Wall clock time and date at job start Sun Mar 29 2020 22:12:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09007 * 109.47427 * 2 1 4 4 C 1.50701 * 109.47419 * 120.00339 * 2 1 3 5 5 H 1.08002 * 119.99761 * 119.99343 * 4 2 1 6 6 C 1.37871 * 119.99694 * 300.27906 * 4 2 1 7 7 N 1.31523 * 119.99908 * 179.72112 * 6 4 2 8 8 Si 1.86800 * 120.00405 * 359.71709 * 6 4 2 9 9 H 1.48500 * 109.47210 * 90.00069 * 8 6 4 10 10 H 1.48504 * 109.47424 * 210.00300 * 8 6 4 11 11 H 1.48502 * 109.46888 * 330.00390 * 8 6 4 12 12 N 1.46904 * 109.47027 * 240.00552 * 2 1 3 13 13 C 1.46901 * 110.99927 * 183.95233 * 12 2 1 14 14 C 1.46895 * 111.00014 * 59.99893 * 12 2 1 15 15 C 1.53006 * 109.47146 * 189.99813 * 14 12 2 16 16 H 1.08998 * 110.27762 * 307.09536 * 15 14 12 17 17 C 1.54941 * 110.30990 * 185.00007 * 15 14 12 18 18 C 1.55302 * 100.94221 * 204.64533 * 17 15 14 19 19 C 1.54380 * 102.25482 * 34.13236 * 18 17 15 20 20 H 1.08997 * 109.83026 * 98.15604 * 19 18 17 21 21 C 1.53002 * 109.83475 * 219.04131 * 19 18 17 22 22 O 1.43242 * 107.58797 * 338.64435 * 19 18 17 23 23 H 1.09004 * 109.46783 * 299.99852 * 1 2 3 24 24 H 1.09005 * 109.46870 * 59.99511 * 1 2 3 25 25 H 1.08998 * 109.47156 * 179.97438 * 1 2 3 26 26 H 0.96995 * 120.00181 * 179.97438 * 7 6 4 27 27 H 1.09005 * 109.46748 * 59.99910 * 13 12 2 28 28 H 1.08997 * 109.47064 * 179.97438 * 13 12 2 29 29 H 1.08998 * 109.47436 * 300.00155 * 13 12 2 30 30 H 1.09002 * 109.47500 * 309.99991 * 14 12 2 31 31 H 1.09005 * 109.47008 * 70.00353 * 14 12 2 32 32 H 1.09004 * 111.12754 * 322.56396 * 17 15 14 33 33 H 1.09001 * 111.12796 * 86.68105 * 17 15 14 34 34 H 1.09001 * 110.85439 * 152.32790 * 18 17 15 35 35 H 1.09007 * 110.84827 * 275.94591 * 18 17 15 36 36 H 1.09007 * 109.46883 * 59.99528 * 21 19 18 37 37 H 1.08996 * 109.47597 * 180.02562 * 21 19 18 38 38 H 1.09001 * 109.47106 * 300.00521 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 2.6532 -1.5886 1.1312 6 6 1.6946 -0.2428 2.4826 7 7 2.1285 -0.8661 3.5564 8 14 0.6207 1.2760 2.6542 9 1 -0.8074 0.8707 2.6929 10 1 0.9674 1.9881 3.9104 11 1 0.8484 2.1766 1.4956 12 7 2.0196 -0.6924 -1.1995 13 6 3.4850 -0.7944 -1.1872 14 6 1.5486 -0.0262 -2.4211 15 6 1.8627 -0.9040 -3.6343 16 1 2.9184 -1.1749 -3.6414 17 6 1.4881 -0.1656 -4.9438 18 6 1.2591 -1.3650 -5.9035 19 6 0.6660 -2.4321 -4.9586 20 1 -0.4204 -2.4405 -5.0459 21 6 1.2260 -3.8105 -5.3156 22 8 1.0433 -2.0838 -3.6213 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 1.8912 -0.5369 4.4374 27 1 3.8029 -1.3531 -0.3068 28 1 3.8208 -1.3115 -2.0860 29 1 3.9187 0.2052 -1.1592 30 1 0.4722 0.1326 -2.3564 31 1 2.0519 0.9348 -2.5280 32 1 0.5755 0.4174 -4.8189 33 1 2.3088 0.4633 -5.2888 34 1 0.5491 -1.1040 -6.6883 35 1 2.2025 -1.7060 -6.3302 36 1 2.3110 -3.8000 -5.2112 37 1 0.8033 -4.5591 -4.6456 38 1 0.9624 -4.0543 -6.3448 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000232001478.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:12:07 Heat of formation + Delta-G solvation = -59.684126 kcal Electronic energy + Delta-G solvation = -16677.265267 eV Core-core repulsion = 14133.107962 eV Total energy + Delta-G solvation = -2544.157305 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.63103 -38.64165 -34.89943 -33.13620 -32.98216 -31.71604 -29.18094 -27.07766 -26.04912 -24.16124 -22.28977 -21.73597 -20.85458 -18.90858 -17.82258 -17.33453 -16.55446 -15.98426 -15.71196 -15.30047 -14.93573 -14.64295 -14.37770 -14.19525 -13.78312 -13.64729 -13.39734 -12.91582 -12.74324 -12.61098 -12.54364 -12.47975 -12.27758 -12.04505 -11.72181 -11.63493 -11.50545 -11.36880 -10.97920 -10.73415 -10.30463 -8.92275 -8.28101 -6.31339 1.29605 1.33699 1.44493 2.31498 2.91377 3.05192 3.25846 3.65653 3.90293 3.95839 4.15609 4.34252 4.34465 4.48592 4.52474 4.54673 4.60256 4.66631 4.68580 4.79454 4.80690 4.85752 4.91863 4.93807 5.03471 5.08889 5.18496 5.22617 5.31439 5.40553 5.44324 5.64543 6.03238 6.32422 6.44834 6.72855 6.76800 7.33287 8.88429 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.044505 B = 0.006524 C = 0.006326 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 628.987377 B = 4291.114206 C = 4424.886638 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.184 3.816 3 H -0.009 1.009 4 C -0.508 4.508 5 H 0.040 0.960 6 C 0.011 3.989 7 N -0.949 5.949 8 Si 0.951 3.049 9 H -0.266 1.266 10 H -0.296 1.296 11 H -0.251 1.251 12 N -0.539 5.539 13 C 0.042 3.958 14 C 0.048 3.952 15 C 0.086 3.914 16 H 0.064 0.936 17 C -0.146 4.146 18 C -0.140 4.140 19 C 0.057 3.943 20 H 0.077 0.923 21 C -0.157 4.157 22 O -0.391 6.391 23 H 0.035 0.965 24 H 0.063 0.937 25 H 0.049 0.951 26 H 0.266 0.734 27 H 0.046 0.954 28 H 0.074 0.926 29 H 0.017 0.983 30 H 0.078 0.922 31 H 0.048 0.952 32 H 0.082 0.918 33 H 0.099 0.901 34 H 0.101 0.899 35 H 0.085 0.915 36 H 0.052 0.948 37 H 0.047 0.953 38 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.675 2.638 -21.057 21.390 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.076 3.924 3 H 0.009 0.991 4 C -0.546 4.546 5 H 0.058 0.942 6 C -0.186 4.186 7 N -0.589 5.589 8 Si 0.778 3.222 9 H -0.192 1.192 10 H -0.224 1.224 11 H -0.175 1.175 12 N -0.263 5.263 13 C -0.106 4.106 14 C -0.080 4.080 15 C 0.028 3.972 16 H 0.082 0.918 17 C -0.184 4.184 18 C -0.177 4.177 19 C 0.000 4.000 20 H 0.095 0.905 21 C -0.215 4.215 22 O -0.311 6.311 23 H 0.054 0.946 24 H 0.082 0.918 25 H 0.068 0.932 26 H 0.075 0.925 27 H 0.065 0.935 28 H 0.092 0.908 29 H 0.036 0.964 30 H 0.096 0.904 31 H 0.066 0.934 32 H 0.101 0.899 33 H 0.117 0.883 34 H 0.120 0.880 35 H 0.104 0.896 36 H 0.071 0.929 37 H 0.066 0.934 38 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -2.922 2.037 -20.690 20.994 hybrid contribution 0.139 1.095 0.821 1.376 sum -2.783 3.133 -19.869 20.306 Atomic orbital electron populations 1.22093 0.97032 1.01137 0.99391 1.19529 0.92626 0.91576 0.88650 0.99141 1.21253 1.30827 1.12395 0.90144 0.94169 1.25800 0.97430 1.00085 0.95305 1.70040 1.47893 1.42486 0.98524 0.85826 0.79254 0.79930 0.77207 1.19180 1.22389 1.17498 1.61807 1.10326 1.52559 1.01603 1.22189 0.87754 0.99203 1.01447 1.22425 1.01331 0.94766 0.89464 1.23043 0.94539 0.85201 0.94426 0.91814 1.23291 1.03503 0.98329 0.93271 1.23152 1.02714 0.93763 0.98063 1.22965 0.99242 0.95519 0.82260 0.90503 1.22110 1.01110 0.96085 1.02163 1.88610 1.69832 1.45307 1.27358 0.94608 0.91841 0.93210 0.92525 0.93468 0.90781 0.96436 0.90364 0.93420 0.89910 0.88255 0.88031 0.89634 0.92889 0.93414 0.89365 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.21 8.47 71.98 0.61 -5.60 16 2 C 0.18 9.04 1.65 44.17 0.07 9.12 16 3 H -0.01 -0.44 7.21 -2.38 -0.02 -0.45 16 4 C -0.51 -30.11 8.51 25.60 0.22 -29.90 16 5 H 0.04 2.66 6.64 -2.91 -0.02 2.64 16 6 C 0.01 0.64 5.45 84.65 0.46 1.10 16 7 N -0.95 -60.71 13.96 21.45 0.30 -60.42 16 8 Si 0.95 46.03 24.37 68.60 1.67 47.70 16 9 H -0.27 -12.26 6.86 99.48 0.68 -11.58 16 10 H -0.30 -14.16 7.11 99.48 0.71 -13.45 16 11 H -0.25 -11.28 6.54 99.48 0.65 -10.63 16 12 N -0.54 -23.42 4.62 -901.44 -4.17 -27.59 16 13 C 0.04 1.72 9.06 127.69 1.16 2.88 16 14 C 0.05 1.62 4.48 86.31 0.39 2.01 16 15 C 0.09 2.43 3.41 31.26 0.11 2.53 16 16 H 0.06 1.83 6.24 -2.39 -0.01 1.82 16 17 C -0.15 -2.78 6.57 32.05 0.21 -2.57 16 18 C -0.14 -2.27 6.54 31.85 0.21 -2.06 16 19 C 0.06 1.31 4.15 31.06 0.13 1.44 16 20 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 21 C -0.16 -3.19 9.44 71.98 0.68 -2.51 16 22 O -0.39 -12.80 10.70 -148.98 -1.59 -14.39 16 23 H 0.04 1.61 3.25 -2.38 -0.01 1.60 16 24 H 0.06 2.36 6.20 -2.38 -0.01 2.35 16 25 H 0.05 2.31 8.14 -2.39 -0.02 2.30 16 26 H 0.27 15.89 8.31 -92.71 -0.77 15.12 16 27 H 0.05 2.23 6.23 -2.38 -0.01 2.21 16 28 H 0.07 2.56 6.19 -2.39 -0.01 2.54 16 29 H 0.02 0.67 8.14 -2.39 -0.02 0.65 16 30 H 0.08 2.64 5.83 -2.39 -0.01 2.63 16 31 H 0.05 1.47 8.12 -2.38 -0.02 1.45 16 32 H 0.08 1.52 8.06 -2.38 -0.02 1.50 16 33 H 0.10 1.51 8.14 -2.39 -0.02 1.49 16 34 H 0.10 1.19 8.14 -2.39 -0.02 1.17 16 35 H 0.09 1.23 7.85 -2.38 -0.02 1.21 16 36 H 0.05 1.11 8.14 -2.38 -0.02 1.09 16 37 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 38 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 Total: -1.00 -70.03 287.16 1.39 -68.65 By element: Atomic # 1 Polarization: 8.68 SS G_CDS: 0.94 Total: 9.62 kcal Atomic # 6 Polarization: -27.81 SS G_CDS: 4.24 Total: -23.57 kcal Atomic # 7 Polarization: -84.14 SS G_CDS: -3.87 Total: -88.01 kcal Atomic # 8 Polarization: -12.80 SS G_CDS: -1.59 Total: -14.39 kcal Atomic # 14 Polarization: 46.03 SS G_CDS: 1.67 Total: 47.70 kcal Total: -70.03 1.39 -68.65 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000232001478.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.962 kcal (2) G-P(sol) polarization free energy of solvation -70.033 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.071 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.387 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.646 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.684 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds