Wall clock time and date at job start Sun Mar 29 2020 21:51:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53006 * 109.46972 * 2 1 4 4 H 1.09002 * 109.46970 * 177.95407 * 3 2 1 5 5 C 1.50700 * 109.47234 * 57.95679 * 3 2 1 6 6 H 1.08003 * 119.99406 * 239.99943 * 5 3 2 7 7 C 1.37871 * 120.00004 * 59.99936 * 5 3 2 8 8 N 1.31509 * 120.00455 * 359.97438 * 7 5 3 9 9 Si 1.86801 * 120.00027 * 179.97438 * 7 5 3 10 10 H 1.48501 * 109.47060 * 89.99710 * 9 7 5 11 11 H 1.48501 * 109.47319 * 209.99908 * 9 7 5 12 12 H 1.48507 * 109.46983 * 330.00049 * 9 7 5 13 13 N 1.46897 * 109.47091 * 297.95497 * 3 2 1 14 14 C 1.46908 * 110.99837 * 273.78178 * 13 3 2 15 15 C 1.53002 * 109.46780 * 174.61032 * 14 13 3 16 16 O 1.42902 * 109.47221 * 64.99909 * 15 14 13 17 17 C 1.42902 * 113.99737 * 179.97438 * 16 15 14 18 18 C 1.52998 * 109.46848 * 180.02562 * 17 16 15 19 19 C 1.53004 * 117.49860 * 243.62486 * 18 17 16 20 20 C 1.52998 * 59.99909 * 252.51127 * 19 18 17 21 21 H 1.09000 * 109.47233 * 294.45762 * 1 2 3 22 22 H 1.09004 * 109.46687 * 54.45294 * 1 2 3 23 23 H 1.08993 * 109.46961 * 174.45444 * 1 2 3 24 24 H 1.08992 * 109.47235 * 239.99814 * 2 1 3 25 25 H 1.09006 * 109.46997 * 119.99335 * 2 1 3 26 26 H 0.97009 * 120.00662 * 179.97438 * 8 7 5 27 27 H 1.00898 * 111.00038 * 149.82576 * 13 3 2 28 28 H 1.08997 * 109.47126 * 54.60962 * 14 13 3 29 29 H 1.09000 * 109.47183 * 294.60840 * 14 13 3 30 30 H 1.09005 * 109.46605 * 184.99859 * 15 14 13 31 31 H 1.08996 * 109.46808 * 304.99529 * 15 14 13 32 32 H 1.08996 * 109.47197 * 300.00165 * 17 16 15 33 33 H 1.08999 * 109.46692 * 59.99910 * 17 16 15 34 34 H 1.08994 * 115.55407 * 29.32929 * 18 17 16 35 35 H 1.09006 * 117.49787 * 359.97438 * 19 18 17 36 36 H 1.08997 * 117.50047 * 145.01745 * 19 18 17 37 37 H 1.08999 * 117.49689 * 252.50981 * 20 19 18 38 38 H 1.09004 * 117.50002 * 107.49263 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 3.1294 1.4428 0.0367 5 6 1.4967 2.1675 1.2043 6 1 0.8797 3.0442 1.0739 7 6 1.7874 1.7114 2.4726 8 7 2.5384 0.6436 2.6314 9 14 1.1146 2.6104 3.9654 10 1 -0.2067 2.0406 4.3324 11 1 2.0551 2.4526 5.1037 12 1 0.9605 4.0527 3.6468 13 7 1.5911 2.1206 -1.2234 14 6 2.5282 1.8850 -2.3299 15 6 1.9619 2.4912 -3.6156 16 8 1.8869 3.9117 -3.4796 17 6 1.3686 4.5793 -4.6320 18 6 1.3343 6.0872 -4.3754 19 6 -0.0347 6.7703 -4.3609 20 6 0.9185 6.9921 -5.5369 21 1 -0.3634 0.4255 0.9354 22 1 -0.3633 0.5975 -0.8362 23 1 -0.3633 -1.0228 -0.0993 24 1 1.8934 -0.5138 -0.8899 25 1 1.8934 -0.5138 0.8901 26 1 2.7433 0.3229 3.5237 27 1 1.4622 3.1084 -1.0628 28 1 2.6686 0.8126 -2.4650 29 1 3.4864 2.3508 -2.1000 30 1 2.6129 2.2401 -4.4530 31 1 0.9648 2.0904 -3.7976 32 1 2.0075 4.3716 -5.4902 33 1 0.3592 4.2218 -4.8355 34 1 2.0927 6.4648 -3.6897 35 1 -0.9109 6.1455 -4.5346 36 1 -0.1771 7.5975 -3.6654 37 1 1.4033 7.9652 -5.6151 38 1 0.6695 6.5132 -6.4839 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000234039088.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:51:52 Heat of formation + Delta-G solvation = -34.101597 kcal Electronic energy + Delta-G solvation = -15904.311214 eV Core-core repulsion = 13361.263252 eV Total energy + Delta-G solvation = -2543.047963 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -38.38598 -36.83284 -35.75681 -32.66988 -30.81392 -28.50130 -26.61619 -25.31293 -23.08339 -22.49313 -21.54660 -20.58876 -18.92882 -16.80498 -16.28920 -15.86476 -15.26016 -14.85603 -14.37772 -14.06134 -13.51610 -13.42008 -12.85194 -12.26128 -12.07521 -11.85926 -11.63688 -11.42510 -11.12008 -10.89368 -10.87346 -10.62686 -10.46954 -10.32352 -10.21991 -9.96339 -9.63300 -9.30850 -9.28269 -8.70423 -8.40822 -7.12744 -5.95868 -4.00389 3.33761 3.40093 3.43767 3.55222 3.93640 4.45762 4.74042 4.80314 5.01528 5.23554 5.29995 5.36488 5.38740 5.48509 5.61464 5.66507 5.75765 5.78462 5.97835 5.99750 6.12557 6.33406 6.44725 6.58048 6.76179 6.91051 7.28139 7.38269 7.47605 7.56586 7.79968 7.87102 7.92026 8.34337 8.49531 8.78044 9.10286 9.64027 11.10350 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.027583 B = 0.005713 C = 0.005065 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1014.869649 B = 4900.172449 C = 5526.739323 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.102 4.102 3 C 0.213 3.787 4 H -0.001 1.001 5 C -0.509 4.509 6 H 0.059 0.941 7 C 0.062 3.938 8 N -0.891 5.891 9 Si 0.893 3.107 10 H -0.281 1.281 11 H -0.288 1.288 12 H -0.275 1.275 13 N -0.684 5.684 14 C 0.063 3.937 15 C 0.068 3.932 16 O -0.381 6.381 17 C 0.095 3.905 18 C -0.150 4.150 19 C -0.176 4.176 20 C -0.178 4.178 21 H 0.051 0.949 22 H 0.046 0.954 23 H 0.011 0.989 24 H 0.008 0.992 25 H 0.085 0.915 26 H 0.259 0.741 27 H 0.338 0.662 28 H 0.076 0.924 29 H 0.025 0.975 30 H 0.041 0.959 31 H 0.054 0.946 32 H 0.046 0.954 33 H 0.047 0.953 34 H 0.113 0.887 35 H 0.095 0.905 36 H 0.095 0.905 37 H 0.095 0.905 38 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.185 6.731 -13.835 15.539 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.140 4.140 3 C 0.106 3.894 4 H 0.017 0.983 5 C -0.548 4.548 6 H 0.077 0.923 7 C -0.139 4.139 8 N -0.530 5.530 9 Si 0.721 3.279 10 H -0.207 1.207 11 H -0.214 1.214 12 H -0.200 1.200 13 N -0.316 5.316 14 C -0.068 4.068 15 C -0.009 4.009 16 O -0.300 6.300 17 C 0.018 3.982 18 C -0.168 4.168 19 C -0.213 4.213 20 C -0.215 4.215 21 H 0.070 0.930 22 H 0.065 0.935 23 H 0.031 0.969 24 H 0.027 0.973 25 H 0.103 0.897 26 H 0.069 0.931 27 H 0.156 0.844 28 H 0.094 0.906 29 H 0.043 0.957 30 H 0.059 0.941 31 H 0.072 0.928 32 H 0.064 0.936 33 H 0.065 0.935 34 H 0.131 0.869 35 H 0.113 0.887 36 H 0.114 0.886 37 H 0.114 0.886 38 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -2.465 6.196 -13.700 15.237 hybrid contribution 0.356 0.803 0.883 1.245 sum -2.110 6.998 -12.817 14.755 Atomic orbital electron populations 1.21436 0.97559 0.97015 1.01592 1.21428 0.95064 0.98331 0.99188 1.19129 0.93256 0.91582 0.85462 0.98306 1.21203 1.31351 1.11830 0.90368 0.92325 1.24878 0.95142 0.95057 0.98815 1.69890 1.37598 1.23246 1.22250 0.86586 0.78737 0.80148 0.82466 1.20683 1.21377 1.19979 1.60668 1.46726 1.16956 1.07220 1.21891 0.94476 0.99215 0.91192 1.22654 0.99982 0.80287 0.97938 1.87913 1.84996 1.19413 1.37660 1.21904 0.97524 0.90346 0.88432 1.22148 0.99508 0.92902 1.02235 1.23051 0.93745 1.03408 1.01087 1.22957 1.04230 1.00863 0.93478 0.92965 0.93473 0.96940 0.97284 0.89703 0.93060 0.84388 0.90605 0.95674 0.94130 0.92780 0.93565 0.93451 0.86872 0.88665 0.88646 0.88627 0.88889 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.74 9.46 37.16 0.35 -2.38 16 2 C -0.10 -2.51 5.58 -26.73 -0.15 -2.66 16 3 C 0.21 5.46 2.30 -68.86 -0.16 5.30 16 4 H 0.00 -0.02 7.84 -51.93 -0.41 -0.43 16 5 C -0.51 -14.02 7.33 -34.44 -0.25 -14.28 16 6 H 0.06 1.62 7.60 -52.48 -0.40 1.22 16 7 C 0.06 1.74 5.30 -17.82 -0.09 1.64 16 8 N -0.89 -25.60 11.34 55.43 0.63 -24.97 16 9 Si 0.89 21.56 29.54 -169.99 -5.02 16.54 16 10 H -0.28 -6.74 7.11 56.52 0.40 -6.33 16 11 H -0.29 -6.92 7.11 56.52 0.40 -6.51 16 12 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 13 N -0.68 -15.06 5.51 -107.94 -0.59 -15.65 16 14 C 0.06 1.17 5.87 -3.82 -0.02 1.14 16 15 C 0.07 1.06 6.28 37.16 0.23 1.29 16 16 O -0.38 -6.19 9.96 -35.23 -0.35 -6.54 16 17 C 0.09 1.20 6.22 37.16 0.23 1.43 16 18 C -0.15 -1.75 6.06 -90.62 -0.55 -2.30 16 19 C -0.18 -1.82 10.18 -26.73 -0.27 -2.09 16 20 C -0.18 -1.63 10.25 -26.73 -0.27 -1.90 16 21 H 0.05 1.29 7.37 -51.93 -0.38 0.91 16 22 H 0.05 1.05 7.50 -51.93 -0.39 0.66 16 23 H 0.01 0.24 8.14 -51.93 -0.42 -0.18 16 24 H 0.01 0.20 7.43 -51.93 -0.39 -0.19 16 25 H 0.08 2.32 6.13 -51.93 -0.32 2.00 16 26 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 27 H 0.34 7.67 7.89 -39.29 -0.31 7.37 16 28 H 0.08 1.38 7.39 -51.93 -0.38 1.00 16 29 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 32 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.05 0.57 7.88 -51.93 -0.41 0.16 16 34 H 0.11 1.42 8.14 -51.93 -0.42 1.00 16 35 H 0.09 0.95 8.03 -51.93 -0.42 0.54 16 36 H 0.10 0.93 8.14 -51.93 -0.42 0.51 16 37 H 0.10 0.77 8.14 -51.93 -0.42 0.34 16 38 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 LS Contribution 309.13 15.07 4.66 4.66 Total: -1.00 -28.71 309.13 -8.38 -37.08 By element: Atomic # 1 Polarization: 10.42 SS G_CDS: -6.74 Total: 3.68 kcal Atomic # 6 Polarization: -13.85 SS G_CDS: -0.96 Total: -14.80 kcal Atomic # 7 Polarization: -40.65 SS G_CDS: 0.03 Total: -40.62 kcal Atomic # 8 Polarization: -6.19 SS G_CDS: -0.35 Total: -6.54 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -28.71 -8.38 -37.08 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000234039088.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.983 kcal (2) G-P(sol) polarization free energy of solvation -28.708 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.725 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.377 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.085 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.102 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds