 * 109.46622 * 180.02562 * 20 19 17 36 36 H 1.08997 * 109.46919 * 299.99725 * 20 19 17 37 37 H 1.08999 * 109.46147 * 294.17498 * 21 13 3 38 38 H 1.09004 * 109.46215 * 54.14303 * 21 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6322 1.9721 0.8611 5 6 3.5451 1.4432 0.0764 6 1 4.1256 1.8964 -0.7135 7 6 4.1808 0.8652 1.1546 8 7 3.4738 0.3128 2.1162 9 14 6.0464 0.8654 1.2490 10 1 6.6026 1.5439 0.0508 11 1 6.4801 1.5874 2.4721 12 1 6.5398 -0.5343 1.2994 13 7 1.6121 2.1132 -1.2350 14 6 1.8966 3.5526 -1.1779 15 6 1.3089 4.2396 -2.4127 16 6 1.9264 3.6279 -3.6733 17 6 1.6573 2.1206 -3.6841 18 1 0.5826 1.9430 -3.7213 19 8 2.2786 1.5333 -4.8293 20 6 1.4427 1.4937 -5.9877 21 6 2.2350 1.4951 -2.4124 22 1 -0.3634 0.5904 0.8411 23 1 -0.3634 0.4333 -0.9318 24 1 -0.3634 -1.0236 0.0907 25 1 1.8933 -0.5139 -0.8900 26 1 1.8933 -0.5138 0.8900 27 1 3.9211 -0.0936 2.8749 28 1 2.9750 3.7090 -1.1540 29 1 1.4485 3.9761 -0.2789 30 1 1.5338 5.3055 -2.3778 31 1 0.2286 4.0953 -2.4298 32 1 1.4789 4.0841 -4.5563 33 1 3.0017 3.8060 -3.6755 34 1 1.1548 2.5083 -6.2628 35 1 1.9867 1.0335 -6.8126 36 1 0.5491 0.9085 -5.7710 37 1 3.3119 1.6611 -2.3828 38 1 2.0326 0.4240 -2.4102 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000230249592.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:47:49 Heat of formation + Delta-G solvation = -55.043747 kcal Electronic energy + Delta-G solvation = -17070.207785 eV Core-core repulsion = 14526.251703 eV Total energy + Delta-G solvation = -2543.956083 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -38.94878 -36.85847 -34.22303 -31.82954 -30.42668 -29.63252 -26.52061 -26.23034 -23.80908 -22.54701 -21.81475 -19.63001 -18.92866 -16.42285 -16.16456 -15.56864 -14.85873 -14.59030 -14.22069 -13.83924 -13.19162 -12.99984 -12.85687 -12.60739 -12.46677 -11.74826 -11.53123 -11.28141 -11.16597 -10.93319 -10.71918 -10.54181 -10.49263 -10.30990 -10.02628 -9.89033 -9.61687 -9.51275 -9.08109 -8.96245 -8.35069 -7.11486 -5.97177 -4.10029 3.27615 3.36296 3.40548 3.98991 4.41973 5.11137 5.22968 5.27400 5.35150 5.42042 5.50243 5.51968 5.72712 5.76439 5.97026 6.08071 6.23562 6.29153 6.34495 6.41598 6.47778 6.56915 6.66706 6.72797 6.79794 6.88683 7.13528 7.20800 7.35194 7.53054 7.64104 7.80034 7.99264 8.17289 8.34392 8.48819 8.99842 9.57590 11.02224 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.025259 B = 0.008864 C = 0.008205 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1108.230031 B = 3158.080825 C = 3411.892410 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.112 4.112 3 C 0.216 3.784 4 H 0.040 0.960 5 C -0.542 4.542 6 H 0.058 0.942 7 C 0.068 3.932 8 N -0.886 5.886 9 Si 0.886 3.114 10 H -0.274 1.274 11 H -0.284 1.284 12 H -0.284 1.284 13 N -0.531 5.531 14 C 0.060 3.940 15 C -0.113 4.113 16 C -0.137 4.137 17 C 0.090 3.910 18 H 0.061 0.939 19 O -0.388 6.388 20 C 0.034 3.966 21 C 0.068 3.932 22 H 0.039 0.961 23 H 0.044 0.956 24 H 0.025 0.975 25 H 0.034 0.966 26 H 0.092 0.908 27 H 0.260 0.740 28 H 0.037 0.963 29 H 0.065 0.935 30 H 0.059 0.941 31 H 0.063 0.937 32 H 0.052 0.948 33 H 0.064 0.936 34 H 0.035 0.965 35 H 0.079 0.921 36 H 0.038 0.962 37 H 0.045 0.955 38 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.938 3.815 -9.910 11.711 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.151 4.151 3 C 0.110 3.890 4 H 0.058 0.942 5 C -0.581 4.581 6 H 0.076 0.924 7 C -0.134 4.134 8 N -0.525 5.525 9 Si 0.714 3.286 10 H -0.199 1.199 11 H -0.211 1.211 12 H -0.210 1.210 13 N -0.257 5.257 14 C -0.069 4.069 15 C -0.151 4.151 16 C -0.175 4.175 17 C 0.032 3.968 18 H 0.079 0.921 19 O -0.306 6.306 20 C -0.063 4.063 21 C -0.061 4.061 22 H 0.058 0.942 23 H 0.064 0.936 24 H 0.044 0.956 25 H 0.052 0.948 26 H 0.111 0.889 27 H 0.070 0.930 28 H 0.055 0.945 29 H 0.084 0.916 30 H 0.078 0.922 31 H 0.082 0.918 32 H 0.071 0.929 33 H 0.083 0.917 34 H 0.054 0.946 35 H 0.098 0.902 36 H 0.057 0.943 37 H 0.064 0.936 38 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -5.238 3.589 -9.772 11.653 hybrid contribution 1.705 0.175 0.122 1.719 sum -3.533 3.764 -9.649 10.943 Atomic orbital electron populations 1.21690 0.98853 0.98345 1.00475 1.21618 0.92202 0.99176 1.02069 1.19288 0.92868 0.91049 0.85830 0.94216 1.21792 0.92740 1.37445 1.06136 0.92435 1.24900 0.97920 0.95029 0.95565 1.69882 1.34838 1.37945 1.09790 0.86629 0.86291 0.77748 0.77903 1.19908 1.21061 1.20987 1.62330 1.57843 1.01674 1.03826 1.21888 0.98734 0.89862 0.96393 1.21567 1.00444 0.98467 0.94635 1.22034 1.01505 0.96144 0.97816 1.22273 0.96578 0.91859 0.86109 0.92108 1.87893 1.40800 1.82028 1.19861 1.22699 0.95041 0.99864 0.88675 1.21818 0.97635 0.98878 0.87721 0.94167 0.93642 0.95622 0.94775 0.88941 0.92970 0.94500 0.91639 0.92226 0.91833 0.92926 0.91681 0.94611 0.90228 0.94301 0.93633 0.90682 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.77 9.72 37.15 0.36 -2.41 16 2 C -0.11 -2.67 5.09 -26.73 -0.14 -2.80 16 3 C 0.22 5.29 1.73 -68.86 -0.12 5.17 16 4 H 0.04 1.08 8.01 -51.93 -0.42 0.66 16 5 C -0.54 -14.53 7.22 -34.44 -0.25 -14.78 16 6 H 0.06 1.57 5.84 -52.49 -0.31 1.27 16 7 C 0.07 1.86 5.30 -17.82 -0.09 1.77 16 8 N -0.89 -24.90 11.30 55.43 0.63 -24.27 16 9 Si 0.89 21.33 29.54 -169.99 -5.02 16.31 16 10 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 11 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 12 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 13 N -0.53 -11.19 4.08 -228.07 -0.93 -12.12 16 14 C 0.06 1.15 5.18 -3.84 -0.02 1.13 16 15 C -0.11 -1.75 6.09 -26.65 -0.16 -1.91 16 16 C -0.14 -2.13 5.62 -26.61 -0.15 -2.28 16 17 C 0.09 1.53 2.77 -26.65 -0.07 1.46 16 18 H 0.06 1.00 7.79 -51.93 -0.40 0.60 16 19 O -0.39 -6.53 10.35 -35.23 -0.36 -6.89 16 20 C 0.03 0.42 10.82 101.05 1.09 1.51 16 21 C 0.07 1.39 4.44 -3.83 -0.02 1.38 16 22 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 23 H 0.04 0.88 7.84 -51.93 -0.41 0.47 16 24 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 25 H 0.03 0.81 6.26 -51.93 -0.33 0.48 16 26 H 0.09 2.45 5.99 -51.93 -0.31 2.14 16 27 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 28 H 0.04 0.77 7.22 -51.93 -0.38 0.40 16 29 H 0.07 1.25 8.03 -51.93 -0.42 0.84 16 30 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 31 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 32 H 0.05 0.71 7.94 -51.93 -0.41 0.30 16 33 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 34 H 0.04 0.39 7.94 -51.93 -0.41 -0.02 16 35 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 36 H 0.04 0.44 8.09 -51.93 -0.42 0.02 16 37 H 0.05 1.04 6.42 -51.93 -0.33 0.71 16 38 H 0.07 1.61 6.11 -51.93 -0.32 1.29 16 LS Contribution 291.21 15.07 4.39 4.39 Total: -1.00 -27.77 291.21 -7.40 -35.17 By element: Atomic # 1 Polarization: 5.71 SS G_CDS: -6.53 Total: -0.82 kcal Atomic # 6 Polarization: -12.20 SS G_CDS: 0.43 Total: -11.77 kcal Atomic # 7 Polarization: -36.09 SS G_CDS: -0.30 Total: -36.39 kcal Atomic # 8 Polarization: -6.53 SS G_CDS: -0.36 Total: -6.89 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.31 kcal Total LS contribution 4.39 Total: 4.39 kcal Total: -27.77 -7.40 -35.17 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000230249592.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.877 kcal (2) G-P(sol) polarization free energy of solvation -27.771 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.648 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.396 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.167 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.044 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds