Wall clock time and date at job start Sun Mar 29 2020 21:51:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52998 * 109.46858 * 2 1 4 4 H 1.09005 * 109.47424 * 305.55555 * 3 2 1 5 5 C 1.50695 * 109.47167 * 185.56010 * 3 2 1 6 6 H 1.08002 * 119.99815 * 245.41009 * 5 3 2 7 7 C 1.37880 * 120.00308 * 65.40773 * 5 3 2 8 8 N 1.31509 * 119.99938 * 197.21051 * 7 5 3 9 9 Si 1.86797 * 119.99759 * 17.20819 * 7 5 3 10 10 H 1.48498 * 109.47253 * 86.87633 * 9 7 5 11 11 H 1.48503 * 109.46795 * 206.87585 * 9 7 5 12 12 H 1.48498 * 109.47249 * 326.87202 * 9 7 5 13 13 N 1.46898 * 109.47308 * 65.55572 * 3 2 1 14 14 C 1.46894 * 111.00368 * 251.67106 * 13 3 2 15 15 C 1.52995 * 109.47209 * 183.78831 * 14 13 3 16 16 H 1.09007 * 110.44048 * 56.09336 * 15 14 13 17 17 C 1.54809 * 110.49222 * 293.54510 * 15 14 13 18 18 C 1.54993 * 102.09900 * 220.44572 * 17 15 14 19 19 O 1.44381 * 103.48678 * 37.01933 * 18 17 15 20 20 C 1.43742 * 106.97846 * 319.94099 * 19 18 17 21 21 H 1.09002 * 109.88397 * 267.08845 * 20 19 18 22 22 C 1.53001 * 109.87858 * 145.93828 * 20 19 18 23 23 H 1.08992 * 109.47617 * 305.11533 * 1 2 3 24 24 H 1.08999 * 109.47244 * 65.12025 * 1 2 3 25 25 H 1.09004 * 109.47028 * 185.11362 * 1 2 3 26 26 H 1.09000 * 109.47020 * 119.99897 * 2 1 3 27 27 H 1.08996 * 109.47133 * 240.00375 * 2 1 3 28 28 H 0.97009 * 120.00005 * 180.02562 * 8 7 5 29 29 H 1.00903 * 110.99755 * 15.62808 * 13 3 2 30 30 H 1.09000 * 109.47493 * 303.79032 * 14 13 3 31 31 H 1.09003 * 109.47117 * 63.78874 * 14 13 3 32 32 H 1.09003 * 110.90577 * 338.64461 * 17 15 14 33 33 H 1.09004 * 110.90802 * 102.20725 * 17 15 14 34 34 H 1.08991 * 110.62115 * 155.52037 * 18 17 15 35 35 H 1.09006 * 110.61556 * 278.52298 * 18 17 15 36 36 H 1.09005 * 109.46952 * 302.16966 * 22 20 19 37 37 H 1.09002 * 109.47331 * 62.16865 * 22 20 19 38 38 H 1.08999 * 109.47319 * 182.16791 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5976 1.9843 -0.8361 5 6 3.5406 1.4448 -0.1377 6 1 4.1566 1.8072 0.6721 7 6 4.1273 0.9843 -1.2973 8 7 5.4032 0.6656 -1.3071 9 14 3.1098 0.8130 -2.8545 10 1 3.1036 2.1050 -3.5864 11 1 3.6994 -0.2420 -3.7174 12 1 1.7176 0.4395 -2.4975 13 7 1.6628 2.0952 1.2608 14 6 0.6019 3.0876 1.0431 15 6 0.3028 3.8111 2.3577 16 1 1.2104 4.2620 2.7591 17 6 -0.3167 2.8333 3.3856 18 6 -1.4141 3.7071 4.0447 19 8 -1.9197 4.4973 2.9472 20 6 -0.7872 4.8802 2.1490 21 1 -0.4182 5.8537 2.4720 22 6 -1.1859 4.9355 0.6729 23 1 -0.3634 0.5911 0.8405 24 1 -0.3634 0.4323 -0.9323 25 1 -0.3633 -1.0236 0.0916 26 1 1.8933 -0.5138 0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 5.8160 0.3419 -2.1231 29 1 1.3848 1.4142 1.9515 30 1 0.9289 3.8113 0.2964 31 1 -0.2992 2.5850 0.6918 32 1 -0.7554 1.9697 2.8855 33 1 0.4250 2.5197 4.1202 34 1 -2.2029 3.0820 4.4629 35 1 -0.9834 4.3490 4.8134 36 1 -1.5714 3.9638 0.3641 37 1 -1.9568 5.6934 0.5329 38 1 -0.3138 5.1887 0.0702 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000234039550.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:51:32 Heat of formation + Delta-G solvation = -53.807694 kcal Electronic energy + Delta-G solvation = -16731.471353 eV Core-core repulsion = 14187.568870 eV Total energy + Delta-G solvation = -2543.902483 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.74790 -36.74325 -33.66455 -32.01633 -31.42835 -30.38360 -27.54757 -25.80832 -23.89623 -22.40243 -22.01692 -19.91546 -19.24110 -16.78187 -16.59053 -15.68788 -15.20982 -15.02359 -14.72311 -14.11737 -13.44226 -13.00479 -12.80838 -12.70738 -12.39036 -12.18679 -12.10189 -11.78873 -11.61847 -11.12177 -10.99200 -10.82352 -10.60048 -10.52538 -10.47556 -10.24943 -9.92261 -9.66974 -9.41589 -9.31203 -8.35789 -7.30503 -6.05325 -3.95543 3.28426 3.37356 3.39559 3.91584 4.44694 4.59670 4.83220 4.85467 5.11901 5.20925 5.24058 5.43950 5.47260 5.55827 5.64299 5.75352 5.77191 5.83609 5.87080 5.96896 6.01573 6.07427 6.10189 6.21983 6.29003 6.40894 6.52623 6.58732 6.75801 6.89637 6.99367 7.19402 7.80018 7.96505 8.35810 8.75043 9.13350 9.62410 11.08226 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.037134 B = 0.006939 C = 0.006877 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 753.845579 B = 4034.120608 C = 4070.621890 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.147 4.147 3 C 0.194 3.806 4 H 0.019 0.981 5 C -0.499 4.499 6 H 0.080 0.920 7 C 0.071 3.929 8 N -0.894 5.894 9 Si 0.858 3.142 10 H -0.280 1.280 11 H -0.289 1.289 12 H -0.258 1.258 13 N -0.673 5.673 14 C 0.067 3.933 15 C -0.116 4.116 16 H 0.091 0.909 17 C -0.150 4.150 18 C 0.047 3.953 19 O -0.380 6.380 20 C 0.077 3.923 21 H 0.066 0.934 22 C -0.155 4.155 23 H 0.045 0.955 24 H 0.044 0.956 25 H 0.042 0.958 26 H 0.058 0.942 27 H 0.061 0.939 28 H 0.262 0.738 29 H 0.325 0.675 30 H 0.072 0.928 31 H 0.025 0.975 32 H 0.073 0.927 33 H 0.082 0.918 34 H 0.087 0.913 35 H 0.058 0.942 36 H 0.065 0.935 37 H 0.055 0.945 38 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.283 4.608 6.659 15.557 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.186 4.186 3 C 0.085 3.915 4 H 0.037 0.963 5 C -0.538 4.538 6 H 0.098 0.902 7 C -0.130 4.130 8 N -0.532 5.532 9 Si 0.685 3.315 10 H -0.206 1.206 11 H -0.215 1.215 12 H -0.182 1.182 13 N -0.303 5.303 14 C -0.063 4.063 15 C -0.135 4.135 16 H 0.109 0.891 17 C -0.187 4.187 18 C -0.030 4.030 19 O -0.300 6.300 20 C 0.019 3.981 21 H 0.084 0.916 22 C -0.212 4.212 23 H 0.064 0.936 24 H 0.063 0.937 25 H 0.061 0.939 26 H 0.076 0.924 27 H 0.080 0.920 28 H 0.072 0.928 29 H 0.142 0.858 30 H 0.090 0.910 31 H 0.043 0.957 32 H 0.092 0.908 33 H 0.100 0.900 34 H 0.106 0.894 35 H 0.076 0.924 36 H 0.084 0.916 37 H 0.074 0.926 38 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -12.828 5.059 6.455 15.226 hybrid contribution -0.927 -0.806 -1.083 1.637 sum -13.755 4.253 5.372 15.367 Atomic orbital electron populations 1.21952 0.98575 1.00174 1.00594 1.22539 0.92596 1.01480 1.02031 1.19537 0.96632 0.88365 0.86968 0.96347 1.21009 0.89217 1.41292 1.02240 0.90230 1.24906 0.94730 0.94723 0.98660 1.69989 1.11912 1.43523 1.27746 0.87290 0.81814 0.77935 0.84468 1.20616 1.21537 1.18203 1.60607 1.39018 1.18855 1.11857 1.22190 0.93273 0.95601 0.95192 1.22614 0.98370 0.95544 0.96936 0.89065 1.23190 0.98148 0.98704 0.98705 1.23509 0.96700 0.92899 0.89888 1.88847 1.30629 1.71444 1.39044 1.22749 0.86030 0.97167 0.92127 0.91628 1.22029 1.02023 1.02689 0.94423 0.93607 0.93713 0.93915 0.92363 0.92029 0.92824 0.85824 0.90978 0.95703 0.90823 0.89957 0.89434 0.92416 0.91623 0.92591 0.90678 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.69 9.44 37.16 0.35 -2.34 16 2 C -0.15 -3.10 4.56 -26.73 -0.12 -3.22 16 3 C 0.19 4.45 1.73 -68.87 -0.12 4.33 16 4 H 0.02 0.44 6.15 -51.93 -0.32 0.12 16 5 C -0.50 -13.97 9.25 -34.44 -0.32 -14.29 16 6 H 0.08 2.47 8.06 -52.49 -0.42 2.05 16 7 C 0.07 2.04 5.30 -17.82 -0.09 1.95 16 8 N -0.89 -27.24 13.96 55.43 0.77 -26.47 16 9 Si 0.86 21.08 25.86 -169.99 -4.40 16.68 16 10 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 11 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 12 H -0.26 -5.93 5.64 56.52 0.32 -5.62 16 13 N -0.67 -13.25 6.03 -107.96 -0.65 -13.90 16 14 C 0.07 1.11 3.26 -3.83 -0.01 1.09 16 15 C -0.12 -1.60 3.30 -89.09 -0.29 -1.89 16 16 H 0.09 1.31 8.14 -51.93 -0.42 0.88 16 17 C -0.15 -1.83 5.94 -24.73 -0.15 -1.98 16 18 C 0.05 0.53 7.72 38.21 0.29 0.82 16 19 O -0.38 -5.26 11.19 -35.23 -0.39 -5.65 16 20 C 0.08 1.01 4.05 -26.15 -0.11 0.90 16 21 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 22 C -0.15 -1.93 8.40 37.16 0.31 -1.62 16 23 H 0.04 0.73 5.96 -51.93 -0.31 0.42 16 24 H 0.04 0.78 8.14 -51.93 -0.42 0.35 16 25 H 0.04 0.66 8.14 -51.93 -0.42 0.23 16 26 H 0.06 1.21 8.06 -51.93 -0.42 0.79 16 27 H 0.06 1.39 5.17 -51.93 -0.27 1.13 16 28 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 29 H 0.32 5.92 6.97 -39.29 -0.27 5.64 16 30 H 0.07 1.25 6.56 -51.93 -0.34 0.91 16 31 H 0.03 0.41 5.31 -51.93 -0.28 0.13 16 32 H 0.07 0.94 7.83 -51.93 -0.41 0.53 16 33 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 34 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 35 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.06 0.87 6.75 -51.93 -0.35 0.51 16 37 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 38 H 0.07 0.92 6.80 -51.93 -0.35 0.56 16 LS Contribution 286.92 15.07 4.32 4.32 Total: -1.00 -30.02 286.92 -6.94 -36.96 By element: Atomic # 1 Polarization: 10.65 SS G_CDS: -6.34 Total: 4.31 kcal Atomic # 6 Polarization: -16.00 SS G_CDS: -0.26 Total: -16.25 kcal Atomic # 7 Polarization: -40.49 SS G_CDS: 0.12 Total: -40.37 kcal Atomic # 8 Polarization: -5.26 SS G_CDS: -0.39 Total: -5.65 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -4.40 Total: 16.68 kcal Total LS contribution 4.32 Total: 4.32 kcal Total: -30.02 -6.94 -36.96 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000234039550.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.849 kcal (2) G-P(sol) polarization free energy of solvation -30.020 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.870 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.938 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.958 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.808 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds