Wall clock time and date at job start Sun Mar 29 2020 22:12:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09004 * 109.47189 * 2 1 4 4 C 1.50700 * 109.46885 * 240.00241 * 2 1 3 5 5 H 1.07998 * 119.99662 * 240.00061 * 4 2 1 6 6 C 1.37882 * 120.00106 * 60.00279 * 4 2 1 7 7 N 1.31511 * 119.99818 * 359.97438 * 6 4 2 8 8 Si 1.86793 * 119.99893 * 179.97438 * 6 4 2 9 9 H 1.48508 * 109.47082 * 59.99981 * 8 6 4 10 10 H 1.48495 * 109.47223 * 179.97438 * 8 6 4 11 11 H 1.48505 * 109.47276 * 299.99992 * 8 6 4 12 12 N 1.46894 * 109.46848 * 120.00090 * 2 1 3 13 13 C 1.46903 * 110.99830 * 58.95783 * 12 2 1 14 14 C 1.46896 * 111.00451 * 294.99919 * 12 2 1 15 15 C 1.52999 * 109.47250 * 190.00363 * 14 12 2 16 16 H 1.09001 * 109.82265 * 305.88064 * 15 14 12 17 17 C 1.54387 * 109.82779 * 185.00172 * 15 14 12 18 18 C 1.55305 * 102.24962 * 219.03797 * 17 15 14 19 19 C 1.54947 * 100.94425 * 34.12994 * 18 17 15 20 20 H 1.08998 * 110.30702 * 82.47351 * 19 18 17 21 21 C 1.53002 * 110.39442 * 204.59649 * 19 18 17 22 22 O 1.43236 * 109.90939 * 66.81963 * 15 14 12 23 23 H 1.09004 * 109.46650 * 59.99636 * 1 2 3 24 24 H 1.08995 * 109.47256 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.47212 * 299.99884 * 1 2 3 26 26 H 0.97000 * 119.99877 * 180.02562 * 7 6 4 27 27 H 1.09000 * 109.47056 * 296.03637 * 13 12 2 28 28 H 1.09000 * 109.47450 * 56.04720 * 13 12 2 29 29 H 1.09005 * 109.46691 * 176.04370 * 13 12 2 30 30 H 1.08999 * 109.47260 * 70.00221 * 14 12 2 31 31 H 1.08998 * 109.46921 * 310.00067 * 14 12 2 32 32 H 1.08998 * 110.84635 * 337.22156 * 17 15 14 33 33 H 1.09003 * 110.84843 * 100.84979 * 17 15 14 34 34 H 1.09002 * 111.12665 * 152.05447 * 18 17 15 35 35 H 1.09008 * 111.12319 * 276.21511 * 18 17 15 36 36 H 1.08998 * 109.46997 * 177.21999 * 21 19 18 37 37 H 1.08997 * 109.47228 * 297.21693 * 21 19 18 38 38 H 1.08997 * 109.46722 * 57.21652 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1314 6 6 1.6993 -0.2392 -2.4828 7 7 0.9428 0.8298 -2.6034 8 14 2.3224 -1.1194 -4.0080 9 1 1.8279 -2.5197 -4.0082 10 1 1.8269 -0.4197 -5.2204 11 1 3.8075 -1.1189 -4.0078 12 7 2.0196 -0.6925 1.1994 13 6 1.5283 -2.0761 1.2458 14 6 1.6487 0.0391 2.4180 15 6 2.3789 -0.5664 3.6185 16 1 2.1841 -1.6377 3.6678 17 6 1.9006 0.1133 4.9196 18 6 3.2181 0.2311 5.7334 19 6 4.2445 0.4730 4.5981 20 1 4.2547 1.5257 4.3154 21 6 5.6409 0.0287 5.0381 22 8 3.7873 -0.3335 3.5009 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 0.7082 1.1610 -3.4844 27 1 0.4419 -2.0731 1.3347 28 1 1.8167 -2.5950 0.3317 29 1 1.9617 -2.5869 2.1057 30 1 0.5723 -0.0346 2.5726 31 1 1.9298 1.0869 2.3125 32 1 1.4837 1.0987 4.7118 33 1 1.1771 -0.5133 5.4413 34 1 3.1826 1.0784 6.4181 35 1 3.4341 -0.6944 6.2674 36 1 6.3407 0.1594 4.2127 37 1 5.9635 0.6319 5.8868 38 1 5.6133 -1.0215 5.3284 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000232001480.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:12:09 Heat of formation + Delta-G solvation = -66.539399 kcal Electronic energy + Delta-G solvation = -16618.313517 eV Core-core repulsion = 14073.858946 eV Total energy + Delta-G solvation = -2544.454572 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.64070 -38.63209 -34.89314 -33.11661 -32.86019 -30.61749 -28.78828 -27.23794 -26.56599 -24.17808 -22.30536 -21.76382 -20.67814 -18.24606 -17.81212 -17.19174 -16.53577 -16.07583 -15.61930 -15.16011 -14.95243 -14.47698 -14.13217 -14.00751 -13.51556 -13.26546 -13.05489 -12.94920 -12.69381 -12.60386 -12.59031 -12.46166 -12.22417 -12.08307 -11.99345 -11.66303 -11.60685 -11.45986 -10.90175 -10.49551 -10.29515 -8.75390 -8.10621 -6.21460 1.41933 1.44349 1.51925 2.43232 2.93330 3.18068 3.46207 3.66477 3.89904 3.93314 4.18353 4.35138 4.45150 4.51400 4.58215 4.62140 4.69406 4.77738 4.82196 4.83869 4.88096 4.91625 4.96138 5.09529 5.13679 5.16514 5.22519 5.33535 5.37859 5.53858 5.70852 5.79114 6.19686 6.36541 6.51804 6.80436 6.92410 7.47604 8.95669 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.040273 B = 0.006300 C = 0.005913 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 695.095811 B = 4443.204138 C = 4734.579163 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.214 3.786 3 H -0.002 1.002 4 C -0.516 4.516 5 H 0.055 0.945 6 C 0.010 3.990 7 N -0.922 5.922 8 Si 0.961 3.039 9 H -0.270 1.270 10 H -0.282 1.282 11 H -0.275 1.275 12 N -0.543 5.543 13 C 0.040 3.960 14 C 0.049 3.951 15 C 0.087 3.913 16 H 0.077 0.923 17 C -0.147 4.147 18 C -0.138 4.138 19 C 0.055 3.945 20 H 0.058 0.942 21 C -0.144 4.144 22 O -0.389 6.389 23 H 0.061 0.939 24 H 0.033 0.967 25 H 0.025 0.975 26 H 0.261 0.739 27 H 0.018 0.982 28 H 0.053 0.947 29 H 0.069 0.931 30 H 0.041 0.959 31 H 0.050 0.950 32 H 0.077 0.923 33 H 0.100 0.900 34 H 0.102 0.898 35 H 0.088 0.912 36 H 0.048 0.952 37 H 0.091 0.909 38 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.462 -1.852 16.825 17.105 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.107 3.893 3 H 0.016 0.984 4 C -0.555 4.555 5 H 0.073 0.927 6 C -0.188 4.188 7 N -0.562 5.562 8 Si 0.786 3.214 9 H -0.195 1.195 10 H -0.208 1.208 11 H -0.200 1.200 12 N -0.266 5.266 13 C -0.108 4.108 14 C -0.080 4.080 15 C 0.029 3.971 16 H 0.095 0.905 17 C -0.185 4.185 18 C -0.175 4.175 19 C -0.002 4.002 20 H 0.076 0.924 21 C -0.201 4.201 22 O -0.309 6.309 23 H 0.080 0.920 24 H 0.052 0.948 25 H 0.044 0.956 26 H 0.070 0.930 27 H 0.037 0.963 28 H 0.072 0.928 29 H 0.087 0.913 30 H 0.059 0.941 31 H 0.069 0.931 32 H 0.096 0.904 33 H 0.119 0.881 34 H 0.121 0.879 35 H 0.106 0.894 36 H 0.067 0.933 37 H 0.110 0.890 38 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 3.035 -1.829 16.494 16.870 hybrid contribution -0.857 0.036 -1.147 1.432 sum 2.178 -1.793 15.346 15.604 Atomic orbital electron populations 1.22179 1.00137 0.99220 0.99978 1.19057 0.90102 0.92640 0.87488 0.98387 1.21365 1.30592 1.12454 0.91043 0.92728 1.25718 0.95406 0.95850 1.01875 1.70010 1.37913 1.24215 1.24059 0.85570 0.78599 0.78744 0.78451 1.19473 1.20772 1.20043 1.62146 1.59916 1.02629 1.01936 1.22213 0.96741 0.90379 1.01457 1.22473 0.96918 0.97611 0.90987 1.22806 0.81189 0.99368 0.93737 0.90529 1.23165 0.99091 1.02000 0.94207 1.23276 0.92761 1.04149 0.97327 1.23216 0.95920 0.94608 0.86450 0.92446 1.21842 0.94341 1.02342 1.01556 1.88580 1.22674 1.71802 1.47893 0.92046 0.94808 0.95577 0.92958 0.96320 0.92784 0.91296 0.94132 0.93112 0.90427 0.88142 0.87934 0.89381 0.93323 0.89006 0.92007 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -7.83 8.27 71.98 0.60 -7.23 16 2 C 0.21 11.54 2.34 44.17 0.10 11.64 16 3 H 0.00 -0.11 8.03 -2.38 -0.02 -0.13 16 4 C -0.52 -29.81 7.88 25.60 0.20 -29.61 16 5 H 0.05 3.17 6.77 -2.91 -0.02 3.15 16 6 C 0.01 0.56 5.30 84.66 0.45 1.00 16 7 N -0.92 -54.63 11.32 21.45 0.24 -54.38 16 8 Si 0.96 45.16 29.54 68.60 2.03 47.19 16 9 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 10 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 11 H -0.28 -12.77 7.11 99.48 0.71 -12.07 16 12 N -0.54 -25.03 4.72 -901.47 -4.25 -29.28 16 13 C 0.04 1.64 8.57 127.69 1.09 2.74 16 14 C 0.05 1.85 3.93 86.30 0.34 2.19 16 15 C 0.09 2.68 3.48 31.06 0.11 2.79 16 16 H 0.08 2.32 6.33 -2.39 -0.02 2.30 16 17 C -0.15 -3.16 6.54 31.86 0.21 -2.95 16 18 C -0.14 -2.52 6.57 32.05 0.21 -2.31 16 19 C 0.06 1.39 4.07 31.26 0.13 1.52 16 20 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 21 C -0.14 -2.98 9.63 71.98 0.69 -2.29 16 22 O -0.39 -13.61 10.68 -148.98 -1.59 -15.20 16 23 H 0.06 3.42 6.07 -2.38 -0.01 3.40 16 24 H 0.03 1.62 6.48 -2.39 -0.02 1.61 16 25 H 0.03 1.15 6.75 -2.39 -0.02 1.14 16 26 H 0.26 14.71 8.31 -92.71 -0.77 13.94 16 27 H 0.02 0.73 6.51 -2.39 -0.02 0.71 16 28 H 0.05 2.40 6.41 -2.39 -0.02 2.39 16 29 H 0.07 2.42 6.36 -2.38 -0.02 2.40 16 30 H 0.04 1.46 6.94 -2.39 -0.02 1.45 16 31 H 0.05 2.07 8.00 -2.39 -0.02 2.05 16 32 H 0.08 1.67 7.85 -2.39 -0.02 1.65 16 33 H 0.10 1.72 8.14 -2.39 -0.02 1.70 16 34 H 0.10 1.39 8.14 -2.39 -0.02 1.37 16 35 H 0.09 1.42 8.06 -2.38 -0.02 1.40 16 36 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 37 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 38 H 0.06 1.24 8.14 -2.39 -0.02 1.23 16 Total: -1.00 -65.84 291.89 1.57 -64.27 By element: Atomic # 1 Polarization: 8.91 SS G_CDS: 1.01 Total: 9.92 kcal Atomic # 6 Polarization: -26.64 SS G_CDS: 4.13 Total: -22.51 kcal Atomic # 7 Polarization: -79.66 SS G_CDS: -4.01 Total: -83.67 kcal Atomic # 8 Polarization: -13.61 SS G_CDS: -1.59 Total: -15.20 kcal Atomic # 14 Polarization: 45.16 SS G_CDS: 2.03 Total: 47.19 kcal Total: -65.84 1.57 -64.27 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000232001480.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.267 kcal (2) G-P(sol) polarization free energy of solvation -65.840 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.107 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.567 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.273 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.539 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds