Wall clock time and date at job start Sun Mar 29 2020 21:47:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53001 * 109.46970 * 2 1 4 4 H 1.08997 * 109.47444 * 56.92059 * 3 2 1 5 5 C 1.50712 * 109.47024 * 176.91821 * 3 2 1 6 6 H 1.07995 * 119.99679 * 119.99446 * 5 3 2 7 7 C 1.37873 * 119.99634 * 299.99835 * 5 3 2 8 8 N 1.31510 * 120.00270 * 0.02562 * 7 5 3 9 9 Si 1.86803 * 119.99755 * 179.97438 * 7 5 3 10 10 H 1.48504 * 109.47045 * 0.02562 * 9 7 5 11 11 H 1.48500 * 109.46894 * 119.99984 * 9 7 5 12 12 H 1.48493 * 109.47482 * 240.00063 * 9 7 5 13 13 N 1.46903 * 109.47269 * 296.91356 * 3 2 1 14 14 C 1.46838 * 111.00148 * 171.00093 * 13 3 2 15 15 C 1.53043 * 109.52641 * 185.84458 * 14 13 3 16 16 C 1.53122 * 109.27303 * 300.81902 * 15 14 13 17 17 C 1.53118 * 109.16075 * 57.65434 * 16 15 14 18 18 H 1.09000 * 109.50652 * 62.28591 * 17 16 15 19 19 O 1.42906 * 109.50327 * 182.40382 * 17 16 15 20 20 C 1.42901 * 113.99697 * 269.99997 * 19 17 16 21 21 C 1.46849 * 111.00012 * 295.21059 * 13 3 2 22 22 H 1.08999 * 109.47416 * 305.06473 * 1 2 3 23 23 H 1.09002 * 109.47255 * 65.06126 * 1 2 3 24 24 H 1.08998 * 109.47606 * 185.06451 * 1 2 3 25 25 H 1.09004 * 109.47495 * 239.99813 * 2 1 3 26 26 H 1.09000 * 109.47460 * 119.99748 * 2 1 3 27 27 H 0.97001 * 120.00098 * 180.02562 * 8 7 5 28 28 H 1.08997 * 109.46638 * 65.82413 * 14 13 3 29 29 H 1.09007 * 109.46451 * 305.85886 * 14 13 3 30 30 H 1.08993 * 109.50438 * 180.87883 * 15 14 13 31 31 H 1.09003 * 109.49926 * 60.75619 * 15 14 13 32 32 H 1.08998 * 109.52134 * 177.55534 * 16 15 14 33 33 H 1.08994 * 109.52416 * 297.74726 * 16 15 14 34 34 H 1.08999 * 109.47199 * 59.99649 * 20 19 17 35 35 H 1.09002 * 109.46622 * 180.02562 * 20 19 17 36 36 H 1.08997 * 109.46919 * 299.99725 * 20 19 17 37 37 H 1.08999 * 109.46147 * 294.17498 * 21 13 3 38 38 H 1.09004 * 109.46215 * 54.14303 * 21 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6322 1.9721 0.8611 5 6 3.5451 1.4432 0.0764 6 1 4.1256 1.8964 -0.7135 7 6 4.1808 0.8652 1.1546 8 7 3.4738 0.3128 2.1162 9 14 6.0464 0.8654 1.2490 10 1 6.6026 1.5439 0.0508 11 1 6.4801 1.5874 2.4721 12 1 6.5398 -0.5343 1.2994 13 7 1.6121 2.1132 -1.2350 14 6 1.8966 3.5526 -1.1779 15 6 1.3089 4.2396 -2.4127 16 6 1.9264 3.6279 -3.6733 17 6 1.6573 2.1206 -3.6841 18 1 0.5826 1.9430 -3.7213 19 8 2.2786 1.5333 -4.8293 20 6 1.4427 1.4937 -5.9877 21 6 2.2350 1.4951 -2.4124 22 1 -0.3634 0.5904 0.8411 23 1 -0.3634 0.4333 -0.9318 24 1 -0.3634 -1.0236 0.0907 25 1 1.8933 -0.5139 -0.8900 26 1 1.8933 -0.5138 0.8900 27 1 3.9211 -0.0936 2.8749 28 1 2.9750 3.7090 -1.1540 29 1 1.4485 3.9761 -0.2789 30 1 1.5338 5.3055 -2.3778 31 1 0.2286 4.0953 -2.4298 32 1 1.4789 4.0841 -4.5563 33 1 3.0017 3.8060 -3.6755 34 1 1.1548 2.5083 -6.2628 35 1 1.9867 1.0335 -6.8126 36 1 0.5491 0.9085 -5.7710 37 1 3.3119 1.6611 -2.3828 38 1 2.0326 0.4240 -2.4102 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000230249592.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:47:49 Heat of formation + Delta-G solvation = -72.517619 kcal Electronic energy + Delta-G solvation = -17070.965509 eV Core-core repulsion = 14526.251703 eV Total energy + Delta-G solvation = -2544.713807 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.43431 -38.32409 -35.89264 -33.79127 -32.06243 -31.06168 -28.45538 -27.29301 -25.60403 -24.16912 -23.31497 -21.22964 -20.68591 -18.33251 -17.68014 -16.99808 -16.46564 -16.03208 -15.72315 -15.41002 -14.95218 -14.65710 -14.35542 -14.11435 -13.82751 -13.35734 -13.17340 -13.05374 -12.81050 -12.60272 -12.46795 -12.20710 -11.95358 -11.86659 -11.60994 -11.51863 -11.44143 -11.19192 -10.97236 -10.45186 -10.31688 -8.96206 -8.04909 -6.26680 1.33485 1.36764 1.46517 2.38605 2.73126 3.13405 3.61252 3.91859 3.99566 4.15029 4.32039 4.48424 4.56628 4.58556 4.60269 4.72703 4.74696 4.83156 4.88968 4.93488 5.00538 5.01877 5.07371 5.12531 5.22116 5.30329 5.42211 5.46115 5.50181 5.63549 5.78625 6.03999 6.18245 6.33830 6.38831 6.67579 6.93590 7.43761 8.90453 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.025259 B = 0.008864 C = 0.008205 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1108.230031 B = 3158.080825 C = 3411.892410 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.107 4.107 3 C 0.221 3.779 4 H 0.010 0.990 5 C -0.551 4.551 6 H 0.045 0.955 7 C 0.023 3.977 8 N -0.909 5.909 9 Si 0.944 3.056 10 H -0.276 1.276 11 H -0.278 1.278 12 H -0.279 1.279 13 N -0.523 5.523 14 C 0.056 3.944 15 C -0.102 4.102 16 C -0.133 4.133 17 C 0.098 3.902 18 H 0.074 0.926 19 O -0.414 6.414 20 C 0.027 3.973 21 C 0.073 3.927 22 H 0.036 0.964 23 H 0.056 0.944 24 H 0.044 0.956 25 H 0.027 0.973 26 H 0.063 0.937 27 H 0.262 0.738 28 H 0.011 0.989 29 H 0.062 0.938 30 H 0.085 0.915 31 H 0.078 0.922 32 H 0.085 0.915 33 H 0.049 0.951 34 H 0.053 0.947 35 H 0.096 0.904 36 H 0.047 0.953 37 H 0.012 0.988 38 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.800 4.588 -11.585 13.744 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.146 4.146 3 C 0.113 3.887 4 H 0.028 0.972 5 C -0.591 4.591 6 H 0.063 0.937 7 C -0.177 4.177 8 N -0.548 5.548 9 Si 0.770 3.230 10 H -0.201 1.201 11 H -0.204 1.204 12 H -0.205 1.205 13 N -0.248 5.248 14 C -0.072 4.072 15 C -0.140 4.140 16 C -0.170 4.170 17 C 0.040 3.960 18 H 0.092 0.908 19 O -0.333 6.333 20 C -0.069 4.069 21 C -0.055 4.055 22 H 0.055 0.945 23 H 0.075 0.925 24 H 0.063 0.937 25 H 0.046 0.954 26 H 0.081 0.919 27 H 0.071 0.929 28 H 0.029 0.971 29 H 0.080 0.920 30 H 0.104 0.896 31 H 0.096 0.904 32 H 0.103 0.897 33 H 0.068 0.932 34 H 0.072 0.928 35 H 0.115 0.885 36 H 0.066 0.934 37 H 0.030 0.970 38 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -6.107 4.369 -11.462 13.703 hybrid contribution 1.975 -0.077 0.607 2.067 sum -4.132 4.293 -10.856 12.383 Atomic orbital electron populations 1.21545 0.95945 0.99699 1.00895 1.21455 0.94755 0.98122 1.00221 1.19072 0.91511 0.91547 0.86532 0.97208 1.21992 0.94159 1.37148 1.05764 0.93715 1.25571 1.01785 0.94936 0.95427 1.69992 1.36221 1.38462 1.10161 0.85731 0.81693 0.77787 0.77775 1.20120 1.20375 1.20512 1.62301 1.57186 1.02587 1.02704 1.21994 0.97500 0.88980 0.98743 1.21511 1.00861 0.99358 0.92235 1.22005 1.00886 0.95039 0.99105 1.22083 0.96686 0.92518 0.84665 0.90783 1.87857 1.42305 1.82257 1.20848 1.22966 0.95161 1.01428 0.87385 1.21744 0.95837 0.98418 0.89551 0.94488 0.92490 0.93655 0.95390 0.91886 0.92856 0.97079 0.91996 0.89643 0.90382 0.89677 0.93184 0.92798 0.88534 0.93398 0.96965 0.92260 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.93 9.72 71.98 0.70 -4.23 16 2 C -0.11 -5.19 5.09 30.59 0.16 -5.03 16 3 C 0.22 11.14 1.73 44.17 0.08 11.22 16 4 H 0.01 0.56 8.01 -2.39 -0.02 0.54 16 5 C -0.55 -30.59 7.22 25.60 0.18 -30.40 16 6 H 0.04 2.55 5.84 -2.91 -0.02 2.53 16 7 C 0.02 1.27 5.30 84.65 0.45 1.72 16 8 N -0.91 -52.30 11.30 21.45 0.24 -52.06 16 9 Si 0.94 44.62 29.54 68.60 2.03 46.65 16 10 H -0.28 -13.04 7.11 99.48 0.71 -12.33 16 11 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 12 H -0.28 -12.95 7.11 99.48 0.71 -12.24 16 13 N -0.52 -22.19 4.08 -875.47 -3.57 -25.76 16 14 C 0.06 2.16 5.18 86.33 0.45 2.61 16 15 C -0.10 -2.88 6.09 30.65 0.19 -2.69 16 16 C -0.13 -3.77 5.62 30.67 0.17 -3.59 16 17 C 0.10 3.19 2.77 30.65 0.08 3.27 16 18 H 0.07 2.21 7.79 -2.39 -0.02 2.19 16 19 O -0.41 -13.21 10.35 -148.98 -1.54 -14.76 16 20 C 0.03 0.57 10.82 113.37 1.23 1.80 16 21 C 0.07 3.03 4.44 86.33 0.38 3.41 16 22 H 0.04 1.47 8.14 -2.39 -0.02 1.46 16 23 H 0.06 2.13 7.84 -2.39 -0.02 2.11 16 24 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 25 H 0.03 1.35 6.26 -2.39 -0.01 1.33 16 26 H 0.06 3.44 5.99 -2.39 -0.01 3.42 16 27 H 0.26 14.33 8.31 -92.71 -0.77 13.56 16 28 H 0.01 0.47 7.22 -2.39 -0.02 0.45 16 29 H 0.06 2.38 8.03 -2.38 -0.02 2.36 16 30 H 0.09 2.02 8.14 -2.39 -0.02 2.00 16 31 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 32 H 0.08 1.92 7.94 -2.39 -0.02 1.90 16 33 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 34 H 0.05 0.97 7.94 -2.39 -0.02 0.95 16 35 H 0.10 1.73 8.14 -2.39 -0.02 1.71 16 36 H 0.05 0.94 8.09 -2.39 -0.02 0.92 16 37 H 0.01 0.58 6.42 -2.39 -0.02 0.56 16 38 H 0.06 2.59 6.11 -2.38 -0.01 2.58 16 Total: -1.00 -61.01 291.21 2.23 -58.78 By element: Atomic # 1 Polarization: 8.07 SS G_CDS: 1.01 Total: 9.08 kcal Atomic # 6 Polarization: -25.99 SS G_CDS: 4.07 Total: -21.93 kcal Atomic # 7 Polarization: -74.50 SS G_CDS: -3.33 Total: -77.82 kcal Atomic # 8 Polarization: -13.21 SS G_CDS: -1.54 Total: -14.76 kcal Atomic # 14 Polarization: 44.62 SS G_CDS: 2.03 Total: 46.65 kcal Total: -61.01 2.23 -58.78 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000230249592.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.741 kcal (2) G-P(sol) polarization free energy of solvation -61.008 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.749 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.232 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.777 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.518 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds