Wall clock time and date at job start Sun Mar 29 2020 21:51:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53008 * 109.47105 * 2 1 4 4 H 1.09003 * 109.46585 * 54.81331 * 3 2 1 5 5 C 1.50697 * 109.47194 * 174.81257 * 3 2 1 6 6 H 1.07999 * 119.99521 * 120.00122 * 5 3 2 7 7 C 1.37870 * 120.00100 * 300.00020 * 5 3 2 8 8 N 1.31517 * 120.00371 * 359.97438 * 7 5 3 9 9 Si 1.86800 * 120.00021 * 180.02562 * 7 5 3 10 10 H 1.48501 * 109.47281 * 59.99967 * 9 7 5 11 11 H 1.48498 * 109.47484 * 179.97438 * 9 7 5 12 12 H 1.48500 * 109.47248 * 300.00319 * 9 7 5 13 13 N 1.46895 * 109.46860 * 294.81507 * 3 2 1 14 14 C 1.46909 * 111.00089 * 153.85419 * 13 3 2 15 15 C 1.52996 * 109.47274 * 174.86034 * 14 13 3 16 16 H 1.08999 * 110.43656 * 56.09587 * 15 14 13 17 17 C 1.54810 * 110.49025 * 293.54937 * 15 14 13 18 18 C 1.54992 * 102.12176 * 220.42518 * 17 15 14 19 19 O 1.44472 * 103.44826 * 37.02068 * 18 17 15 20 20 C 1.43740 * 106.98659 * 319.94262 * 19 18 17 21 21 H 1.08993 * 109.88471 * 267.09358 * 20 19 18 22 22 C 1.52999 * 109.88006 * 145.93758 * 20 19 18 23 23 H 1.08997 * 109.47285 * 306.21814 * 1 2 3 24 24 H 1.08995 * 109.47232 * 66.22199 * 1 2 3 25 25 H 1.09008 * 109.46708 * 186.22504 * 1 2 3 26 26 H 1.08999 * 109.47190 * 240.00171 * 2 1 3 27 27 H 1.08999 * 109.47358 * 119.99650 * 2 1 3 28 28 H 0.96995 * 120.00298 * 179.97438 * 8 7 5 29 29 H 1.00902 * 111.00331 * 29.90634 * 13 3 2 30 30 H 1.09004 * 109.46489 * 54.86323 * 14 13 3 31 31 H 1.09000 * 109.47167 * 294.86763 * 14 13 3 32 32 H 1.08998 * 110.90536 * 338.63880 * 17 15 14 33 33 H 1.08997 * 110.90790 * 102.21339 * 17 15 14 34 34 H 1.09007 * 110.61590 * 155.54072 * 18 17 15 35 35 H 1.09000 * 110.61952 * 278.53771 * 18 17 15 36 36 H 1.09002 * 109.47221 * 302.17070 * 22 20 19 37 37 H 1.08994 * 109.47107 * 62.17404 * 22 20 19 38 38 H 1.09004 * 109.47343 * 182.17529 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6027 1.9825 0.8399 5 6 3.5415 1.4445 0.1285 6 1 4.1491 1.8883 -0.6463 7 6 4.1394 0.8799 1.2350 8 7 3.3995 0.3399 2.1787 9 14 6.0006 0.8830 1.3945 10 1 6.4951 2.2832 1.3949 11 1 6.3896 0.2209 2.6656 12 1 6.5968 0.1479 0.2502 13 7 1.6552 2.0979 -1.2571 14 6 1.5493 3.5526 -1.0816 15 6 1.2739 4.2110 -2.4349 16 1 0.3788 3.7864 -2.8895 17 6 2.4912 4.0439 -3.3766 18 6 2.5611 5.4298 -4.0671 19 8 2.1970 6.3489 -3.0135 20 6 1.1281 5.7365 -2.2729 21 1 0.1672 6.0614 -2.6717 22 6 1.2359 6.1153 -0.7944 23 1 -0.3634 0.6072 0.8291 24 1 -0.3633 0.4143 -0.9404 25 1 -0.3633 -1.0217 0.1114 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 3.8202 -0.0576 2.9570 29 1 0.7942 1.7136 -1.6165 30 1 2.4837 3.9382 -0.6734 31 1 0.7329 3.7773 -0.3952 32 1 3.3994 3.8469 -2.8070 33 1 2.3129 3.2543 -4.1064 34 1 3.5721 5.6316 -4.4211 35 1 1.8472 5.4856 -4.8889 36 1 2.2069 5.8038 -0.4094 37 1 1.1320 7.1950 -0.6875 38 1 0.4456 5.6168 -0.2330 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000233869786.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:51:30 Heat of formation + Delta-G solvation = -77.900727 kcal Electronic energy + Delta-G solvation = -16649.836741 eV Core-core repulsion = 14104.889505 eV Total energy + Delta-G solvation = -2544.947236 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.70528 -38.06621 -35.15961 -33.74028 -32.37580 -31.73518 -28.72652 -26.94854 -25.39262 -24.12497 -22.96885 -21.49416 -20.37690 -18.36232 -17.62520 -16.69866 -16.67837 -16.31194 -15.87562 -15.64689 -15.02157 -14.61905 -14.31617 -13.64661 -13.49231 -13.36468 -13.12528 -12.94782 -12.89910 -12.75606 -12.53961 -12.21013 -11.98748 -11.92023 -11.72226 -11.51757 -11.49246 -11.18874 -11.00816 -10.51942 -10.42404 -8.94479 -8.06516 -6.18063 1.40588 1.41354 1.49186 2.43241 2.99137 3.18126 3.46368 3.78781 3.89456 4.19246 4.22803 4.35142 4.48082 4.50439 4.57966 4.60475 4.66256 4.68737 4.76572 4.82170 4.92859 4.99350 5.11084 5.15929 5.22577 5.26248 5.32436 5.37539 5.42440 5.61006 5.75666 5.91115 6.05005 6.37344 6.53339 6.95531 7.04802 7.50860 8.96294 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.023973 B = 0.008009 C = 0.006840 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1167.706465 B = 3495.391818 C = 4092.582788 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.121 4.121 3 C 0.226 3.774 4 H -0.033 1.033 5 C -0.509 4.509 6 H 0.047 0.953 7 C 0.009 3.991 8 N -0.920 5.920 9 Si 0.951 3.049 10 H -0.277 1.277 11 H -0.283 1.283 12 H -0.273 1.273 13 N -0.684 5.684 14 C 0.083 3.917 15 C -0.109 4.109 16 H 0.095 0.905 17 C -0.133 4.133 18 C 0.045 3.955 19 O -0.400 6.400 20 C 0.079 3.921 21 H 0.087 0.913 22 C -0.154 4.154 23 H 0.035 0.965 24 H 0.060 0.940 25 H 0.056 0.944 26 H 0.037 0.963 27 H 0.066 0.934 28 H 0.260 0.740 29 H 0.328 0.672 30 H 0.045 0.955 31 H 0.021 0.979 32 H 0.052 0.948 33 H 0.088 0.912 34 H 0.097 0.903 35 H 0.080 0.920 36 H 0.044 0.956 37 H 0.067 0.933 38 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.189 7.068 -9.569 13.410 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.160 4.160 3 C 0.118 3.882 4 H -0.016 1.016 5 C -0.548 4.548 6 H 0.065 0.935 7 C -0.189 4.189 8 N -0.560 5.560 9 Si 0.778 3.222 10 H -0.202 1.202 11 H -0.209 1.209 12 H -0.198 1.198 13 N -0.316 5.316 14 C -0.046 4.046 15 C -0.128 4.128 16 H 0.113 0.887 17 C -0.170 4.170 18 C -0.031 4.031 19 O -0.321 6.321 20 C 0.021 3.979 21 H 0.104 0.896 22 C -0.211 4.211 23 H 0.054 0.946 24 H 0.079 0.921 25 H 0.075 0.925 26 H 0.055 0.945 27 H 0.084 0.916 28 H 0.069 0.931 29 H 0.146 0.854 30 H 0.064 0.936 31 H 0.039 0.961 32 H 0.071 0.929 33 H 0.106 0.894 34 H 0.115 0.885 35 H 0.098 0.902 36 H 0.063 0.937 37 H 0.086 0.914 38 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -5.431 7.207 -9.581 13.161 hybrid contribution 0.281 -0.352 1.071 1.162 sum -5.150 6.855 -8.509 12.080 Atomic orbital electron populations 1.21743 0.96169 1.01095 1.00578 1.21593 0.94297 0.98950 1.01156 1.18894 0.93819 0.90635 0.84867 1.01587 1.21432 0.92946 1.36231 1.04166 0.93488 1.25653 1.02092 0.95475 0.95647 1.69987 1.36213 1.39881 1.09931 0.85716 0.81121 0.78124 0.77280 1.20237 1.20854 1.19789 1.60530 1.36984 1.03180 1.30907 1.21912 0.98837 0.88650 0.95217 1.22533 0.99652 0.94791 0.95830 0.88656 1.22964 0.97839 0.97887 0.98351 1.23728 1.01678 0.87373 0.90290 1.88840 1.54440 1.43357 1.45414 1.22793 0.91031 0.91244 0.92818 0.89552 1.22008 1.02274 1.02096 0.94712 0.94588 0.92105 0.92495 0.94461 0.91581 0.93101 0.85383 0.93608 0.96058 0.92938 0.89371 0.88468 0.90223 0.93658 0.91429 0.90520 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.08 9.63 71.98 0.69 -4.39 16 2 C -0.12 -5.69 5.36 30.60 0.16 -5.52 16 3 C 0.23 11.32 2.03 44.17 0.09 11.41 16 4 H -0.03 -1.87 7.84 -2.39 -0.02 -1.89 16 5 C -0.51 -28.61 8.60 25.60 0.22 -28.39 16 6 H 0.05 2.70 7.81 -2.91 -0.02 2.68 16 7 C 0.01 0.53 5.29 84.65 0.45 0.97 16 8 N -0.92 -53.39 11.29 21.45 0.24 -53.15 16 9 Si 0.95 44.85 29.54 68.60 2.03 46.88 16 10 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 11 H -0.28 -13.00 7.11 99.48 0.71 -12.29 16 12 H -0.27 -12.55 7.11 99.48 0.71 -11.85 16 13 N -0.68 -28.01 6.08 -495.43 -3.01 -31.02 16 14 C 0.08 3.06 3.57 86.30 0.31 3.36 16 15 C -0.11 -3.09 3.28 -9.80 -0.03 -3.13 16 16 H 0.10 2.32 8.14 -2.39 -0.02 2.30 16 17 C -0.13 -3.77 6.52 31.89 0.21 -3.56 16 18 C 0.05 1.09 7.72 72.66 0.56 1.65 16 19 O -0.40 -11.75 11.19 -148.98 -1.67 -13.42 16 20 C 0.08 2.10 4.06 30.97 0.13 2.22 16 21 H 0.09 1.90 8.14 -2.39 -0.02 1.88 16 22 C -0.15 -4.22 8.40 71.98 0.60 -3.62 16 23 H 0.03 1.35 8.14 -2.39 -0.02 1.33 16 24 H 0.06 1.91 6.65 -2.39 -0.02 1.89 16 25 H 0.06 1.86 8.14 -2.38 -0.02 1.84 16 26 H 0.04 1.73 8.14 -2.39 -0.02 1.71 16 27 H 0.07 3.55 5.95 -2.39 -0.01 3.54 16 28 H 0.26 14.44 8.31 -92.71 -0.77 13.67 16 29 H 0.33 11.80 6.62 -89.69 -0.59 11.20 16 30 H 0.05 1.98 6.67 -2.38 -0.02 1.96 16 31 H 0.02 0.77 6.65 -2.39 -0.02 0.75 16 32 H 0.05 1.84 7.83 -2.39 -0.02 1.82 16 33 H 0.09 2.27 8.14 -2.39 -0.02 2.25 16 34 H 0.10 2.12 8.14 -2.38 -0.02 2.10 16 35 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 36 H 0.04 1.46 6.75 -2.39 -0.02 1.45 16 37 H 0.07 1.64 8.14 -2.39 -0.02 1.63 16 38 H 0.08 1.98 6.80 -2.38 -0.02 1.96 16 Total: -1.00 -61.85 295.01 1.41 -60.44 By element: Atomic # 1 Polarization: 18.82 SS G_CDS: 0.43 Total: 19.25 kcal Atomic # 6 Polarization: -32.37 SS G_CDS: 3.39 Total: -28.98 kcal Atomic # 7 Polarization: -81.40 SS G_CDS: -2.77 Total: -84.17 kcal Atomic # 8 Polarization: -11.75 SS G_CDS: -1.67 Total: -13.42 kcal Atomic # 14 Polarization: 44.85 SS G_CDS: 2.03 Total: 46.88 kcal Total: -61.85 1.41 -60.44 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000233869786.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.461 kcal (2) G-P(sol) polarization free energy of solvation -61.848 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.308 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.408 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.440 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.901 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds