Wall clock time and date at job start Sun Mar 29 2020 21:51:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52997 * 109.47627 * 2 1 4 4 H 1.08997 * 109.47447 * 174.08532 * 3 2 1 5 5 C 1.50698 * 109.46837 * 54.08664 * 3 2 1 6 6 H 1.07997 * 120.00162 * 239.99676 * 5 3 2 7 7 C 1.37879 * 120.00354 * 60.00260 * 5 3 2 8 8 N 1.31521 * 119.99424 * 359.97438 * 7 5 3 9 9 Si 1.86801 * 120.00453 * 179.97438 * 7 5 3 10 10 H 1.48499 * 109.47001 * 90.00050 * 9 7 5 11 11 H 1.48493 * 109.46985 * 210.00142 * 9 7 5 12 12 H 1.48497 * 109.47028 * 330.00255 * 9 7 5 13 13 N 1.46895 * 109.47337 * 294.08961 * 3 2 1 14 14 C 1.46904 * 110.99996 * 275.77918 * 13 3 2 15 15 C 1.53000 * 109.47259 * 176.23413 * 14 13 3 16 16 H 1.08999 * 110.75539 * 308.47614 * 15 14 13 17 17 C 1.55312 * 110.84618 * 72.16830 * 15 14 13 18 18 C 1.54943 * 100.94162 * 152.32331 * 17 15 14 19 19 O 1.43650 * 105.13526 * 323.55564 * 18 17 15 20 20 C 1.43233 * 109.97179 * 24.43031 * 19 18 17 21 21 H 1.09006 * 109.82873 * 238.77847 * 20 19 18 22 22 C 1.53001 * 109.90770 * 117.84464 * 20 19 18 23 23 H 1.08993 * 109.47345 * 178.55607 * 1 2 3 24 24 H 1.08997 * 109.46988 * 298.56044 * 1 2 3 25 25 H 1.08997 * 109.46769 * 58.55454 * 1 2 3 26 26 H 1.09005 * 109.47064 * 239.99910 * 2 1 3 27 27 H 1.09004 * 109.47052 * 120.00101 * 2 1 3 28 28 H 0.96997 * 119.99646 * 180.02562 * 8 7 5 29 29 H 1.00901 * 111.00211 * 39.72710 * 13 3 2 30 30 H 1.08999 * 109.46943 * 56.23462 * 14 13 3 31 31 H 1.09001 * 109.46690 * 296.23669 * 14 13 3 32 32 H 1.09003 * 111.12305 * 270.24183 * 17 15 14 33 33 H 1.08999 * 111.12346 * 34.40248 * 17 15 14 34 34 H 1.09001 * 110.30996 * 204.64315 * 18 17 15 35 35 H 1.09000 * 110.39487 * 82.51511 * 18 17 15 36 36 H 1.08998 * 109.46720 * 301.82016 * 22 20 19 37 37 H 1.09003 * 109.47161 * 61.81851 * 22 20 19 38 38 H 1.08998 * 109.47073 * 181.82149 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 3.1249 1.4442 0.1059 5 6 1.4218 2.1938 1.1507 6 1 0.8151 3.0670 0.9618 7 6 1.6309 1.7666 2.4449 8 7 2.3695 0.7030 2.6750 9 14 0.8651 2.6984 3.8714 10 1 -0.4772 2.1360 4.1663 11 1 1.7312 2.5669 5.0704 12 1 0.7326 4.1330 3.5113 13 7 1.6704 2.0926 -1.2643 14 6 2.6512 1.7938 -2.3164 15 6 2.1849 2.4082 -3.6377 16 1 1.1577 2.1175 -3.8577 17 6 2.3328 3.9540 -3.6111 18 6 2.5278 4.2569 -5.1181 19 8 3.3089 3.1620 -5.6226 20 6 3.1283 2.0087 -4.7926 21 1 4.0896 1.6882 -4.3907 22 6 2.5017 0.8744 -5.6060 23 1 -0.3634 -1.0273 -0.0259 24 1 -0.3633 0.4913 0.9026 25 1 -0.3633 0.5361 -0.8767 26 1 1.8933 -0.5139 -0.8900 27 1 1.8933 -0.5139 0.8900 28 1 2.5163 0.4022 3.5854 29 1 0.7406 1.8248 -1.5503 30 1 2.7438 0.7137 -2.4306 31 1 3.6185 2.2144 -2.0414 32 1 1.4290 4.4285 -3.2287 33 1 3.2068 4.2551 -3.0335 34 1 3.0646 5.1965 -5.2488 35 1 1.5637 4.2990 -5.6249 36 1 1.5487 1.2063 -6.0179 37 1 3.1722 0.5971 -6.4194 38 1 2.3377 0.0119 -4.9601 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000234039968.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:51:34 Heat of formation + Delta-G solvation = -64.079950 kcal Electronic energy + Delta-G solvation = -16478.240539 eV Core-core repulsion = 13933.892617 eV Total energy + Delta-G solvation = -2544.347922 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.54883 -36.54674 -33.57917 -31.74008 -31.29523 -30.01916 -27.14889 -25.68554 -23.44611 -22.99345 -21.34372 -20.31733 -19.27666 -16.56538 -16.20089 -15.56936 -14.78157 -14.49992 -14.28184 -13.92279 -13.53347 -13.34275 -12.82994 -12.50122 -12.34731 -11.96162 -11.90237 -11.48015 -11.32433 -11.02261 -10.87005 -10.59835 -10.57403 -10.52022 -10.46505 -9.93987 -9.73421 -9.54552 -9.42670 -8.96554 -8.34915 -7.21003 -5.97675 -3.99175 3.31822 3.38920 3.43100 3.95345 4.42671 4.63724 4.85591 5.04516 5.27686 5.34092 5.34960 5.40982 5.59292 5.66382 5.68771 5.79635 5.91016 6.07902 6.16113 6.19218 6.25908 6.32986 6.33962 6.37384 6.55201 6.59539 6.88705 7.13779 7.27072 7.28710 7.49606 7.69470 7.88879 8.28367 8.53986 8.62632 9.06498 9.64566 11.09516 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.039504 B = 0.006184 C = 0.005705 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 708.617380 B = 4526.561153 C = 4906.991176 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.145 4.145 3 C 0.215 3.785 4 H 0.032 0.968 5 C -0.488 4.488 6 H 0.061 0.939 7 C 0.056 3.944 8 N -0.897 5.897 9 Si 0.893 3.107 10 H -0.282 1.282 11 H -0.288 1.288 12 H -0.274 1.274 13 N -0.682 5.682 14 C 0.071 3.929 15 C -0.113 4.113 16 H 0.080 0.920 17 C -0.136 4.136 18 C 0.047 3.953 19 O -0.385 6.385 20 C 0.078 3.922 21 H 0.079 0.921 22 C -0.160 4.160 23 H 0.021 0.979 24 H 0.066 0.934 25 H 0.029 0.971 26 H 0.010 0.990 27 H 0.092 0.908 28 H 0.259 0.741 29 H 0.325 0.675 30 H 0.021 0.979 31 H 0.066 0.934 32 H 0.085 0.915 33 H 0.080 0.920 34 H 0.080 0.920 35 H 0.054 0.946 36 H 0.056 0.944 37 H 0.058 0.942 38 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.826 1.748 -12.258 12.410 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.185 4.185 3 C 0.107 3.893 4 H 0.050 0.950 5 C -0.527 4.527 6 H 0.079 0.921 7 C -0.144 4.144 8 N -0.536 5.536 9 Si 0.721 3.279 10 H -0.209 1.209 11 H -0.214 1.214 12 H -0.199 1.199 13 N -0.313 5.313 14 C -0.059 4.059 15 C -0.132 4.132 16 H 0.098 0.902 17 C -0.174 4.174 18 C -0.029 4.029 19 O -0.305 6.305 20 C 0.020 3.980 21 H 0.097 0.903 22 C -0.217 4.217 23 H 0.041 0.959 24 H 0.085 0.915 25 H 0.048 0.952 26 H 0.029 0.971 27 H 0.110 0.890 28 H 0.069 0.931 29 H 0.143 0.857 30 H 0.039 0.961 31 H 0.084 0.916 32 H 0.104 0.896 33 H 0.098 0.902 34 H 0.098 0.902 35 H 0.072 0.928 36 H 0.075 0.925 37 H 0.077 0.923 38 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -0.329 2.258 -12.110 12.323 hybrid contribution -0.765 -0.612 0.855 1.300 sum -1.094 1.647 -11.254 11.427 Atomic orbital electron populations 1.21557 0.97687 0.97954 1.01229 1.22104 0.95018 1.01219 1.00156 1.19190 0.96030 0.88597 0.85448 0.95011 1.21060 1.30398 1.11482 0.89757 0.92078 1.24918 0.95574 0.95197 0.98716 1.69888 1.39268 1.24177 1.20309 0.86575 0.78966 0.80364 0.81974 1.20876 1.21435 1.19935 1.60866 1.03789 1.63159 1.03467 1.21852 0.97364 0.96698 0.90021 1.22798 0.99466 0.95891 0.95092 0.90210 1.23169 1.03737 0.95330 0.95151 1.23411 0.95219 0.90255 0.94041 1.88377 1.68485 1.20867 1.52757 1.22749 0.98779 0.86455 0.89977 0.90290 1.22122 1.00986 0.98110 1.00501 0.95949 0.91535 0.95219 0.97130 0.88997 0.93139 0.85721 0.96112 0.91593 0.89638 0.90180 0.90197 0.92758 0.92457 0.92304 0.91480 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.67 9.39 37.16 0.35 -2.33 16 2 C -0.15 -3.36 5.50 -26.73 -0.15 -3.51 16 3 C 0.22 5.22 2.33 -68.87 -0.16 5.06 16 4 H 0.03 0.86 7.86 -51.93 -0.41 0.46 16 5 C -0.49 -13.04 7.35 -34.44 -0.25 -13.29 16 6 H 0.06 1.66 7.81 -52.49 -0.41 1.25 16 7 C 0.06 1.53 5.22 -17.82 -0.09 1.44 16 8 N -0.90 -25.17 11.39 55.43 0.63 -24.54 16 9 Si 0.89 21.20 29.54 -169.99 -5.02 16.18 16 10 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 11 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 12 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 13 N -0.68 -13.88 6.19 -107.96 -0.67 -14.55 16 14 C 0.07 1.22 4.78 -3.82 -0.02 1.20 16 15 C -0.11 -1.62 2.65 -88.67 -0.23 -1.86 16 16 H 0.08 1.12 7.82 -51.93 -0.41 0.71 16 17 C -0.14 -1.86 6.55 -24.48 -0.16 -2.02 16 18 C 0.05 0.58 7.78 38.18 0.30 0.88 16 19 O -0.39 -5.56 11.02 -35.23 -0.39 -5.95 16 20 C 0.08 1.06 3.76 -26.01 -0.10 0.96 16 21 H 0.08 1.08 7.81 -51.93 -0.41 0.68 16 22 C -0.16 -1.89 9.44 37.16 0.35 -1.54 16 23 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 24 H 0.07 1.54 7.05 -51.93 -0.37 1.18 16 25 H 0.03 0.56 6.42 -51.93 -0.33 0.23 16 26 H 0.01 0.22 7.24 -51.93 -0.38 -0.16 16 27 H 0.09 2.40 6.25 -51.93 -0.32 2.07 16 28 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 29 H 0.32 6.34 6.54 -39.29 -0.26 6.08 16 30 H 0.02 0.36 7.23 -51.93 -0.38 -0.01 16 31 H 0.07 1.20 7.97 -51.93 -0.41 0.78 16 32 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 33 H 0.08 1.16 7.93 -51.93 -0.41 0.75 16 34 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 35 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 LS Contribution 297.46 15.07 4.48 4.48 Total: -1.00 -27.61 297.46 -7.71 -35.33 By element: Atomic # 1 Polarization: 10.63 SS G_CDS: -6.58 Total: 4.04 kcal Atomic # 6 Polarization: -14.82 SS G_CDS: -0.17 Total: -14.99 kcal Atomic # 7 Polarization: -39.05 SS G_CDS: -0.04 Total: -39.09 kcal Atomic # 8 Polarization: -5.56 SS G_CDS: -0.39 Total: -5.95 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.18 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -27.61 -7.71 -35.33 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000234039968.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.751 kcal (2) G-P(sol) polarization free energy of solvation -27.615 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.365 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.715 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.329 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.080 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds