Wall clock time and date at job start Sun Mar 29 2020 21:51:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53008 * 109.47105 * 2 1 4 4 H 1.09003 * 109.46585 * 54.81331 * 3 2 1 5 5 C 1.50697 * 109.47194 * 174.81257 * 3 2 1 6 6 H 1.07999 * 119.99521 * 120.00122 * 5 3 2 7 7 C 1.37870 * 120.00100 * 300.00020 * 5 3 2 8 8 N 1.31517 * 120.00371 * 359.97438 * 7 5 3 9 9 Si 1.86800 * 120.00021 * 180.02562 * 7 5 3 10 10 H 1.48501 * 109.47281 * 59.99967 * 9 7 5 11 11 H 1.48498 * 109.47484 * 179.97438 * 9 7 5 12 12 H 1.48500 * 109.47248 * 300.00319 * 9 7 5 13 13 N 1.46895 * 109.46860 * 294.81507 * 3 2 1 14 14 C 1.46909 * 111.00089 * 153.85419 * 13 3 2 15 15 C 1.52996 * 109.47274 * 174.86034 * 14 13 3 16 16 H 1.08999 * 110.43656 * 56.09587 * 15 14 13 17 17 C 1.54810 * 110.49025 * 293.54937 * 15 14 13 18 18 C 1.54992 * 102.12176 * 220.42518 * 17 15 14 19 19 O 1.44472 * 103.44826 * 37.02068 * 18 17 15 20 20 C 1.43740 * 106.98659 * 319.94262 * 19 18 17 21 21 H 1.08993 * 109.88471 * 267.09358 * 20 19 18 22 22 C 1.52999 * 109.88006 * 145.93758 * 20 19 18 23 23 H 1.08997 * 109.47285 * 306.21814 * 1 2 3 24 24 H 1.08995 * 109.47232 * 66.22199 * 1 2 3 25 25 H 1.09008 * 109.46708 * 186.22504 * 1 2 3 26 26 H 1.08999 * 109.47190 * 240.00171 * 2 1 3 27 27 H 1.08999 * 109.47358 * 119.99650 * 2 1 3 28 28 H 0.96995 * 120.00298 * 179.97438 * 8 7 5 29 29 H 1.00902 * 111.00331 * 29.90634 * 13 3 2 30 30 H 1.09004 * 109.46489 * 54.86323 * 14 13 3 31 31 H 1.09000 * 109.47167 * 294.86763 * 14 13 3 32 32 H 1.08998 * 110.90536 * 338.63880 * 17 15 14 33 33 H 1.08997 * 110.90790 * 102.21339 * 17 15 14 34 34 H 1.09007 * 110.61590 * 155.54072 * 18 17 15 35 35 H 1.09000 * 110.61952 * 278.53771 * 18 17 15 36 36 H 1.09002 * 109.47221 * 302.17070 * 22 20 19 37 37 H 1.08994 * 109.47107 * 62.17404 * 22 20 19 38 38 H 1.09004 * 109.47343 * 182.17529 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6027 1.9825 0.8399 5 6 3.5415 1.4445 0.1285 6 1 4.1491 1.8883 -0.6463 7 6 4.1394 0.8799 1.2350 8 7 3.3995 0.3399 2.1787 9 14 6.0006 0.8830 1.3945 10 1 6.4951 2.2832 1.3949 11 1 6.3896 0.2209 2.6656 12 1 6.5968 0.1479 0.2502 13 7 1.6552 2.0979 -1.2571 14 6 1.5493 3.5526 -1.0816 15 6 1.2739 4.2110 -2.4349 16 1 0.3788 3.7864 -2.8895 17 6 2.4912 4.0439 -3.3766 18 6 2.5611 5.4298 -4.0671 19 8 2.1970 6.3489 -3.0135 20 6 1.1281 5.7365 -2.2729 21 1 0.1672 6.0614 -2.6717 22 6 1.2359 6.1153 -0.7944 23 1 -0.3634 0.6072 0.8291 24 1 -0.3633 0.4143 -0.9404 25 1 -0.3633 -1.0217 0.1114 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 3.8202 -0.0576 2.9570 29 1 0.7942 1.7136 -1.6165 30 1 2.4837 3.9382 -0.6734 31 1 0.7329 3.7773 -0.3952 32 1 3.3994 3.8469 -2.8070 33 1 2.3129 3.2543 -4.1064 34 1 3.5721 5.6316 -4.4211 35 1 1.8472 5.4856 -4.8889 36 1 2.2069 5.8038 -0.4094 37 1 1.1320 7.1950 -0.6875 38 1 0.4456 5.6168 -0.2330 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000233869786.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:51:31 Heat of formation + Delta-G solvation = -59.496016 kcal Electronic energy + Delta-G solvation = -16649.038653 eV Core-core repulsion = 14104.889505 eV Total energy + Delta-G solvation = -2544.149148 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.51639 -36.32380 -33.58869 -31.83846 -31.20048 -30.21845 -26.91112 -25.56698 -23.82688 -22.40050 -21.83618 -19.65881 -19.04184 -16.41683 -16.26468 -15.49258 -15.11019 -14.72097 -14.39961 -13.90451 -13.61501 -12.96797 -12.72899 -12.28174 -12.06376 -11.91106 -11.75200 -11.47731 -11.14791 -10.93683 -10.83470 -10.67060 -10.60925 -10.51875 -10.16539 -9.94269 -9.65825 -9.63935 -9.32811 -9.04976 -8.32701 -7.18148 -5.95050 -3.99033 3.35235 3.39235 3.42804 4.08305 4.45944 4.78212 5.02355 5.08069 5.31132 5.33473 5.43676 5.58844 5.65010 5.78953 5.82078 5.94133 6.06330 6.08265 6.14596 6.15956 6.29018 6.38968 6.42205 6.44146 6.57016 6.74852 6.83971 7.08438 7.14269 7.21396 7.50907 7.79128 7.93393 8.32957 8.41663 8.78246 9.08605 9.65907 11.10319 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.023973 B = 0.008009 C = 0.006840 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1167.706465 B = 3495.391818 C = 4092.582788 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.126 4.126 3 C 0.220 3.780 4 H 0.001 0.999 5 C -0.491 4.491 6 H 0.060 0.940 7 C 0.055 3.945 8 N -0.897 5.897 9 Si 0.894 3.106 10 H -0.278 1.278 11 H -0.289 1.289 12 H -0.278 1.278 13 N -0.686 5.686 14 C 0.077 3.923 15 C -0.115 4.115 16 H 0.072 0.928 17 C -0.132 4.132 18 C 0.042 3.958 19 O -0.379 6.379 20 C 0.078 3.922 21 H 0.060 0.940 22 C -0.154 4.154 23 H 0.041 0.959 24 H 0.035 0.965 25 H 0.037 0.963 26 H 0.040 0.960 27 H 0.099 0.901 28 H 0.259 0.741 29 H 0.314 0.686 30 H 0.079 0.921 31 H 0.018 0.982 32 H 0.085 0.915 33 H 0.076 0.924 34 H 0.087 0.913 35 H 0.053 0.947 36 H 0.071 0.929 37 H 0.053 0.947 38 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.297 6.649 -8.030 11.694 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.164 4.164 3 C 0.112 3.888 4 H 0.018 0.982 5 C -0.530 4.530 6 H 0.078 0.922 7 C -0.146 4.146 8 N -0.537 5.537 9 Si 0.722 3.278 10 H -0.204 1.204 11 H -0.215 1.215 12 H -0.203 1.203 13 N -0.317 5.317 14 C -0.053 4.053 15 C -0.134 4.134 16 H 0.091 0.909 17 C -0.170 4.170 18 C -0.034 4.034 19 O -0.299 6.299 20 C 0.020 3.980 21 H 0.078 0.922 22 C -0.211 4.211 23 H 0.061 0.939 24 H 0.054 0.946 25 H 0.056 0.944 26 H 0.059 0.941 27 H 0.117 0.883 28 H 0.069 0.931 29 H 0.131 0.869 30 H 0.097 0.903 31 H 0.036 0.964 32 H 0.104 0.896 33 H 0.095 0.905 34 H 0.106 0.894 35 H 0.071 0.929 36 H 0.090 0.910 37 H 0.072 0.928 38 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -4.530 6.783 -8.026 11.443 hybrid contribution 0.004 -0.242 0.597 0.644 sum -4.526 6.541 -7.429 10.884 Atomic orbital electron populations 1.21878 0.99667 0.99686 0.99471 1.21771 0.91157 1.00460 1.03039 1.19130 0.95373 0.89860 0.84396 0.98179 1.21164 0.91242 1.36298 1.04315 0.92190 1.24955 0.98052 0.95702 0.95857 1.69860 1.34774 1.39446 1.09654 0.86627 0.85886 0.78154 0.77110 1.20414 1.21484 1.20336 1.60669 1.36035 1.01973 1.33070 1.21993 1.00371 0.89987 0.92925 1.22571 0.98698 0.94163 0.97992 0.90907 1.23012 0.99467 0.96143 0.98338 1.23604 1.00173 0.89254 0.90416 1.88859 1.53879 1.42588 1.44570 1.22707 0.90185 0.92148 0.92948 0.92185 1.22020 1.03592 1.01154 0.94348 0.93950 0.94647 0.94420 0.94083 0.88300 0.93064 0.86911 0.90297 0.96418 0.89587 0.90540 0.89447 0.92920 0.91032 0.92767 0.91089 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.86 9.63 37.16 0.36 -2.51 16 2 C -0.13 -2.94 5.36 -26.73 -0.14 -3.08 16 3 C 0.22 5.39 2.03 -68.86 -0.14 5.25 16 4 H 0.00 0.02 7.84 -51.93 -0.41 -0.39 16 5 C -0.49 -13.46 8.60 -34.44 -0.30 -13.75 16 6 H 0.06 1.67 7.81 -52.49 -0.41 1.26 16 7 C 0.05 1.51 5.29 -17.82 -0.09 1.41 16 8 N -0.90 -25.50 11.29 55.43 0.63 -24.88 16 9 Si 0.89 21.56 29.54 -169.99 -5.02 16.54 16 10 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 11 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 12 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 13 N -0.69 -14.13 6.08 -107.94 -0.66 -14.79 16 14 C 0.08 1.41 3.57 -3.82 -0.01 1.40 16 15 C -0.12 -1.73 3.28 -89.09 -0.29 -2.03 16 16 H 0.07 1.02 8.14 -51.93 -0.42 0.59 16 17 C -0.13 -1.96 6.52 -24.73 -0.16 -2.12 16 18 C 0.04 0.55 7.72 38.21 0.30 0.85 16 19 O -0.38 -5.92 11.19 -35.23 -0.39 -6.32 16 20 C 0.08 1.12 4.06 -26.15 -0.11 1.01 16 21 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 22 C -0.15 -2.17 8.40 37.16 0.31 -1.86 16 23 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 24 H 0.03 0.60 6.65 -51.93 -0.35 0.26 16 25 H 0.04 0.65 8.14 -51.92 -0.42 0.23 16 26 H 0.04 0.96 8.14 -51.93 -0.42 0.53 16 27 H 0.10 2.61 5.95 -51.93 -0.31 2.30 16 28 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 29 H 0.31 5.93 6.62 -39.29 -0.26 5.67 16 30 H 0.08 1.64 6.67 -51.93 -0.35 1.29 16 31 H 0.02 0.32 6.65 -51.93 -0.35 -0.02 16 32 H 0.09 1.48 7.83 -51.93 -0.41 1.08 16 33 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 34 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 35 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 36 H 0.07 1.12 6.75 -51.93 -0.35 0.77 16 37 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.07 0.95 6.80 -51.93 -0.35 0.59 16 LS Contribution 295.01 15.07 4.45 4.45 Total: -1.00 -28.34 295.01 -7.75 -36.09 By element: Atomic # 1 Polarization: 10.79 SS G_CDS: -6.47 Total: 4.31 kcal Atomic # 6 Polarization: -15.13 SS G_CDS: -0.28 Total: -15.41 kcal Atomic # 7 Polarization: -39.64 SS G_CDS: -0.03 Total: -39.67 kcal Atomic # 8 Polarization: -5.92 SS G_CDS: -0.39 Total: -6.32 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -28.34 -7.75 -36.09 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000233869786.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.406 kcal (2) G-P(sol) polarization free energy of solvation -28.336 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.743 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.753 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.090 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.496 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds