Wall clock time and date at job start Sun Mar 29 2020 21:52:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52996 * 109.47686 * 2 1 4 4 H 1.09005 * 109.46589 * 305.45318 * 3 2 1 5 5 C 1.50696 * 109.47246 * 185.45579 * 3 2 1 6 6 H 1.08004 * 120.00103 * 239.99885 * 5 3 2 7 7 C 1.37878 * 120.00165 * 59.72395 * 5 3 2 8 8 N 1.31513 * 119.99928 * 0.27262 * 7 5 3 9 9 Si 1.86801 * 120.00142 * 180.27465 * 7 5 3 10 10 H 1.48497 * 109.47104 * 359.97438 * 9 7 5 11 11 H 1.48505 * 109.46882 * 119.99932 * 9 7 5 12 12 H 1.48499 * 109.47290 * 239.99616 * 9 7 5 13 13 N 1.46896 * 109.47426 * 65.45136 * 3 2 1 14 14 C 1.46892 * 111.00180 * 256.95320 * 13 3 2 15 15 H 1.08992 * 110.02135 * 35.60349 * 14 13 3 16 16 C 1.54269 * 110.02882 * 274.21101 * 14 13 3 17 17 C 1.54967 * 104.16030 * 217.13624 * 16 14 13 18 18 C 1.54889 * 102.77793 * 37.89141 * 17 16 14 19 19 H 1.09005 * 110.48597 * 80.75770 * 18 17 16 20 20 O 1.42892 * 110.48888 * 203.40340 * 18 17 16 21 21 C 1.42902 * 114.00398 * 264.77441 * 20 18 17 22 22 C 1.53879 * 110.03189 * 157.00045 * 14 13 3 23 23 H 1.08991 * 109.47692 * 181.17481 * 1 2 3 24 24 H 1.09001 * 109.46804 * 301.17492 * 1 2 3 25 25 H 1.09000 * 109.47187 * 61.16616 * 1 2 3 26 26 H 1.09007 * 109.46950 * 239.99221 * 2 1 3 27 27 H 1.09003 * 109.46848 * 120.00409 * 2 1 3 28 28 H 0.97005 * 120.00113 * 179.97438 * 8 7 5 29 29 H 1.00910 * 110.99680 * 20.90587 * 13 3 2 30 30 H 1.08999 * 110.49200 * 335.78589 * 16 14 13 31 31 H 1.09007 * 110.48396 * 98.43168 * 16 14 13 32 32 H 1.08998 * 110.71995 * 279.57712 * 17 16 14 33 33 H 1.09007 * 110.76615 * 156.22342 * 17 16 14 34 34 H 1.09001 * 109.47327 * 300.00240 * 21 20 18 35 35 H 1.09004 * 109.46806 * 59.99759 * 21 20 18 36 36 H 1.08992 * 109.47341 * 180.02562 * 21 20 18 37 37 H 1.09001 * 110.02774 * 238.56604 * 22 14 13 38 38 H 1.08998 * 110.03124 * 359.97438 * 22 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.5992 1.9836 -0.8372 5 6 3.5410 1.4444 -0.1351 6 1 4.1522 1.8869 0.6377 7 6 4.1343 0.8764 -1.2425 8 7 3.3902 0.3375 -2.1834 9 14 5.9951 0.8721 -1.4062 10 1 6.5978 1.5357 -0.2224 11 1 6.4814 -0.5286 -1.4902 12 1 6.3855 1.6061 -2.6367 13 7 1.6609 2.0960 1.2597 14 6 0.5171 2.9962 1.0623 15 1 -0.1659 2.5754 0.3245 16 6 1.0097 4.3820 0.5966 17 6 0.0606 5.3801 1.3069 18 6 -0.1460 4.7269 2.6960 19 1 0.6979 4.9466 3.3501 20 8 -1.3672 5.1787 3.2845 21 6 -1.2086 6.2825 4.1781 22 6 -0.2176 3.2153 2.3965 23 1 -0.3634 -1.0273 0.0211 24 1 -0.3633 0.5320 0.8793 25 1 -0.3633 0.4956 -0.9002 26 1 1.8933 -0.5140 -0.8900 27 1 1.8933 -0.5139 0.8900 28 1 3.8075 -0.0619 -2.9627 29 1 1.4643 1.4133 1.9764 30 1 2.0403 4.5462 0.9111 31 1 0.9209 4.4744 -0.4859 32 1 -0.8861 5.4589 0.7725 33 1 0.5321 6.3579 1.4060 34 1 -0.5448 5.9968 4.9941 35 1 -0.7793 7.1273 3.6393 36 1 -2.1804 6.5650 4.5827 37 1 -1.2576 2.9016 2.3058 38 1 0.2743 2.6533 3.1903 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000234007281.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:52:15 Heat of formation + Delta-G solvation = -61.182970 kcal Electronic energy + Delta-G solvation = -16497.936838 eV Core-core repulsion = 13953.714539 eV Total energy + Delta-G solvation = -2544.222299 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -38.91349 -36.87335 -34.71209 -31.99455 -30.24879 -28.49966 -27.40291 -26.02794 -24.92778 -22.60249 -20.59416 -19.61798 -19.42691 -16.76180 -16.20581 -15.55694 -15.01101 -14.80978 -14.52139 -13.68059 -13.55470 -13.25750 -12.77842 -12.71164 -12.14756 -11.61393 -11.57945 -11.28073 -11.15280 -10.98214 -10.77006 -10.66077 -10.56622 -10.37346 -10.27024 -9.97336 -9.70734 -9.67578 -9.35729 -8.96782 -8.29065 -7.14200 -5.93232 -3.95973 3.33780 3.41746 3.47085 3.86098 4.47889 4.90791 4.92265 5.15305 5.27365 5.32638 5.36308 5.49238 5.56777 5.74389 5.81157 5.94699 6.00485 6.09482 6.15576 6.16416 6.24762 6.36012 6.42790 6.43874 6.66313 6.81735 6.87137 7.02407 7.24659 7.33499 7.48488 7.80209 7.96646 8.37219 8.63822 8.67288 9.12381 9.68953 11.12743 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.036576 B = 0.006422 C = 0.005820 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 765.336035 B = 4358.738756 C = 4809.678809 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.147 4.147 3 C 0.217 3.783 4 H 0.029 0.971 5 C -0.487 4.487 6 H 0.062 0.938 7 C 0.053 3.947 8 N -0.898 5.898 9 Si 0.894 3.106 10 H -0.273 1.273 11 H -0.287 1.287 12 H -0.286 1.286 13 N -0.678 5.678 14 C 0.087 3.913 15 H 0.043 0.957 16 C -0.108 4.108 17 C -0.143 4.143 18 C 0.086 3.914 19 H 0.067 0.933 20 O -0.387 6.387 21 C 0.032 3.968 22 C -0.121 4.121 23 H 0.034 0.966 24 H 0.034 0.966 25 H 0.043 0.957 26 H 0.100 0.900 27 H 0.035 0.965 28 H 0.258 0.742 29 H 0.322 0.678 30 H 0.080 0.920 31 H 0.061 0.939 32 H 0.070 0.930 33 H 0.061 0.939 34 H 0.039 0.961 35 H 0.039 0.961 36 H 0.080 0.920 37 H 0.069 0.931 38 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.500 7.452 8.339 13.466 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.187 4.187 3 C 0.109 3.891 4 H 0.046 0.954 5 C -0.526 4.526 6 H 0.081 0.919 7 C -0.147 4.147 8 N -0.539 5.539 9 Si 0.722 3.278 10 H -0.198 1.198 11 H -0.213 1.213 12 H -0.213 1.213 13 N -0.308 5.308 14 C -0.024 4.024 15 H 0.061 0.939 16 C -0.146 4.146 17 C -0.182 4.182 18 C 0.028 3.972 19 H 0.086 0.914 20 O -0.306 6.306 21 C -0.065 4.065 22 C -0.159 4.159 23 H 0.053 0.947 24 H 0.054 0.946 25 H 0.062 0.938 26 H 0.118 0.882 27 H 0.053 0.947 28 H 0.068 0.932 29 H 0.140 0.860 30 H 0.099 0.901 31 H 0.080 0.920 32 H 0.089 0.911 33 H 0.079 0.921 34 H 0.057 0.943 35 H 0.057 0.943 36 H 0.099 0.901 37 H 0.088 0.912 38 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -7.177 7.771 8.060 13.299 hybrid contribution 0.484 -0.577 -0.252 0.794 sum -6.693 7.194 7.808 12.550 Atomic orbital electron populations 1.21900 0.99526 0.99327 0.99865 1.22220 0.91509 1.01994 1.02944 1.19227 0.95370 0.88737 0.85730 0.95358 1.21289 0.91319 1.35408 1.04616 0.91944 1.24965 0.98016 0.95759 0.95968 1.69883 1.34531 1.39731 1.09734 0.86504 0.85951 0.77448 0.77856 1.19807 1.21290 1.21276 1.60970 1.34879 1.23708 1.11290 1.22071 0.91599 0.94553 0.94152 0.93947 1.22342 0.99587 0.93236 0.99468 1.22978 1.00291 0.98623 0.96271 1.23044 0.85825 0.94646 0.93647 0.91444 1.87898 1.31631 1.49628 1.61476 1.22721 1.01901 0.89219 0.92617 1.22413 1.00904 0.94230 0.98381 0.94721 0.94646 0.93810 0.88210 0.94664 0.93234 0.85997 0.90092 0.91984 0.91143 0.92065 0.94253 0.94267 0.90134 0.91237 0.90950 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.93 8.91 37.16 0.33 -2.60 16 2 C -0.15 -3.44 5.08 -26.73 -0.14 -3.58 16 3 C 0.22 5.32 2.04 -68.87 -0.14 5.18 16 4 H 0.03 0.77 7.50 -51.93 -0.39 0.38 16 5 C -0.49 -13.37 8.84 -34.44 -0.30 -13.68 16 6 H 0.06 1.75 7.81 -52.48 -0.41 1.34 16 7 C 0.05 1.46 5.29 -17.82 -0.09 1.36 16 8 N -0.90 -25.59 11.28 55.43 0.63 -24.96 16 9 Si 0.89 21.52 29.54 -169.99 -5.02 16.50 16 10 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 11 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 12 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 13 N -0.68 -14.05 5.81 -99.79 -0.58 -14.63 16 14 C 0.09 1.56 2.22 -66.60 -0.15 1.42 16 15 H 0.04 0.81 6.46 -51.93 -0.34 0.48 16 16 C -0.11 -1.86 6.44 -25.03 -0.16 -2.02 16 17 C -0.14 -2.05 6.62 -24.70 -0.16 -2.22 16 18 C 0.09 1.22 3.35 -25.07 -0.08 1.14 16 19 H 0.07 0.92 7.82 -51.93 -0.41 0.51 16 20 O -0.39 -5.40 10.41 -35.23 -0.37 -5.77 16 21 C 0.03 0.33 10.85 101.05 1.10 1.43 16 22 C -0.12 -1.86 6.24 -25.61 -0.16 -2.02 16 23 H 0.03 0.62 8.14 -51.93 -0.42 0.19 16 24 H 0.03 0.63 6.49 -51.93 -0.34 0.30 16 25 H 0.04 0.87 8.14 -51.93 -0.42 0.45 16 26 H 0.10 2.65 5.93 -51.92 -0.31 2.34 16 27 H 0.03 0.80 8.03 -51.93 -0.42 0.39 16 28 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 29 H 0.32 6.34 7.24 -39.29 -0.28 6.05 16 30 H 0.08 1.51 8.05 -51.93 -0.42 1.09 16 31 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 32 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 33 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 34 H 0.04 0.37 8.11 -51.93 -0.42 -0.05 16 35 H 0.04 0.37 8.14 -51.93 -0.42 -0.05 16 36 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.07 1.05 8.07 -51.93 -0.42 0.63 16 38 H 0.07 1.08 7.50 -51.93 -0.39 0.69 16 LS Contribution 298.55 15.07 4.50 4.50 Total: -1.00 -28.28 298.55 -7.44 -35.71 By element: Atomic # 1 Polarization: 10.86 SS G_CDS: -6.63 Total: 4.23 kcal Atomic # 6 Polarization: -15.62 SS G_CDS: 0.04 Total: -15.58 kcal Atomic # 7 Polarization: -39.64 SS G_CDS: 0.05 Total: -39.59 kcal Atomic # 8 Polarization: -5.40 SS G_CDS: -0.37 Total: -5.77 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.50 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -28.28 -7.44 -35.71 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000234007281.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.469 kcal (2) G-P(sol) polarization free energy of solvation -28.279 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.747 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.436 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.714 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.183 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds