Wall clock time and date at job start Sun Mar 29 2020 21:51:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52997 * 109.47627 * 2 1 4 4 H 1.08997 * 109.47447 * 174.08532 * 3 2 1 5 5 C 1.50698 * 109.46837 * 54.08664 * 3 2 1 6 6 H 1.07997 * 120.00162 * 239.99676 * 5 3 2 7 7 C 1.37879 * 120.00354 * 60.00260 * 5 3 2 8 8 N 1.31521 * 119.99424 * 359.97438 * 7 5 3 9 9 Si 1.86801 * 120.00453 * 179.97438 * 7 5 3 10 10 H 1.48499 * 109.47001 * 90.00050 * 9 7 5 11 11 H 1.48493 * 109.46985 * 210.00142 * 9 7 5 12 12 H 1.48497 * 109.47028 * 330.00255 * 9 7 5 13 13 N 1.46895 * 109.47337 * 294.08961 * 3 2 1 14 14 C 1.46904 * 110.99996 * 275.77918 * 13 3 2 15 15 C 1.53000 * 109.47259 * 176.23413 * 14 13 3 16 16 H 1.08999 * 110.75539 * 308.47614 * 15 14 13 17 17 C 1.55312 * 110.84618 * 72.16830 * 15 14 13 18 18 C 1.54943 * 100.94162 * 152.32331 * 17 15 14 19 19 O 1.43650 * 105.13526 * 323.55564 * 18 17 15 20 20 C 1.43233 * 109.97179 * 24.43031 * 19 18 17 21 21 H 1.09006 * 109.82873 * 238.77847 * 20 19 18 22 22 C 1.53001 * 109.90770 * 117.84464 * 20 19 18 23 23 H 1.08993 * 109.47345 * 178.55607 * 1 2 3 24 24 H 1.08997 * 109.46988 * 298.56044 * 1 2 3 25 25 H 1.08997 * 109.46769 * 58.55454 * 1 2 3 26 26 H 1.09005 * 109.47064 * 239.99910 * 2 1 3 27 27 H 1.09004 * 109.47052 * 120.00101 * 2 1 3 28 28 H 0.96997 * 119.99646 * 180.02562 * 8 7 5 29 29 H 1.00901 * 111.00211 * 39.72710 * 13 3 2 30 30 H 1.08999 * 109.46943 * 56.23462 * 14 13 3 31 31 H 1.09001 * 109.46690 * 296.23669 * 14 13 3 32 32 H 1.09003 * 111.12305 * 270.24183 * 17 15 14 33 33 H 1.08999 * 111.12346 * 34.40248 * 17 15 14 34 34 H 1.09001 * 110.30996 * 204.64315 * 18 17 15 35 35 H 1.09000 * 110.39487 * 82.51511 * 18 17 15 36 36 H 1.08998 * 109.46720 * 301.82016 * 22 20 19 37 37 H 1.09003 * 109.47161 * 61.81851 * 22 20 19 38 38 H 1.08998 * 109.47073 * 181.82149 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 3.1249 1.4442 0.1059 5 6 1.4218 2.1938 1.1507 6 1 0.8151 3.0670 0.9618 7 6 1.6309 1.7666 2.4449 8 7 2.3695 0.7030 2.6750 9 14 0.8651 2.6984 3.8714 10 1 -0.4772 2.1360 4.1663 11 1 1.7312 2.5669 5.0704 12 1 0.7326 4.1330 3.5113 13 7 1.6704 2.0926 -1.2643 14 6 2.6512 1.7938 -2.3164 15 6 2.1849 2.4082 -3.6377 16 1 1.1577 2.1175 -3.8577 17 6 2.3328 3.9540 -3.6111 18 6 2.5278 4.2569 -5.1181 19 8 3.3089 3.1620 -5.6226 20 6 3.1283 2.0087 -4.7926 21 1 4.0896 1.6882 -4.3907 22 6 2.5017 0.8744 -5.6060 23 1 -0.3634 -1.0273 -0.0259 24 1 -0.3633 0.4913 0.9026 25 1 -0.3633 0.5361 -0.8767 26 1 1.8933 -0.5139 -0.8900 27 1 1.8933 -0.5139 0.8900 28 1 2.5163 0.4022 3.5854 29 1 0.7406 1.8248 -1.5503 30 1 2.7438 0.7137 -2.4306 31 1 3.6185 2.2144 -2.0414 32 1 1.4290 4.4285 -3.2287 33 1 3.2068 4.2551 -3.0335 34 1 3.0646 5.1965 -5.2488 35 1 1.5637 4.2990 -5.6249 36 1 1.5487 1.2063 -6.0179 37 1 3.1722 0.5971 -6.4194 38 1 2.3377 0.0119 -4.9601 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000234039968.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:51:34 Heat of formation + Delta-G solvation = -81.376783 kcal Electronic energy + Delta-G solvation = -16478.990586 eV Core-core repulsion = 13933.892617 eV Total energy + Delta-G solvation = -2545.097969 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.66234 -38.27352 -35.13992 -33.48360 -32.35838 -31.57202 -28.74322 -27.22569 -25.22211 -24.40084 -22.43945 -21.51301 -21.12996 -18.19627 -17.54720 -16.97727 -16.62899 -16.03794 -15.49891 -15.29255 -14.97441 -14.59947 -14.35702 -14.29378 -13.69826 -13.49912 -12.97976 -12.92798 -12.77237 -12.73094 -12.44964 -12.34811 -12.05440 -11.88151 -11.69753 -11.62145 -11.47977 -11.28211 -10.92425 -10.45784 -10.42625 -8.90411 -8.04834 -6.13085 1.43214 1.45068 1.54678 2.46226 2.92429 3.24329 3.37956 3.74128 3.90557 4.12549 4.26234 4.33321 4.43004 4.50795 4.53328 4.60134 4.62392 4.73878 4.75989 4.79656 4.95939 5.00592 5.09029 5.12574 5.18445 5.25919 5.38316 5.39860 5.44261 5.69498 5.75561 5.85262 6.10705 6.33040 6.69087 6.87702 7.00830 7.54942 9.00760 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.039504 B = 0.006184 C = 0.005705 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 708.617380 B = 4526.561153 C = 4906.991176 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.139 4.139 3 C 0.221 3.779 4 H -0.006 1.006 5 C -0.499 4.499 6 H 0.053 0.947 7 C 0.012 3.988 8 N -0.922 5.922 9 Si 0.951 3.049 10 H -0.276 1.276 11 H -0.288 1.288 12 H -0.272 1.272 13 N -0.682 5.682 14 C 0.076 3.924 15 C -0.106 4.106 16 H 0.090 0.910 17 C -0.137 4.137 18 C 0.049 3.951 19 O -0.400 6.400 20 C 0.078 3.922 21 H 0.072 0.928 22 C -0.156 4.156 23 H 0.042 0.958 24 H 0.041 0.959 25 H 0.051 0.949 26 H 0.026 0.974 27 H 0.059 0.941 28 H 0.258 0.742 29 H 0.333 0.667 30 H 0.021 0.979 31 H 0.050 0.950 32 H 0.087 0.913 33 H 0.065 0.935 34 H 0.095 0.905 35 H 0.071 0.929 36 H 0.063 0.937 37 H 0.065 0.935 38 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.985 2.098 -13.419 13.727 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.179 4.179 3 C 0.112 3.888 4 H 0.012 0.988 5 C -0.537 4.537 6 H 0.072 0.928 7 C -0.186 4.186 8 N -0.563 5.563 9 Si 0.778 3.222 10 H -0.201 1.201 11 H -0.214 1.214 12 H -0.196 1.196 13 N -0.313 5.313 14 C -0.054 4.054 15 C -0.125 4.125 16 H 0.108 0.892 17 C -0.174 4.174 18 C -0.026 4.026 19 O -0.320 6.320 20 C 0.020 3.980 21 H 0.090 0.910 22 C -0.213 4.213 23 H 0.061 0.939 24 H 0.060 0.940 25 H 0.069 0.931 26 H 0.044 0.956 27 H 0.078 0.922 28 H 0.067 0.933 29 H 0.152 0.848 30 H 0.039 0.961 31 H 0.069 0.931 32 H 0.106 0.894 33 H 0.084 0.916 34 H 0.113 0.887 35 H 0.089 0.911 36 H 0.082 0.918 37 H 0.084 0.916 38 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -1.496 2.615 -13.289 13.626 hybrid contribution -0.359 -0.706 1.183 1.424 sum -1.855 1.908 -12.106 12.395 Atomic orbital electron populations 1.21442 0.95826 0.99326 1.00943 1.21951 0.96596 1.00033 0.99281 1.18931 0.93525 0.89521 0.86810 0.98801 1.21291 1.30212 1.11364 0.90875 0.92836 1.25603 0.96016 0.95931 1.01014 1.70022 1.40293 1.25345 1.20618 0.85659 0.78310 0.79240 0.79041 1.20143 1.21427 1.19626 1.60711 1.04790 1.62808 1.03010 1.21812 0.96061 0.96876 0.90657 1.22700 1.00069 0.96186 0.93514 0.89165 1.23143 1.03205 0.94828 0.96259 1.23514 0.96092 0.90276 0.92767 1.88362 1.69169 1.21468 1.53016 1.22748 0.98397 0.86927 0.89886 0.90983 1.22089 1.01281 0.97422 1.00512 0.93894 0.94019 0.93056 0.95575 0.92225 0.93273 0.84843 0.96098 0.93116 0.89394 0.91629 0.88737 0.91112 0.91799 0.91623 0.91050 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.80 9.39 71.98 0.68 -4.13 16 2 C -0.14 -6.39 5.50 30.59 0.17 -6.23 16 3 C 0.22 10.84 2.33 44.17 0.10 10.94 16 4 H -0.01 -0.33 7.86 -2.39 -0.02 -0.35 16 5 C -0.50 -26.82 7.35 25.60 0.19 -26.64 16 6 H 0.05 2.91 7.81 -2.91 -0.02 2.88 16 7 C 0.01 0.67 5.22 84.65 0.44 1.12 16 8 N -0.92 -52.62 11.39 21.45 0.24 -52.38 16 9 Si 0.95 43.54 29.54 68.60 2.03 45.56 16 10 H -0.28 -12.26 7.11 99.48 0.71 -11.55 16 11 H -0.29 -13.12 7.11 99.48 0.71 -12.41 16 12 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 13 N -0.68 -27.38 6.19 -495.46 -3.07 -30.44 16 14 C 0.08 2.58 4.78 86.30 0.41 2.99 16 15 C -0.11 -2.85 2.65 -9.53 -0.03 -2.88 16 16 H 0.09 2.28 7.82 -2.39 -0.02 2.26 16 17 C -0.14 -3.53 6.55 32.05 0.21 -3.32 16 18 C 0.05 1.10 7.78 72.65 0.56 1.67 16 19 O -0.40 -10.76 11.02 -148.98 -1.64 -12.40 16 20 C 0.08 1.99 3.76 31.06 0.12 2.11 16 21 H 0.07 1.91 7.81 -2.38 -0.02 1.90 16 22 C -0.16 -3.31 9.44 71.98 0.68 -2.63 16 23 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 24 H 0.04 1.89 7.05 -2.39 -0.02 1.87 16 25 H 0.05 1.83 6.42 -2.39 -0.02 1.82 16 26 H 0.03 1.09 7.24 -2.38 -0.02 1.07 16 27 H 0.06 3.15 6.25 -2.38 -0.01 3.14 16 28 H 0.26 14.15 8.31 -92.71 -0.77 13.38 16 29 H 0.33 12.43 6.54 -89.69 -0.59 11.84 16 30 H 0.02 0.72 7.23 -2.39 -0.02 0.70 16 31 H 0.05 1.87 7.97 -2.39 -0.02 1.85 16 32 H 0.09 2.22 8.14 -2.39 -0.02 2.20 16 33 H 0.06 1.88 7.93 -2.39 -0.02 1.86 16 34 H 0.09 1.83 8.14 -2.39 -0.02 1.81 16 35 H 0.07 1.37 8.14 -2.39 -0.02 1.36 16 36 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 37 H 0.06 1.30 8.14 -2.39 -0.02 1.29 16 38 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 Total: -1.00 -58.55 297.46 1.53 -57.02 By element: Atomic # 1 Polarization: 19.20 SS G_CDS: 0.43 Total: 19.63 kcal Atomic # 6 Polarization: -30.53 SS G_CDS: 3.54 Total: -26.99 kcal Atomic # 7 Polarization: -80.00 SS G_CDS: -2.82 Total: -82.82 kcal Atomic # 8 Polarization: -10.76 SS G_CDS: -1.64 Total: -12.40 kcal Atomic # 14 Polarization: 43.54 SS G_CDS: 2.03 Total: 45.56 kcal Total: -58.55 1.53 -57.02 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000234039968.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.353 kcal (2) G-P(sol) polarization free energy of solvation -58.552 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.905 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.528 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.024 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.377 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds