Wall clock time and date at job start Sun Mar 29 2020 21:51:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52998 * 109.46858 * 2 1 4 4 H 1.09005 * 109.47424 * 305.55555 * 3 2 1 5 5 C 1.50695 * 109.47167 * 185.56010 * 3 2 1 6 6 H 1.08002 * 119.99815 * 245.41009 * 5 3 2 7 7 C 1.37880 * 120.00308 * 65.40773 * 5 3 2 8 8 N 1.31509 * 119.99938 * 197.21051 * 7 5 3 9 9 Si 1.86797 * 119.99759 * 17.20819 * 7 5 3 10 10 H 1.48498 * 109.47253 * 86.87633 * 9 7 5 11 11 H 1.48503 * 109.46795 * 206.87585 * 9 7 5 12 12 H 1.48498 * 109.47249 * 326.87202 * 9 7 5 13 13 N 1.46898 * 109.47308 * 65.55572 * 3 2 1 14 14 C 1.46894 * 111.00368 * 251.67106 * 13 3 2 15 15 C 1.52995 * 109.47209 * 183.78831 * 14 13 3 16 16 H 1.09007 * 110.44048 * 56.09336 * 15 14 13 17 17 C 1.54809 * 110.49222 * 293.54510 * 15 14 13 18 18 C 1.54993 * 102.09900 * 220.44572 * 17 15 14 19 19 O 1.44381 * 103.48678 * 37.01933 * 18 17 15 20 20 C 1.43742 * 106.97846 * 319.94099 * 19 18 17 21 21 H 1.09002 * 109.88397 * 267.08845 * 20 19 18 22 22 C 1.53001 * 109.87858 * 145.93828 * 20 19 18 23 23 H 1.08992 * 109.47617 * 305.11533 * 1 2 3 24 24 H 1.08999 * 109.47244 * 65.12025 * 1 2 3 25 25 H 1.09004 * 109.47028 * 185.11362 * 1 2 3 26 26 H 1.09000 * 109.47020 * 119.99897 * 2 1 3 27 27 H 1.08996 * 109.47133 * 240.00375 * 2 1 3 28 28 H 0.97009 * 120.00005 * 180.02562 * 8 7 5 29 29 H 1.00903 * 110.99755 * 15.62808 * 13 3 2 30 30 H 1.09000 * 109.47493 * 303.79032 * 14 13 3 31 31 H 1.09003 * 109.47117 * 63.78874 * 14 13 3 32 32 H 1.09003 * 110.90577 * 338.64461 * 17 15 14 33 33 H 1.09004 * 110.90802 * 102.20725 * 17 15 14 34 34 H 1.08991 * 110.62115 * 155.52037 * 18 17 15 35 35 H 1.09006 * 110.61556 * 278.52298 * 18 17 15 36 36 H 1.09005 * 109.46952 * 302.16966 * 22 20 19 37 37 H 1.09002 * 109.47331 * 62.16865 * 22 20 19 38 38 H 1.08999 * 109.47319 * 182.16791 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5976 1.9843 -0.8361 5 6 3.5406 1.4448 -0.1377 6 1 4.1566 1.8072 0.6721 7 6 4.1273 0.9843 -1.2973 8 7 5.4032 0.6656 -1.3071 9 14 3.1098 0.8130 -2.8545 10 1 3.1036 2.1050 -3.5864 11 1 3.6994 -0.2420 -3.7174 12 1 1.7176 0.4395 -2.4975 13 7 1.6628 2.0952 1.2608 14 6 0.6019 3.0876 1.0431 15 6 0.3028 3.8111 2.3577 16 1 1.2104 4.2620 2.7591 17 6 -0.3167 2.8333 3.3856 18 6 -1.4141 3.7071 4.0447 19 8 -1.9197 4.4973 2.9472 20 6 -0.7872 4.8802 2.1490 21 1 -0.4182 5.8537 2.4720 22 6 -1.1859 4.9355 0.6729 23 1 -0.3634 0.5911 0.8405 24 1 -0.3634 0.4323 -0.9323 25 1 -0.3633 -1.0236 0.0916 26 1 1.8933 -0.5138 0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 5.8160 0.3419 -2.1231 29 1 1.3848 1.4142 1.9515 30 1 0.9289 3.8113 0.2964 31 1 -0.2992 2.5850 0.6918 32 1 -0.7554 1.9697 2.8855 33 1 0.4250 2.5197 4.1202 34 1 -2.2029 3.0820 4.4629 35 1 -0.9834 4.3490 4.8134 36 1 -1.5714 3.9638 0.3641 37 1 -1.9568 5.6934 0.5329 38 1 -0.3138 5.1887 0.0702 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000234039550.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:51:32 Heat of formation + Delta-G solvation = -75.141323 kcal Electronic energy + Delta-G solvation = -16732.396449 eV Core-core repulsion = 14187.568870 eV Total energy + Delta-G solvation = -2544.827579 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.80076 -38.33113 -35.10785 -33.96765 -32.43691 -31.74130 -29.29509 -26.99092 -25.31077 -23.99692 -23.02457 -21.66008 -20.43846 -18.74742 -17.79564 -16.72897 -16.69417 -16.37985 -16.04030 -15.79881 -14.83755 -14.66378 -14.32289 -14.01043 -13.59970 -13.48132 -13.40519 -13.18650 -12.98993 -12.63596 -12.52341 -12.30093 -12.06061 -11.74901 -11.69272 -11.60307 -11.56459 -11.32613 -11.21199 -10.59896 -10.48337 -8.90940 -8.26506 -6.21246 1.33510 1.37038 1.45428 2.36768 2.97019 3.05848 3.40404 3.70669 3.81708 4.13970 4.19062 4.28449 4.33942 4.36958 4.45623 4.46522 4.50998 4.66923 4.74237 4.78832 4.83134 4.94377 4.97831 5.05677 5.11007 5.15205 5.16225 5.18642 5.30027 5.36970 5.51456 5.76678 6.02258 6.09688 6.73019 6.84130 6.87656 7.41238 8.91036 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.037134 B = 0.006939 C = 0.006877 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 753.845579 B = 4034.120608 C = 4070.621890 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.146 4.146 3 C 0.199 3.801 4 H 0.017 0.983 5 C -0.506 4.506 6 H 0.031 0.969 7 C 0.014 3.986 8 N -0.945 5.945 9 Si 0.925 3.075 10 H -0.277 1.277 11 H -0.289 1.289 12 H -0.230 1.230 13 N -0.685 5.685 14 C 0.072 3.928 15 C -0.113 4.113 16 H 0.083 0.917 17 C -0.148 4.148 18 C 0.047 3.953 19 O -0.396 6.396 20 C 0.079 3.921 21 H 0.075 0.925 22 C -0.154 4.154 23 H 0.059 0.941 24 H 0.046 0.954 25 H 0.065 0.935 26 H 0.054 0.946 27 H 0.045 0.955 28 H 0.263 0.737 29 H 0.334 0.666 30 H 0.060 0.940 31 H 0.034 0.966 32 H 0.071 0.929 33 H 0.089 0.911 34 H 0.106 0.894 35 H 0.071 0.929 36 H 0.058 0.942 37 H 0.066 0.934 38 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.011 4.595 6.712 17.959 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.185 4.185 3 C 0.090 3.910 4 H 0.035 0.965 5 C -0.545 4.545 6 H 0.049 0.951 7 C -0.183 4.183 8 N -0.585 5.585 9 Si 0.749 3.251 10 H -0.203 1.203 11 H -0.215 1.215 12 H -0.153 1.153 13 N -0.316 5.316 14 C -0.057 4.057 15 C -0.133 4.133 16 H 0.101 0.899 17 C -0.185 4.185 18 C -0.029 4.029 19 O -0.316 6.316 20 C 0.021 3.979 21 H 0.093 0.907 22 C -0.211 4.211 23 H 0.078 0.922 24 H 0.065 0.935 25 H 0.084 0.916 26 H 0.073 0.927 27 H 0.063 0.937 28 H 0.072 0.928 29 H 0.152 0.848 30 H 0.078 0.922 31 H 0.052 0.948 32 H 0.090 0.910 33 H 0.107 0.893 34 H 0.124 0.876 35 H 0.089 0.911 36 H 0.077 0.923 37 H 0.085 0.915 38 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -15.588 5.054 6.533 17.641 hybrid contribution -0.010 -0.760 -0.979 1.240 sum -15.598 4.293 5.554 17.105 Atomic orbital electron populations 1.21850 0.95091 1.02066 1.01342 1.22390 0.95631 0.99350 1.01108 1.19313 0.93234 0.90087 0.88380 0.96508 1.21323 0.91917 1.40360 1.00873 0.95066 1.25743 0.95834 0.94532 1.02179 1.70137 1.14169 1.45460 1.28736 0.86205 0.81415 0.77870 0.79622 1.20322 1.21509 1.15296 1.60404 1.41122 1.19382 1.10712 1.22180 0.92362 0.94612 0.96540 1.22538 0.98635 0.96141 0.95938 0.89869 1.23180 0.98584 0.98355 0.98410 1.23665 0.96939 0.92902 0.89435 1.88833 1.31053 1.71887 1.39810 1.22752 0.85591 0.97127 0.92455 0.90696 1.22018 1.02302 1.02659 0.94131 0.92243 0.93471 0.91609 0.92748 0.93678 0.92786 0.84791 0.92170 0.94753 0.91025 0.89266 0.87614 0.91127 0.92288 0.91528 0.90766 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.53 9.44 71.98 0.68 -3.85 16 2 C -0.15 -5.87 4.56 30.59 0.14 -5.73 16 3 C 0.20 9.01 1.73 44.17 0.08 9.09 16 4 H 0.02 0.78 6.15 -2.38 -0.01 0.77 16 5 C -0.51 -29.05 9.25 25.60 0.24 -28.81 16 6 H 0.03 2.03 8.06 -2.91 -0.02 2.01 16 7 C 0.01 0.84 5.30 84.66 0.45 1.28 16 8 N -0.94 -59.42 13.96 21.45 0.30 -59.12 16 9 Si 0.92 43.55 25.86 68.60 1.77 45.32 16 10 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 11 H -0.29 -13.53 7.11 99.48 0.71 -12.83 16 12 H -0.23 -9.72 5.64 99.48 0.56 -9.16 16 13 N -0.69 -26.46 6.03 -495.48 -2.99 -29.45 16 14 C 0.07 2.27 3.26 86.30 0.28 2.55 16 15 C -0.11 -2.95 3.30 -9.80 -0.03 -2.98 16 16 H 0.08 2.30 8.14 -2.38 -0.02 2.28 16 17 C -0.15 -3.25 5.94 31.89 0.19 -3.06 16 18 C 0.05 0.91 7.72 72.66 0.56 1.48 16 19 O -0.40 -9.90 11.19 -148.98 -1.67 -11.57 16 20 C 0.08 1.88 4.05 30.97 0.13 2.01 16 21 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 22 C -0.15 -3.55 8.40 71.98 0.60 -2.95 16 23 H 0.06 1.67 5.96 -2.39 -0.01 1.66 16 24 H 0.05 1.45 8.14 -2.39 -0.02 1.43 16 25 H 0.06 1.76 8.14 -2.38 -0.02 1.74 16 26 H 0.05 2.20 8.06 -2.39 -0.02 2.18 16 27 H 0.04 1.95 5.17 -2.39 -0.01 1.94 16 28 H 0.26 15.53 8.31 -92.70 -0.77 14.76 16 29 H 0.33 11.74 6.97 -89.69 -0.63 11.11 16 30 H 0.06 2.03 6.56 -2.39 -0.02 2.02 16 31 H 0.03 1.03 5.31 -2.39 -0.01 1.02 16 32 H 0.07 1.61 7.83 -2.39 -0.02 1.60 16 33 H 0.09 1.84 8.14 -2.38 -0.02 1.82 16 34 H 0.11 1.69 8.14 -2.39 -0.02 1.67 16 35 H 0.07 1.21 8.14 -2.38 -0.02 1.19 16 36 H 0.06 1.43 6.75 -2.38 -0.02 1.41 16 37 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 38 H 0.07 1.70 6.80 -2.39 -0.02 1.69 16 Total: -1.00 -65.65 286.92 0.99 -64.66 By element: Atomic # 1 Polarization: 20.87 SS G_CDS: 0.26 Total: 21.13 kcal Atomic # 6 Polarization: -34.28 SS G_CDS: 3.31 Total: -30.97 kcal Atomic # 7 Polarization: -85.88 SS G_CDS: -2.69 Total: -88.57 kcal Atomic # 8 Polarization: -9.90 SS G_CDS: -1.67 Total: -11.57 kcal Atomic # 14 Polarization: 43.55 SS G_CDS: 1.77 Total: 45.32 kcal Total: -65.65 0.99 -64.66 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000234039550.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.479 kcal (2) G-P(sol) polarization free energy of solvation -65.654 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.133 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.991 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.663 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.141 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds