Wall clock time and date at job start Sun Mar 29 2020 21:52:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52996 * 109.47686 * 2 1 4 4 H 1.09005 * 109.46589 * 305.45318 * 3 2 1 5 5 C 1.50696 * 109.47246 * 185.45579 * 3 2 1 6 6 H 1.08004 * 120.00103 * 239.99885 * 5 3 2 7 7 C 1.37878 * 120.00165 * 59.72395 * 5 3 2 8 8 N 1.31513 * 119.99928 * 0.27262 * 7 5 3 9 9 Si 1.86801 * 120.00142 * 180.27465 * 7 5 3 10 10 H 1.48497 * 109.47104 * 359.97438 * 9 7 5 11 11 H 1.48505 * 109.46882 * 119.99932 * 9 7 5 12 12 H 1.48499 * 109.47290 * 239.99616 * 9 7 5 13 13 N 1.46896 * 109.47426 * 65.45136 * 3 2 1 14 14 C 1.46892 * 111.00180 * 256.95320 * 13 3 2 15 15 H 1.08992 * 110.02135 * 35.60349 * 14 13 3 16 16 C 1.54269 * 110.02882 * 274.21101 * 14 13 3 17 17 C 1.54967 * 104.16030 * 217.13624 * 16 14 13 18 18 C 1.54889 * 102.77793 * 37.89141 * 17 16 14 19 19 H 1.09005 * 110.48597 * 80.75770 * 18 17 16 20 20 O 1.42892 * 110.48888 * 203.40340 * 18 17 16 21 21 C 1.42902 * 114.00398 * 264.77441 * 20 18 17 22 22 C 1.53879 * 110.03189 * 157.00045 * 14 13 3 23 23 H 1.08991 * 109.47692 * 181.17481 * 1 2 3 24 24 H 1.09001 * 109.46804 * 301.17492 * 1 2 3 25 25 H 1.09000 * 109.47187 * 61.16616 * 1 2 3 26 26 H 1.09007 * 109.46950 * 239.99221 * 2 1 3 27 27 H 1.09003 * 109.46848 * 120.00409 * 2 1 3 28 28 H 0.97005 * 120.00113 * 179.97438 * 8 7 5 29 29 H 1.00910 * 110.99680 * 20.90587 * 13 3 2 30 30 H 1.08999 * 110.49200 * 335.78589 * 16 14 13 31 31 H 1.09007 * 110.48396 * 98.43168 * 16 14 13 32 32 H 1.08998 * 110.71995 * 279.57712 * 17 16 14 33 33 H 1.09007 * 110.76615 * 156.22342 * 17 16 14 34 34 H 1.09001 * 109.47327 * 300.00240 * 21 20 18 35 35 H 1.09004 * 109.46806 * 59.99759 * 21 20 18 36 36 H 1.08992 * 109.47341 * 180.02562 * 21 20 18 37 37 H 1.09001 * 110.02774 * 238.56604 * 22 14 13 38 38 H 1.08998 * 110.03124 * 359.97438 * 22 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.5992 1.9836 -0.8372 5 6 3.5410 1.4444 -0.1351 6 1 4.1522 1.8869 0.6377 7 6 4.1343 0.8764 -1.2425 8 7 3.3902 0.3375 -2.1834 9 14 5.9951 0.8721 -1.4062 10 1 6.5978 1.5357 -0.2224 11 1 6.4814 -0.5286 -1.4902 12 1 6.3855 1.6061 -2.6367 13 7 1.6609 2.0960 1.2597 14 6 0.5171 2.9962 1.0623 15 1 -0.1659 2.5754 0.3245 16 6 1.0097 4.3820 0.5966 17 6 0.0606 5.3801 1.3069 18 6 -0.1460 4.7269 2.6960 19 1 0.6979 4.9466 3.3501 20 8 -1.3672 5.1787 3.2845 21 6 -1.2086 6.2825 4.1781 22 6 -0.2176 3.2153 2.3965 23 1 -0.3634 -1.0273 0.0211 24 1 -0.3633 0.5320 0.8793 25 1 -0.3633 0.4956 -0.9002 26 1 1.8933 -0.5140 -0.8900 27 1 1.8933 -0.5139 0.8900 28 1 3.8075 -0.0619 -2.9627 29 1 1.4643 1.4133 1.9764 30 1 2.0403 4.5462 0.9111 31 1 0.9209 4.4744 -0.4859 32 1 -0.8861 5.4589 0.7725 33 1 0.5321 6.3579 1.4060 34 1 -0.5448 5.9968 4.9941 35 1 -0.7793 7.1273 3.6393 36 1 -2.1804 6.5650 4.5827 37 1 -1.2576 2.9016 2.3058 38 1 0.2743 2.6533 3.1903 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000234007281.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:52:15 Heat of formation + Delta-G solvation = -79.120202 kcal Electronic energy + Delta-G solvation = -16498.714655 eV Core-core repulsion = 13953.714539 eV Total energy + Delta-G solvation = -2545.000116 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.16529 -38.29395 -36.25656 -33.97329 -31.87230 -29.78878 -28.96692 -27.24431 -26.38929 -24.44390 -21.92450 -21.35417 -20.85846 -18.32910 -17.79375 -16.82501 -16.62570 -16.29537 -15.79357 -15.29968 -14.97903 -14.79061 -14.30775 -14.14678 -13.49956 -13.37210 -13.09584 -12.88164 -12.62854 -12.42743 -12.31049 -12.14701 -12.10592 -11.91002 -11.71489 -11.61070 -11.51065 -11.42799 -10.91585 -10.42843 -10.39511 -8.87544 -8.03969 -6.14631 1.41926 1.44194 1.56033 2.46509 2.87427 3.22081 3.64547 3.69547 3.72581 4.23533 4.42404 4.45858 4.47706 4.52996 4.56172 4.58779 4.64791 4.69877 4.76785 4.86739 4.90938 4.96895 5.03868 5.10821 5.11832 5.20717 5.27031 5.40619 5.43289 5.62320 5.78050 5.92259 6.34891 6.39381 6.74001 6.94829 7.01146 7.54913 8.99889 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.036576 B = 0.006422 C = 0.005820 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 765.336035 B = 4358.738756 C = 4809.678809 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.142 4.142 3 C 0.226 3.774 4 H -0.006 1.006 5 C -0.506 4.506 6 H 0.052 0.948 7 C 0.007 3.993 8 N -0.923 5.923 9 Si 0.955 3.045 10 H -0.270 1.270 11 H -0.282 1.282 12 H -0.284 1.284 13 N -0.678 5.678 14 C 0.086 3.914 15 H 0.029 0.971 16 C -0.109 4.109 17 C -0.132 4.132 18 C 0.092 3.908 19 H 0.076 0.924 20 O -0.403 6.403 21 C 0.024 3.976 22 C -0.114 4.114 23 H 0.054 0.946 24 H 0.052 0.948 25 H 0.033 0.967 26 H 0.067 0.933 27 H 0.036 0.964 28 H 0.259 0.741 29 H 0.330 0.670 30 H 0.064 0.936 31 H 0.046 0.954 32 H 0.072 0.928 33 H 0.079 0.921 34 H 0.048 0.952 35 H 0.047 0.953 36 H 0.098 0.902 37 H 0.074 0.926 38 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.902 8.171 9.759 14.982 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.182 4.182 3 C 0.117 3.883 4 H 0.012 0.988 5 C -0.545 4.545 6 H 0.070 0.930 7 C -0.190 4.190 8 N -0.564 5.564 9 Si 0.782 3.218 10 H -0.194 1.194 11 H -0.207 1.207 12 H -0.210 1.210 13 N -0.309 5.309 14 C -0.025 4.025 15 H 0.047 0.953 16 C -0.147 4.147 17 C -0.170 4.170 18 C 0.034 3.966 19 H 0.094 0.906 20 O -0.323 6.323 21 C -0.072 4.072 22 C -0.152 4.152 23 H 0.073 0.927 24 H 0.071 0.929 25 H 0.053 0.947 26 H 0.085 0.915 27 H 0.055 0.945 28 H 0.068 0.932 29 H 0.148 0.852 30 H 0.083 0.917 31 H 0.065 0.935 32 H 0.091 0.909 33 H 0.097 0.903 34 H 0.067 0.933 35 H 0.066 0.934 36 H 0.117 0.883 37 H 0.093 0.907 38 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -7.590 8.501 9.499 14.836 hybrid contribution 0.581 -0.762 -0.676 1.173 sum -7.010 7.738 8.823 13.670 Atomic orbital electron populations 1.21752 0.96592 1.00817 1.00238 1.22047 0.94130 1.00660 1.01324 1.18938 0.93839 0.89287 0.86216 0.98766 1.21580 0.92957 1.35441 1.04535 0.93004 1.25683 1.02165 0.95459 0.95709 1.70015 1.36105 1.40185 1.10065 0.85547 0.80979 0.77530 0.77771 1.19417 1.20748 1.20984 1.60854 1.36652 1.23700 1.09725 1.22106 0.90662 0.94028 0.95686 0.95255 1.22278 0.99518 0.94042 0.98884 1.22898 0.99546 0.98558 0.96042 1.22909 0.86491 0.93550 0.93643 0.90602 1.87869 1.31264 1.50943 1.62178 1.22964 1.03428 0.88385 0.92420 1.22312 1.00656 0.95634 0.96638 0.92697 0.92861 0.94732 0.91486 0.94485 0.93232 0.85207 0.91691 0.93518 0.90947 0.90253 0.93305 0.93390 0.88345 0.90736 0.90309 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.27 8.91 71.98 0.64 -4.63 16 2 C -0.14 -6.70 5.08 30.59 0.16 -6.55 16 3 C 0.23 11.31 2.04 44.17 0.09 11.40 16 4 H -0.01 -0.31 7.50 -2.38 -0.02 -0.33 16 5 C -0.51 -28.27 8.84 25.60 0.23 -28.04 16 6 H 0.05 2.94 7.81 -2.91 -0.02 2.92 16 7 C 0.01 0.41 5.29 84.65 0.45 0.86 16 8 N -0.92 -53.59 11.28 21.45 0.24 -53.35 16 9 Si 0.96 44.49 29.54 68.60 2.03 46.52 16 10 H -0.27 -12.29 7.11 99.48 0.71 -11.59 16 11 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 12 H -0.28 -13.02 7.11 99.48 0.71 -12.32 16 13 N -0.68 -28.13 5.81 -469.63 -2.73 -30.85 16 14 C 0.09 3.04 2.22 45.64 0.10 3.15 16 15 H 0.03 1.13 6.46 -2.39 -0.02 1.11 16 16 C -0.11 -3.75 6.44 31.70 0.20 -3.55 16 17 C -0.13 -3.56 6.62 31.91 0.21 -3.35 16 18 C 0.09 2.40 3.35 31.67 0.11 2.51 16 19 H 0.08 1.86 7.82 -2.38 -0.02 1.84 16 20 O -0.40 -10.14 10.41 -148.98 -1.55 -11.69 16 21 C 0.02 0.42 10.85 113.37 1.23 1.65 16 22 C -0.11 -3.30 6.24 31.32 0.20 -3.11 16 23 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 24 H 0.05 1.84 6.49 -2.39 -0.02 1.83 16 25 H 0.03 1.37 8.14 -2.39 -0.02 1.35 16 26 H 0.07 3.63 5.93 -2.38 -0.01 3.62 16 27 H 0.04 1.69 8.03 -2.39 -0.02 1.67 16 28 H 0.26 14.32 8.31 -92.70 -0.77 13.55 16 29 H 0.33 12.69 7.24 -89.69 -0.65 12.04 16 30 H 0.06 2.43 8.05 -2.39 -0.02 2.41 16 31 H 0.05 1.71 8.14 -2.38 -0.02 1.69 16 32 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 33 H 0.08 1.85 8.14 -2.38 -0.02 1.83 16 34 H 0.05 0.76 8.11 -2.39 -0.02 0.74 16 35 H 0.05 0.75 8.14 -2.38 -0.02 0.73 16 36 H 0.10 1.35 8.14 -2.39 -0.02 1.33 16 37 H 0.07 2.09 8.07 -2.39 -0.02 2.07 16 38 H 0.08 2.18 7.50 -2.39 -0.02 2.16 16 Total: -1.00 -60.67 298.55 1.96 -58.70 By element: Atomic # 1 Polarization: 19.97 SS G_CDS: 0.37 Total: 20.34 kcal Atomic # 6 Polarization: -33.28 SS G_CDS: 3.61 Total: -29.67 kcal Atomic # 7 Polarization: -81.71 SS G_CDS: -2.49 Total: -84.20 kcal Atomic # 8 Polarization: -10.14 SS G_CDS: -1.55 Total: -11.69 kcal Atomic # 14 Polarization: 44.49 SS G_CDS: 2.03 Total: 46.52 kcal Total: -60.67 1.96 -58.70 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000234007281.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.417 kcal (2) G-P(sol) polarization free energy of solvation -60.667 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.084 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.964 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.703 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.120 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds