Wall clock time and date at job start Sun Mar 29 2020 21:51:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53006 * 109.46972 * 2 1 4 4 H 1.09002 * 109.46970 * 177.95407 * 3 2 1 5 5 C 1.50700 * 109.47234 * 57.95679 * 3 2 1 6 6 H 1.08003 * 119.99406 * 239.99943 * 5 3 2 7 7 C 1.37871 * 120.00004 * 59.99936 * 5 3 2 8 8 N 1.31509 * 120.00455 * 359.97438 * 7 5 3 9 9 Si 1.86801 * 120.00027 * 179.97438 * 7 5 3 10 10 H 1.48501 * 109.47060 * 89.99710 * 9 7 5 11 11 H 1.48501 * 109.47319 * 209.99908 * 9 7 5 12 12 H 1.48507 * 109.46983 * 330.00049 * 9 7 5 13 13 N 1.46897 * 109.47091 * 297.95497 * 3 2 1 14 14 C 1.46908 * 110.99837 * 273.78178 * 13 3 2 15 15 C 1.53002 * 109.46780 * 174.61032 * 14 13 3 16 16 O 1.42902 * 109.47221 * 64.99909 * 15 14 13 17 17 C 1.42902 * 113.99737 * 179.97438 * 16 15 14 18 18 C 1.52998 * 109.46848 * 180.02562 * 17 16 15 19 19 C 1.53004 * 117.49860 * 243.62486 * 18 17 16 20 20 C 1.52998 * 59.99909 * 252.51127 * 19 18 17 21 21 H 1.09000 * 109.47233 * 294.45762 * 1 2 3 22 22 H 1.09004 * 109.46687 * 54.45294 * 1 2 3 23 23 H 1.08993 * 109.46961 * 174.45444 * 1 2 3 24 24 H 1.08992 * 109.47235 * 239.99814 * 2 1 3 25 25 H 1.09006 * 109.46997 * 119.99335 * 2 1 3 26 26 H 0.97009 * 120.00662 * 179.97438 * 8 7 5 27 27 H 1.00898 * 111.00038 * 149.82576 * 13 3 2 28 28 H 1.08997 * 109.47126 * 54.60962 * 14 13 3 29 29 H 1.09000 * 109.47183 * 294.60840 * 14 13 3 30 30 H 1.09005 * 109.46605 * 184.99859 * 15 14 13 31 31 H 1.08996 * 109.46808 * 304.99529 * 15 14 13 32 32 H 1.08996 * 109.47197 * 300.00165 * 17 16 15 33 33 H 1.08999 * 109.46692 * 59.99910 * 17 16 15 34 34 H 1.08994 * 115.55407 * 29.32929 * 18 17 16 35 35 H 1.09006 * 117.49787 * 359.97438 * 19 18 17 36 36 H 1.08997 * 117.50047 * 145.01745 * 19 18 17 37 37 H 1.08999 * 117.49689 * 252.50981 * 20 19 18 38 38 H 1.09004 * 117.50002 * 107.49263 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 3.1294 1.4428 0.0367 5 6 1.4967 2.1675 1.2043 6 1 0.8797 3.0442 1.0739 7 6 1.7874 1.7114 2.4726 8 7 2.5384 0.6436 2.6314 9 14 1.1146 2.6104 3.9654 10 1 -0.2067 2.0406 4.3324 11 1 2.0551 2.4526 5.1037 12 1 0.9605 4.0527 3.6468 13 7 1.5911 2.1206 -1.2234 14 6 2.5282 1.8850 -2.3299 15 6 1.9619 2.4912 -3.6156 16 8 1.8869 3.9117 -3.4796 17 6 1.3686 4.5793 -4.6320 18 6 1.3343 6.0872 -4.3754 19 6 -0.0347 6.7703 -4.3609 20 6 0.9185 6.9921 -5.5369 21 1 -0.3634 0.4255 0.9354 22 1 -0.3633 0.5975 -0.8362 23 1 -0.3633 -1.0228 -0.0993 24 1 1.8934 -0.5138 -0.8899 25 1 1.8934 -0.5138 0.8901 26 1 2.7433 0.3229 3.5237 27 1 1.4622 3.1084 -1.0628 28 1 2.6686 0.8126 -2.4650 29 1 3.4864 2.3508 -2.1000 30 1 2.6129 2.2401 -4.4530 31 1 0.9648 2.0904 -3.7976 32 1 2.0075 4.3716 -5.4902 33 1 0.3592 4.2218 -4.8355 34 1 2.0927 6.4648 -3.6897 35 1 -0.9109 6.1455 -4.5346 36 1 -0.1771 7.5975 -3.6654 37 1 1.4033 7.9652 -5.6151 38 1 0.6695 6.5132 -6.4839 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000234039088.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:51:51 Heat of formation + Delta-G solvation = -51.506638 kcal Electronic energy + Delta-G solvation = -15905.065954 eV Core-core repulsion = 13361.263252 eV Total energy + Delta-G solvation = -2543.802702 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.47791 -38.19118 -37.22006 -34.54739 -32.72118 -30.05954 -27.98871 -26.98929 -25.05225 -23.24700 -22.98353 -21.52680 -20.87823 -18.38932 -17.85028 -17.01635 -16.83252 -16.32601 -15.82512 -15.43143 -15.16594 -14.96610 -14.30471 -13.98643 -13.77342 -13.33975 -12.96857 -12.81825 -12.70204 -12.41362 -12.36719 -12.30980 -11.95158 -11.89544 -11.54584 -11.31841 -11.23131 -11.11579 -10.77571 -10.52514 -10.36108 -8.97590 -8.08705 -6.20514 1.42005 1.42833 1.52698 2.43487 2.61777 3.01529 3.19827 3.67431 3.90622 3.98823 4.13335 4.26603 4.38193 4.41657 4.51172 4.61269 4.67926 4.73789 4.78566 4.81121 4.85968 4.95464 5.01174 5.02676 5.25269 5.27282 5.31675 5.41487 5.58172 5.72578 5.84434 5.92089 6.29459 6.36463 6.52739 6.82303 7.04795 7.48015 8.96563 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.027583 B = 0.005713 C = 0.005065 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1014.869649 B = 4900.172449 C = 5526.739323 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.097 4.097 3 C 0.218 3.782 4 H -0.038 1.038 5 C -0.524 4.524 6 H 0.053 0.947 7 C 0.017 3.983 8 N -0.917 5.917 9 Si 0.954 3.046 10 H -0.275 1.275 11 H -0.284 1.284 12 H -0.271 1.271 13 N -0.677 5.677 14 C 0.060 3.940 15 C 0.077 3.923 16 O -0.409 6.409 17 C 0.092 3.908 18 C -0.174 4.174 19 C -0.182 4.182 20 C -0.155 4.155 21 H 0.029 0.971 22 H 0.053 0.947 23 H 0.036 0.964 24 H 0.024 0.976 25 H 0.057 0.943 26 H 0.261 0.739 27 H 0.333 0.667 28 H 0.080 0.920 29 H 0.012 0.988 30 H 0.070 0.930 31 H 0.058 0.942 32 H 0.063 0.937 33 H 0.054 0.946 34 H 0.097 0.903 35 H 0.098 0.902 36 H 0.097 0.903 37 H 0.108 0.892 38 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.123 7.317 -15.119 17.084 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.136 4.136 3 C 0.109 3.891 4 H -0.021 1.021 5 C -0.562 4.562 6 H 0.071 0.929 7 C -0.182 4.182 8 N -0.556 5.556 9 Si 0.780 3.220 10 H -0.201 1.201 11 H -0.210 1.210 12 H -0.195 1.195 13 N -0.308 5.308 14 C -0.069 4.069 15 C 0.001 3.999 16 O -0.329 6.329 17 C 0.016 3.984 18 C -0.193 4.193 19 C -0.219 4.219 20 C -0.191 4.191 21 H 0.048 0.952 22 H 0.072 0.928 23 H 0.055 0.945 24 H 0.043 0.957 25 H 0.075 0.925 26 H 0.070 0.930 27 H 0.150 0.850 28 H 0.099 0.901 29 H 0.031 0.969 30 H 0.088 0.912 31 H 0.077 0.923 32 H 0.081 0.919 33 H 0.072 0.928 34 H 0.115 0.885 35 H 0.116 0.884 36 H 0.115 0.885 37 H 0.126 0.874 38 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -3.407 6.787 -15.007 16.819 hybrid contribution 0.683 0.639 1.228 1.543 sum -2.724 7.426 -13.780 15.888 Atomic orbital electron populations 1.21295 0.96008 0.98499 1.00575 1.21303 0.96325 0.97436 0.98529 1.18959 0.90911 0.92529 0.86662 1.02064 1.21438 1.31381 1.11881 0.91504 0.92886 1.25612 0.95349 0.95746 1.01469 1.70018 1.38430 1.24348 1.22832 0.85616 0.78210 0.79087 0.79086 1.20053 1.20983 1.19548 1.60632 1.47429 1.16214 1.06536 1.21989 0.93496 0.99843 0.91616 1.22517 1.00603 0.80170 0.96630 1.87876 1.85516 1.19691 1.39810 1.22082 0.98037 0.90497 0.87746 1.22145 1.00093 0.92857 1.04178 1.23135 0.93324 1.03364 1.02105 1.23058 1.02273 1.00646 0.93163 0.95216 0.92794 0.94484 0.95743 0.92483 0.93012 0.85021 0.90135 0.96939 0.91153 0.92342 0.91888 0.92807 0.88510 0.88396 0.88500 0.87387 0.87344 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.80 9.46 71.98 0.68 -4.12 16 2 C -0.10 -4.82 5.58 30.60 0.17 -4.65 16 3 C 0.22 11.35 2.30 44.17 0.10 11.45 16 4 H -0.04 -2.23 7.84 -2.39 -0.02 -2.25 16 5 C -0.52 -29.24 7.33 25.60 0.19 -29.06 16 6 H 0.05 2.96 7.60 -2.91 -0.02 2.94 16 7 C 0.02 0.97 5.30 84.65 0.45 1.42 16 8 N -0.92 -53.45 11.34 21.44 0.24 -53.21 16 9 Si 0.95 44.37 29.54 68.60 2.03 46.40 16 10 H -0.27 -12.47 7.11 99.48 0.71 -11.76 16 11 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 12 H -0.27 -12.32 7.11 99.48 0.71 -11.61 16 13 N -0.68 -29.88 5.51 -495.42 -2.73 -32.60 16 14 C 0.06 2.23 5.87 86.30 0.51 2.74 16 15 C 0.08 2.26 6.28 71.98 0.45 2.71 16 16 O -0.41 -12.90 9.96 -148.98 -1.48 -14.39 16 17 C 0.09 2.18 6.22 71.98 0.45 2.63 16 18 C -0.17 -3.87 6.06 -10.79 -0.07 -3.94 16 19 C -0.18 -3.50 10.18 30.59 0.31 -3.19 16 20 C -0.15 -2.44 10.25 30.59 0.31 -2.13 16 21 H 0.03 1.44 7.37 -2.39 -0.02 1.42 16 22 H 0.05 2.33 7.50 -2.38 -0.02 2.31 16 23 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 24 H 0.02 1.10 7.43 -2.39 -0.02 1.08 16 25 H 0.06 3.16 6.13 -2.38 -0.01 3.14 16 26 H 0.26 14.47 8.31 -92.70 -0.77 13.70 16 27 H 0.33 15.26 7.89 -89.70 -0.71 14.55 16 28 H 0.08 2.87 7.39 -2.39 -0.02 2.85 16 29 H 0.01 0.49 8.14 -2.39 -0.02 0.47 16 30 H 0.07 1.65 8.14 -2.38 -0.02 1.64 16 31 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 32 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 33 H 0.05 1.19 7.88 -2.39 -0.02 1.17 16 34 H 0.10 2.44 8.14 -2.39 -0.02 2.42 16 35 H 0.10 1.80 8.03 -2.38 -0.02 1.79 16 36 H 0.10 1.79 8.14 -2.39 -0.02 1.77 16 37 H 0.11 1.45 8.14 -2.39 -0.02 1.43 16 38 H 0.11 1.40 8.14 -2.38 -0.02 1.38 16 Total: -1.00 -61.38 309.13 1.92 -59.47 By element: Atomic # 1 Polarization: 20.17 SS G_CDS: 0.30 Total: 20.47 kcal Atomic # 6 Polarization: -29.69 SS G_CDS: 3.56 Total: -26.14 kcal Atomic # 7 Polarization: -83.33 SS G_CDS: -2.49 Total: -85.81 kcal Atomic # 8 Polarization: -12.90 SS G_CDS: -1.48 Total: -14.39 kcal Atomic # 14 Polarization: 44.37 SS G_CDS: 2.03 Total: 46.40 kcal Total: -61.38 1.92 -59.47 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000234039088.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.959 kcal (2) G-P(sol) polarization free energy of solvation -61.382 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.423 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.916 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.465 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.507 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds