Wall clock time and date at job start Sun Mar 29 2020 22:12:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09007 * 109.47427 * 2 1 4 4 C 1.50701 * 109.47419 * 120.00339 * 2 1 3 5 5 H 1.08002 * 119.99761 * 119.99343 * 4 2 1 6 6 C 1.37871 * 119.99694 * 300.27906 * 4 2 1 7 7 N 1.31523 * 119.99908 * 179.72112 * 6 4 2 8 8 Si 1.86800 * 120.00405 * 359.71709 * 6 4 2 9 9 H 1.48500 * 109.47210 * 90.00069 * 8 6 4 10 10 H 1.48504 * 109.47424 * 210.00300 * 8 6 4 11 11 H 1.48502 * 109.46888 * 330.00390 * 8 6 4 12 12 N 1.46904 * 109.47027 * 240.00552 * 2 1 3 13 13 C 1.46901 * 110.99927 * 183.95233 * 12 2 1 14 14 C 1.46895 * 111.00014 * 59.99893 * 12 2 1 15 15 C 1.53006 * 109.47146 * 189.99813 * 14 12 2 16 16 H 1.08998 * 110.27762 * 307.09536 * 15 14 12 17 17 C 1.54941 * 110.30990 * 185.00007 * 15 14 12 18 18 C 1.55302 * 100.94221 * 204.64533 * 17 15 14 19 19 C 1.54380 * 102.25482 * 34.13236 * 18 17 15 20 20 H 1.08997 * 109.83026 * 98.15604 * 19 18 17 21 21 C 1.53002 * 109.83475 * 219.04131 * 19 18 17 22 22 O 1.43242 * 107.58797 * 338.64435 * 19 18 17 23 23 H 1.09004 * 109.46783 * 299.99852 * 1 2 3 24 24 H 1.09005 * 109.46870 * 59.99511 * 1 2 3 25 25 H 1.08998 * 109.47156 * 179.97438 * 1 2 3 26 26 H 0.96995 * 120.00181 * 179.97438 * 7 6 4 27 27 H 1.09005 * 109.46748 * 59.99910 * 13 12 2 28 28 H 1.08997 * 109.47064 * 179.97438 * 13 12 2 29 29 H 1.08998 * 109.47436 * 300.00155 * 13 12 2 30 30 H 1.09002 * 109.47500 * 309.99991 * 14 12 2 31 31 H 1.09005 * 109.47008 * 70.00353 * 14 12 2 32 32 H 1.09004 * 111.12754 * 322.56396 * 17 15 14 33 33 H 1.09001 * 111.12796 * 86.68105 * 17 15 14 34 34 H 1.09001 * 110.85439 * 152.32790 * 18 17 15 35 35 H 1.09007 * 110.84827 * 275.94591 * 18 17 15 36 36 H 1.09007 * 109.46883 * 59.99528 * 21 19 18 37 37 H 1.08996 * 109.47597 * 180.02562 * 21 19 18 38 38 H 1.09001 * 109.47106 * 300.00521 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 2.6532 -1.5886 1.1312 6 6 1.6946 -0.2428 2.4826 7 7 2.1285 -0.8661 3.5564 8 14 0.6207 1.2760 2.6542 9 1 -0.8074 0.8707 2.6929 10 1 0.9674 1.9881 3.9104 11 1 0.8484 2.1766 1.4956 12 7 2.0196 -0.6924 -1.1995 13 6 3.4850 -0.7944 -1.1872 14 6 1.5486 -0.0262 -2.4211 15 6 1.8627 -0.9040 -3.6343 16 1 2.9184 -1.1749 -3.6414 17 6 1.4881 -0.1656 -4.9438 18 6 1.2591 -1.3650 -5.9035 19 6 0.6660 -2.4321 -4.9586 20 1 -0.4204 -2.4405 -5.0459 21 6 1.2260 -3.8105 -5.3156 22 8 1.0433 -2.0838 -3.6213 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 1.8912 -0.5369 4.4374 27 1 3.8029 -1.3531 -0.3068 28 1 3.8208 -1.3115 -2.0860 29 1 3.9187 0.2052 -1.1592 30 1 0.4722 0.1326 -2.3564 31 1 2.0519 0.9348 -2.5280 32 1 0.5755 0.4174 -4.8189 33 1 2.3088 0.4633 -5.2888 34 1 0.5491 -1.1040 -6.6883 35 1 2.2025 -1.7060 -6.3302 36 1 2.3110 -3.8000 -5.2112 37 1 0.8033 -4.5591 -4.6456 38 1 0.9624 -4.0543 -6.3448 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000232001478.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:12:08 Heat of formation + Delta-G solvation = -36.801209 kcal Electronic energy + Delta-G solvation = -16676.272989 eV Core-core repulsion = 14133.107962 eV Total energy + Delta-G solvation = -2543.165027 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.52662 -36.97319 -32.95019 -32.10667 -31.57452 -30.00418 -27.83515 -25.36865 -24.31689 -22.82338 -21.31749 -20.38597 -19.22155 -16.99417 -16.51200 -15.93902 -14.92445 -14.38551 -14.22428 -13.93005 -13.47998 -13.35846 -12.90762 -12.63464 -12.33574 -12.22004 -11.91688 -11.72881 -11.55305 -11.23947 -10.95703 -10.89268 -10.74273 -10.65812 -10.42966 -10.14066 -10.05523 -9.42274 -9.16137 -8.93799 -8.51266 -7.22394 -6.01780 -3.99710 3.30253 3.39052 3.41596 3.95620 4.44025 4.53368 4.67800 4.78082 5.02990 5.24082 5.28297 5.34612 5.40754 5.56936 5.62013 5.65306 5.73710 5.80807 5.93476 6.01382 6.12522 6.16286 6.25540 6.32637 6.34879 6.48017 6.57405 6.66780 6.86697 6.97173 7.35122 7.41082 7.67068 8.02526 8.18241 8.72504 9.05552 9.60441 11.11108 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.044505 B = 0.006524 C = 0.006326 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 628.987377 B = 4291.114206 C = 4424.886638 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.181 3.819 3 H -0.005 1.005 4 C -0.503 4.503 5 H 0.083 0.917 6 C 0.069 3.931 7 N -0.901 5.901 8 Si 0.887 3.113 9 H -0.278 1.278 10 H -0.298 1.298 11 H -0.270 1.270 12 N -0.519 5.519 13 C 0.036 3.964 14 C 0.048 3.952 15 C 0.088 3.912 16 H 0.068 0.932 17 C -0.154 4.154 18 C -0.150 4.150 19 C 0.070 3.930 20 H 0.074 0.926 21 C -0.160 4.160 22 O -0.351 6.351 23 H 0.039 0.961 24 H 0.028 0.972 25 H 0.062 0.938 26 H 0.263 0.737 27 H 0.082 0.918 28 H 0.046 0.954 29 H 0.010 0.990 30 H 0.080 0.920 31 H 0.033 0.967 32 H 0.077 0.923 33 H 0.078 0.922 34 H 0.076 0.924 35 H 0.074 0.926 36 H 0.058 0.942 37 H 0.062 0.938 38 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.605 0.934 -18.300 18.394 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.074 3.926 3 H 0.012 0.988 4 C -0.541 4.541 5 H 0.101 0.899 6 C -0.132 4.132 7 N -0.539 5.539 8 Si 0.718 3.282 9 H -0.206 1.206 10 H -0.226 1.226 11 H -0.196 1.196 12 N -0.243 5.243 13 C -0.113 4.113 14 C -0.080 4.080 15 C 0.030 3.970 16 H 0.086 0.914 17 C -0.192 4.192 18 C -0.188 4.188 19 C 0.012 3.988 20 H 0.091 0.909 21 C -0.218 4.218 22 O -0.271 6.271 23 H 0.058 0.942 24 H 0.047 0.953 25 H 0.081 0.919 26 H 0.073 0.927 27 H 0.100 0.900 28 H 0.065 0.935 29 H 0.029 0.971 30 H 0.098 0.902 31 H 0.051 0.949 32 H 0.096 0.904 33 H 0.097 0.903 34 H 0.095 0.905 35 H 0.093 0.907 36 H 0.077 0.923 37 H 0.081 0.919 38 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -1.852 0.338 -17.894 17.993 hybrid contribution -0.254 1.745 0.008 1.764 sum -2.106 2.083 -17.886 18.130 Atomic orbital electron populations 1.22200 0.98564 1.01486 0.97932 1.19692 0.91491 0.92406 0.88992 0.98752 1.21010 1.31637 1.13537 0.87894 0.89867 1.24927 0.95876 0.96622 0.95824 1.69886 1.45963 1.40264 0.97824 0.86872 0.80843 0.83851 0.76658 1.20551 1.22571 1.19553 1.61885 1.09643 1.51810 1.00945 1.22290 0.88175 0.99055 1.01749 1.22316 1.01568 0.93723 0.90432 1.23043 0.94900 0.85267 0.93754 0.91377 1.23312 1.02564 0.97949 0.95395 1.23168 1.01694 0.95516 0.98407 1.22690 0.98708 0.94108 0.83287 0.90853 1.22124 1.01674 0.97104 1.00877 1.88650 1.69494 1.44544 1.24372 0.94205 0.95313 0.91876 0.92696 0.89951 0.93547 0.97130 0.90150 0.94902 0.90404 0.90301 0.90513 0.90698 0.92334 0.91860 0.92150 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.34 8.47 37.16 0.31 -3.03 16 2 C 0.18 4.49 1.65 -68.86 -0.11 4.38 16 3 H 0.00 -0.13 7.21 -51.93 -0.37 -0.50 16 4 C -0.50 -14.46 8.51 -34.44 -0.29 -14.75 16 5 H 0.08 2.59 6.64 -52.49 -0.35 2.25 16 6 C 0.07 2.02 5.45 -17.82 -0.10 1.92 16 7 N -0.90 -27.93 13.96 55.43 0.77 -27.16 16 8 Si 0.89 22.46 24.37 -169.99 -4.14 18.32 16 9 H -0.28 -6.89 6.86 56.52 0.39 -6.50 16 10 H -0.30 -7.51 7.11 56.52 0.40 -7.11 16 11 H -0.27 -6.60 6.54 56.52 0.37 -6.23 16 12 N -0.52 -11.37 4.62 -236.28 -1.09 -12.46 16 13 C 0.04 0.72 9.06 60.06 0.54 1.26 16 14 C 0.05 0.86 4.48 -3.82 -0.02 0.85 16 15 C 0.09 1.35 3.41 -25.70 -0.09 1.26 16 16 H 0.07 1.04 6.24 -51.93 -0.32 0.72 16 17 C -0.15 -1.76 6.57 -24.49 -0.16 -1.92 16 18 C -0.15 -1.51 6.54 -24.79 -0.16 -1.67 16 19 C 0.07 0.88 4.15 -26.01 -0.11 0.77 16 20 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 21 C -0.16 -1.76 9.44 37.16 0.35 -1.41 16 22 O -0.35 -5.96 10.70 -35.23 -0.38 -6.34 16 23 H 0.04 0.94 3.25 -51.93 -0.17 0.77 16 24 H 0.03 0.57 6.20 -51.93 -0.32 0.25 16 25 H 0.06 1.49 8.14 -51.93 -0.42 1.07 16 26 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 27 H 0.08 1.85 6.23 -51.93 -0.32 1.53 16 28 H 0.05 0.81 6.19 -51.93 -0.32 0.49 16 29 H 0.01 0.20 8.14 -51.93 -0.42 -0.22 16 30 H 0.08 1.46 5.83 -51.93 -0.30 1.16 16 31 H 0.03 0.56 8.12 -51.93 -0.42 0.13 16 32 H 0.08 0.87 8.06 -51.93 -0.42 0.45 16 33 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.07 0.69 7.85 -51.92 -0.41 0.28 16 36 H 0.06 0.66 8.14 -51.92 -0.42 0.24 16 37 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 38 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 LS Contribution 287.16 15.07 4.33 4.33 Total: -1.00 -31.50 287.16 -6.64 -38.13 By element: Atomic # 1 Polarization: 3.81 SS G_CDS: -6.30 Total: -2.49 kcal Atomic # 6 Polarization: -12.51 SS G_CDS: 0.17 Total: -12.34 kcal Atomic # 7 Polarization: -39.30 SS G_CDS: -0.32 Total: -39.62 kcal Atomic # 8 Polarization: -5.96 SS G_CDS: -0.38 Total: -6.34 kcal Atomic # 14 Polarization: 22.46 SS G_CDS: -4.14 Total: 18.32 kcal Total LS contribution 4.33 Total: 4.33 kcal Total: -31.50 -6.64 -38.13 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000232001478.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.333 kcal (2) G-P(sol) polarization free energy of solvation -31.496 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.164 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.638 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.134 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.801 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds