Wall clock time and date at job start Sun Mar 29 2020 22:12:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09004 * 109.47189 * 2 1 4 4 C 1.50700 * 109.46885 * 240.00241 * 2 1 3 5 5 H 1.07998 * 119.99662 * 240.00061 * 4 2 1 6 6 C 1.37882 * 120.00106 * 60.00279 * 4 2 1 7 7 N 1.31511 * 119.99818 * 359.97438 * 6 4 2 8 8 Si 1.86793 * 119.99893 * 179.97438 * 6 4 2 9 9 H 1.48508 * 109.47082 * 59.99981 * 8 6 4 10 10 H 1.48495 * 109.47223 * 179.97438 * 8 6 4 11 11 H 1.48505 * 109.47276 * 299.99992 * 8 6 4 12 12 N 1.46894 * 109.46848 * 120.00090 * 2 1 3 13 13 C 1.46903 * 110.99830 * 58.95783 * 12 2 1 14 14 C 1.46896 * 111.00451 * 294.99919 * 12 2 1 15 15 C 1.52999 * 109.47250 * 190.00363 * 14 12 2 16 16 H 1.09001 * 109.82265 * 305.88064 * 15 14 12 17 17 C 1.54387 * 109.82779 * 185.00172 * 15 14 12 18 18 C 1.55305 * 102.24962 * 219.03797 * 17 15 14 19 19 C 1.54947 * 100.94425 * 34.12994 * 18 17 15 20 20 H 1.08998 * 110.30702 * 82.47351 * 19 18 17 21 21 C 1.53002 * 110.39442 * 204.59649 * 19 18 17 22 22 O 1.43236 * 109.90939 * 66.81963 * 15 14 12 23 23 H 1.09004 * 109.46650 * 59.99636 * 1 2 3 24 24 H 1.08995 * 109.47256 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.47212 * 299.99884 * 1 2 3 26 26 H 0.97000 * 119.99877 * 180.02562 * 7 6 4 27 27 H 1.09000 * 109.47056 * 296.03637 * 13 12 2 28 28 H 1.09000 * 109.47450 * 56.04720 * 13 12 2 29 29 H 1.09005 * 109.46691 * 176.04370 * 13 12 2 30 30 H 1.08999 * 109.47260 * 70.00221 * 14 12 2 31 31 H 1.08998 * 109.46921 * 310.00067 * 14 12 2 32 32 H 1.08998 * 110.84635 * 337.22156 * 17 15 14 33 33 H 1.09003 * 110.84843 * 100.84979 * 17 15 14 34 34 H 1.09002 * 111.12665 * 152.05447 * 18 17 15 35 35 H 1.09008 * 111.12319 * 276.21511 * 18 17 15 36 36 H 1.08998 * 109.46997 * 177.21999 * 21 19 18 37 37 H 1.08997 * 109.47228 * 297.21693 * 21 19 18 38 38 H 1.08997 * 109.46722 * 57.21652 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1314 6 6 1.6993 -0.2392 -2.4828 7 7 0.9428 0.8298 -2.6034 8 14 2.3224 -1.1194 -4.0080 9 1 1.8279 -2.5197 -4.0082 10 1 1.8269 -0.4197 -5.2204 11 1 3.8075 -1.1189 -4.0078 12 7 2.0196 -0.6925 1.1994 13 6 1.5283 -2.0761 1.2458 14 6 1.6487 0.0391 2.4180 15 6 2.3789 -0.5664 3.6185 16 1 2.1841 -1.6377 3.6678 17 6 1.9006 0.1133 4.9196 18 6 3.2181 0.2311 5.7334 19 6 4.2445 0.4730 4.5981 20 1 4.2547 1.5257 4.3154 21 6 5.6409 0.0287 5.0381 22 8 3.7873 -0.3335 3.5009 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 0.7082 1.1610 -3.4844 27 1 0.4419 -2.0731 1.3347 28 1 1.8167 -2.5950 0.3317 29 1 1.9617 -2.5869 2.1057 30 1 0.5723 -0.0346 2.5726 31 1 1.9298 1.0869 2.3125 32 1 1.4837 1.0987 4.7118 33 1 1.1771 -0.5133 5.4413 34 1 3.1826 1.0784 6.4181 35 1 3.4341 -0.6944 6.2674 36 1 6.3407 0.1594 4.2127 37 1 5.9635 0.6319 5.8868 38 1 5.6133 -1.0215 5.3284 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000232001480.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:12:09 Heat of formation + Delta-G solvation = -46.480202 kcal Electronic energy + Delta-G solvation = -16617.443685 eV Core-core repulsion = 14073.858946 eV Total energy + Delta-G solvation = -2543.584740 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.44104 -36.87567 -32.94930 -32.02542 -31.52036 -28.83181 -27.31652 -25.18095 -25.01540 -22.75106 -21.27141 -20.35796 -18.95035 -16.71465 -16.09384 -15.75872 -14.82879 -14.34919 -14.09185 -13.77670 -13.60349 -13.03589 -12.64509 -12.55739 -12.19611 -11.95442 -11.57645 -11.44456 -11.17393 -10.96464 -10.93062 -10.74341 -10.68757 -10.53382 -10.48846 -10.33199 -9.95093 -9.74369 -9.05021 -8.76746 -8.31529 -6.97133 -5.94002 -3.96887 3.37737 3.41250 3.45106 4.02811 4.47717 4.62019 4.82090 4.89257 5.19595 5.29393 5.37691 5.42871 5.52020 5.64020 5.70224 5.74113 5.85690 5.89454 6.03126 6.12634 6.22103 6.27059 6.34596 6.46403 6.58040 6.74309 6.88608 6.97575 7.19777 7.46028 7.61638 7.79042 7.92059 8.23462 8.48503 8.71253 9.09213 9.67606 11.13353 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.040273 B = 0.006300 C = 0.005913 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 695.095811 B = 4443.204138 C = 4734.579163 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.210 3.790 3 H 0.038 0.962 4 C -0.497 4.497 5 H 0.062 0.938 6 C 0.057 3.943 7 N -0.897 5.897 8 Si 0.897 3.103 9 H -0.278 1.278 10 H -0.289 1.289 11 H -0.277 1.277 12 N -0.526 5.526 13 C 0.033 3.967 14 C 0.047 3.953 15 C 0.087 3.913 16 H 0.075 0.925 17 C -0.153 4.153 18 C -0.151 4.151 19 C 0.070 3.930 20 H 0.065 0.935 21 C -0.148 4.148 22 O -0.352 6.352 23 H 0.087 0.913 24 H 0.029 0.971 25 H 0.005 0.995 26 H 0.260 0.740 27 H 0.013 0.987 28 H 0.074 0.926 29 H 0.041 0.959 30 H 0.032 0.968 31 H 0.068 0.932 32 H 0.076 0.924 33 H 0.077 0.923 34 H 0.076 0.924 35 H 0.075 0.925 36 H 0.063 0.937 37 H 0.063 0.937 38 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.416 -1.072 15.177 15.405 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.104 3.896 3 H 0.055 0.945 4 C -0.535 4.535 5 H 0.080 0.920 6 C -0.144 4.144 7 N -0.537 5.537 8 Si 0.725 3.275 9 H -0.204 1.204 10 H -0.215 1.215 11 H -0.202 1.202 12 N -0.249 5.249 13 C -0.115 4.115 14 C -0.082 4.082 15 C 0.028 3.972 16 H 0.093 0.907 17 C -0.191 4.191 18 C -0.189 4.189 19 C 0.012 3.988 20 H 0.083 0.917 21 C -0.206 4.206 22 O -0.271 6.271 23 H 0.106 0.894 24 H 0.048 0.952 25 H 0.024 0.976 26 H 0.069 0.931 27 H 0.031 0.969 28 H 0.092 0.908 29 H 0.060 0.940 30 H 0.050 0.950 31 H 0.086 0.914 32 H 0.095 0.905 33 H 0.095 0.905 34 H 0.095 0.905 35 H 0.093 0.907 36 H 0.082 0.918 37 H 0.081 0.919 38 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 2.987 -1.046 14.822 15.156 hybrid contribution -0.876 -0.249 -0.673 1.132 sum 2.112 -1.295 14.149 14.364 Atomic orbital electron populations 1.22407 1.01076 0.99248 1.00367 1.19307 0.89512 0.94583 0.86203 0.94455 1.21109 1.30302 1.12390 0.89712 0.91973 1.24929 0.95317 0.95172 0.98966 1.69880 1.37239 1.23166 1.23365 0.86583 0.79264 0.79555 0.82113 1.20420 1.21458 1.20232 1.62259 1.59271 1.01605 1.01735 1.22268 0.96320 0.91621 1.01302 1.22402 0.95946 0.98654 0.91212 1.22820 0.81683 0.99203 0.93446 0.90673 1.23173 0.97876 1.01963 0.96064 1.23302 0.95006 1.02421 0.98141 1.22924 0.94082 0.95414 0.86361 0.91698 1.21850 0.95893 1.01670 1.01142 1.88618 1.21898 1.71088 1.45527 0.89417 0.95168 0.97552 0.93061 0.96898 0.90774 0.93982 0.94958 0.91372 0.90498 0.90477 0.90485 0.90664 0.91783 0.91854 0.92224 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.27 8.27 37.16 0.31 -3.96 16 2 C 0.21 5.51 2.34 -68.87 -0.16 5.35 16 3 H 0.04 1.08 8.03 -51.93 -0.42 0.66 16 4 C -0.50 -14.05 7.88 -34.44 -0.27 -14.33 16 5 H 0.06 1.77 6.77 -52.49 -0.36 1.41 16 6 C 0.06 1.60 5.30 -17.82 -0.09 1.51 16 7 N -0.90 -26.12 11.32 55.43 0.63 -25.49 16 8 Si 0.90 21.88 29.54 -169.99 -5.02 16.86 16 9 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 10 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 11 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 12 N -0.53 -12.00 4.72 -236.29 -1.12 -13.11 16 13 C 0.03 0.69 8.57 60.07 0.51 1.21 16 14 C 0.05 0.90 3.93 -3.83 -0.02 0.88 16 15 C 0.09 1.40 3.48 -26.00 -0.09 1.30 16 16 H 0.08 1.21 6.33 -51.93 -0.33 0.88 16 17 C -0.15 -1.86 6.54 -24.78 -0.16 -2.02 16 18 C -0.15 -1.63 6.57 -24.48 -0.16 -1.79 16 19 C 0.07 0.93 4.07 -25.70 -0.10 0.83 16 20 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 21 C -0.15 -1.67 9.63 37.16 0.36 -1.31 16 22 O -0.35 -6.25 10.68 -35.23 -0.38 -6.62 16 23 H 0.09 2.40 6.07 -51.93 -0.32 2.08 16 24 H 0.03 0.72 6.48 -51.93 -0.34 0.39 16 25 H 0.01 0.13 6.75 -51.93 -0.35 -0.22 16 26 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 27 H 0.01 0.26 6.51 -51.93 -0.34 -0.08 16 28 H 0.07 1.65 6.41 -51.93 -0.33 1.31 16 29 H 0.04 0.77 6.36 -51.93 -0.33 0.44 16 30 H 0.03 0.60 6.94 -51.93 -0.36 0.24 16 31 H 0.07 1.35 8.00 -51.93 -0.42 0.94 16 32 H 0.08 0.92 7.85 -51.93 -0.41 0.51 16 33 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 34 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.07 0.76 8.06 -51.92 -0.42 0.34 16 36 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 37 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 38 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 LS Contribution 291.89 15.07 4.40 4.40 Total: -1.00 -30.15 291.89 -7.74 -37.89 By element: Atomic # 1 Polarization: 4.78 SS G_CDS: -6.38 Total: -1.60 kcal Atomic # 6 Polarization: -12.45 SS G_CDS: 0.12 Total: -12.33 kcal Atomic # 7 Polarization: -38.12 SS G_CDS: -0.49 Total: -38.61 kcal Atomic # 8 Polarization: -6.25 SS G_CDS: -0.38 Total: -6.62 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.86 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -30.15 -7.74 -37.89 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000232001480.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.590 kcal (2) G-P(sol) polarization free energy of solvation -30.146 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.736 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.744 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.891 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.480 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds