Wall clock time and date at job start Sun Mar 29 2020 22:13:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09003 * 109.86881 * 2 1 4 4 O 1.43746 * 109.88194 * 238.84061 * 2 1 3 5 5 C 1.44372 * 106.97725 * 214.06441 * 4 2 1 6 6 C 1.54992 * 103.49615 * 40.05804 * 5 4 2 7 7 C 1.54093 * 109.88185 * 121.00672 * 2 1 3 8 8 C 1.53000 * 110.48682 * 2.64532 * 7 2 1 9 9 N 1.46897 * 110.49269 * 240.13006 * 7 2 1 10 10 C 1.46903 * 111.00559 * 179.97438 * 9 7 2 11 11 C 1.53001 * 109.47241 * 180.02562 * 10 9 7 12 12 C 1.53003 * 109.47136 * 179.97438 * 11 10 9 13 13 C 1.50698 * 109.47196 * 180.02562 * 12 11 10 14 14 H 1.08000 * 119.99841 * 0.02562 * 13 12 11 15 15 C 1.37877 * 119.99960 * 180.02562 * 13 12 11 16 16 N 1.31514 * 119.99691 * 359.97438 * 15 13 12 17 17 Si 1.86795 * 120.00049 * 179.97438 * 15 13 12 18 18 H 1.48500 * 109.47026 * 60.00029 * 17 15 13 19 19 H 1.48499 * 109.47101 * 179.97438 * 17 15 13 20 20 H 1.48504 * 109.47214 * 300.00279 * 17 15 13 21 21 H 1.09002 * 109.47153 * 298.99138 * 1 2 3 22 22 H 1.09001 * 109.46832 * 178.99329 * 1 2 3 23 23 H 1.09004 * 109.47261 * 58.99310 * 1 2 3 24 24 H 1.09003 * 110.61774 * 281.55372 * 5 4 2 25 25 H 1.09002 * 110.75649 * 158.62590 * 5 4 2 26 26 H 1.08995 * 110.90926 * 204.78731 * 6 5 4 27 27 H 1.08996 * 110.93739 * 81.18756 * 6 5 4 28 28 H 1.09003 * 109.47209 * 60.00507 * 8 7 2 29 29 H 1.09007 * 109.47335 * 179.97438 * 8 7 2 30 30 H 1.08996 * 109.47119 * 300.00069 * 8 7 2 31 31 H 1.00899 * 111.00108 * 303.95855 * 9 7 2 32 32 H 1.08996 * 109.46757 * 300.00099 * 10 9 7 33 33 H 1.08998 * 109.47258 * 59.99892 * 10 9 7 34 34 H 1.08993 * 109.47055 * 300.00205 * 11 10 9 35 35 H 1.09003 * 109.46982 * 60.00503 * 11 10 9 36 36 H 1.09004 * 109.47085 * 300.00456 * 12 11 10 37 37 H 1.09001 * 109.46468 * 59.99713 * 12 11 10 38 38 H 0.96999 * 120.00038 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9004 1.0251 0.0000 4 8 2.0188 -0.6994 -1.1568 5 6 3.2379 -1.3651 -0.7629 6 6 2.9196 -1.8906 0.6600 7 6 2.0540 -0.7465 1.2420 8 6 0.8898 -1.3134 2.0569 9 7 2.8734 0.1472 2.0714 10 6 3.3786 -0.5534 3.2597 11 6 4.2248 0.4077 4.0971 12 6 4.7505 -0.3217 5.3350 13 6 5.5835 0.6251 6.1601 14 1 5.7236 1.6452 5.8343 15 6 6.1667 0.1890 7.3308 16 7 5.9957 -1.0531 7.7277 17 14 7.1999 1.3623 8.3531 18 1 6.3661 2.5162 8.7758 19 1 7.7099 0.6543 9.5547 20 1 8.3444 1.8495 7.5419 21 1 -0.3633 0.4981 0.8989 22 1 -0.3633 -1.0275 -0.0181 23 1 -0.3634 0.5294 -0.8808 24 1 4.0685 -0.6598 -0.7348 25 1 3.4612 -2.1925 -1.4365 26 1 3.8332 -2.0207 1.2400 27 1 2.3542 -2.8213 0.6141 28 1 0.3193 -2.0083 1.4406 29 1 1.2785 -1.8376 2.9300 30 1 0.2420 -0.4987 2.3804 31 1 3.6308 0.5441 1.5360 32 1 2.5386 -0.9105 3.8554 33 1 3.9902 -1.4006 2.9495 34 1 5.0648 0.7653 3.5016 35 1 3.6128 1.2546 4.4074 36 1 3.9102 -0.6790 5.9303 37 1 5.3623 -1.1689 5.0249 38 1 6.4063 -1.3601 8.5511 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000235440013.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:13:03 Heat of formation + Delta-G solvation = -61.525656 kcal Electronic energy + Delta-G solvation = -16177.921468 eV Core-core repulsion = 13633.684309 eV Total energy + Delta-G solvation = -2544.237159 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.27789 -36.27740 -33.89967 -32.46391 -31.46128 -29.81121 -27.57960 -26.38930 -24.47601 -22.94657 -21.66542 -20.10004 -19.14950 -16.69171 -16.29029 -15.93349 -15.62547 -14.90072 -14.54908 -14.28481 -13.85941 -13.67144 -12.88653 -12.73706 -12.32293 -12.14834 -11.92431 -11.85144 -11.53271 -11.24670 -11.11516 -10.97042 -10.81155 -10.65078 -10.48952 -10.42814 -9.74590 -9.66747 -9.33386 -9.06835 -8.34166 -8.22723 -5.99454 -4.01656 3.33907 3.38051 3.40816 3.77330 4.16387 4.46766 4.55885 4.70150 4.82744 5.04156 5.08618 5.27829 5.36326 5.44116 5.48220 5.57490 5.69106 5.69575 5.78819 5.83512 5.88964 5.95189 6.05041 6.07290 6.26401 6.36504 6.67004 6.70792 6.85387 7.12303 7.32953 7.56322 7.67902 7.82765 8.00643 8.43954 9.05269 9.62354 11.11967 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.053785 B = 0.004580 C = 0.004546 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 520.466736 B = 6112.440837 C = 6157.250474 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.081 3.919 3 H 0.076 0.924 4 O -0.378 6.378 5 C 0.048 3.952 6 C -0.190 4.190 7 C 0.086 3.914 8 C -0.137 4.137 9 N -0.674 5.674 10 C 0.055 3.945 11 C -0.107 4.107 12 C 0.023 3.977 13 C -0.520 4.520 14 H 0.054 0.946 15 C 0.056 3.944 16 N -0.897 5.897 17 Si 0.892 3.108 18 H -0.277 1.277 19 H -0.287 1.287 20 H -0.277 1.277 21 H 0.075 0.925 22 H 0.063 0.937 23 H 0.056 0.944 24 H 0.058 0.942 25 H 0.090 0.910 26 H 0.085 0.915 27 H 0.079 0.921 28 H 0.060 0.940 29 H 0.061 0.939 30 H 0.068 0.932 31 H 0.337 0.663 32 H 0.072 0.928 33 H 0.027 0.973 34 H 0.044 0.956 35 H 0.056 0.944 36 H 0.016 0.984 37 H 0.013 0.987 38 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.732 -1.025 -15.013 17.398 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.023 3.977 3 H 0.093 0.907 4 O -0.297 6.297 5 C -0.029 4.029 6 C -0.230 4.230 7 C -0.006 4.006 8 C -0.195 4.195 9 N -0.305 5.305 10 C -0.073 4.073 11 C -0.145 4.145 12 C -0.015 4.015 13 C -0.558 4.558 14 H 0.073 0.927 15 C -0.145 4.145 16 N -0.536 5.536 17 Si 0.720 3.280 18 H -0.202 1.202 19 H -0.213 1.213 20 H -0.203 1.203 21 H 0.094 0.906 22 H 0.082 0.918 23 H 0.075 0.925 24 H 0.077 0.923 25 H 0.108 0.892 26 H 0.103 0.897 27 H 0.098 0.902 28 H 0.079 0.921 29 H 0.080 0.920 30 H 0.087 0.913 31 H 0.155 0.845 32 H 0.090 0.910 33 H 0.045 0.955 34 H 0.063 0.937 35 H 0.075 0.925 36 H 0.034 0.966 37 H 0.031 0.969 38 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -9.335 -0.873 -14.736 17.466 hybrid contribution 1.542 -0.045 0.469 1.613 sum -7.793 -0.918 -14.267 16.282 Atomic orbital electron populations 1.21989 0.93566 1.02645 1.02267 1.22778 0.95292 0.95859 0.83815 0.90664 1.88863 1.39659 1.67794 1.33430 1.23464 0.87735 0.96302 0.95386 1.23927 1.01794 1.00192 0.97064 1.22273 0.94399 0.90861 0.93109 1.21968 0.96901 1.00912 0.99681 1.60724 1.26615 1.34241 1.08910 1.22238 0.98289 0.96106 0.90676 1.21630 0.97233 0.98145 0.97503 1.19053 0.95833 0.95489 0.91091 1.21217 1.30710 0.97397 1.06486 0.92738 1.25023 0.96634 0.95136 0.97669 1.69955 1.44817 1.15613 1.23241 0.86654 0.80653 0.81039 0.79633 1.20213 1.21301 1.20272 0.90633 0.91826 0.92453 0.92335 0.89155 0.89681 0.90219 0.92097 0.91971 0.91257 0.84457 0.90958 0.95456 0.93732 0.92542 0.96605 0.96872 0.92981 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.50 8.40 37.16 0.31 -1.19 16 2 C 0.08 0.96 3.82 -26.16 -0.10 0.86 16 3 H 0.08 0.93 7.92 -51.93 -0.41 0.52 16 4 O -0.38 -4.87 11.19 -35.23 -0.39 -5.26 16 5 C 0.05 0.53 7.72 38.21 0.29 0.82 16 6 C -0.19 -2.22 6.16 -24.72 -0.15 -2.37 16 7 C 0.09 1.06 0.88 -130.07 -0.11 0.95 16 8 C -0.14 -1.62 7.04 37.16 0.26 -1.35 16 9 N -0.67 -9.63 6.05 -98.42 -0.60 -10.23 16 10 C 0.05 0.93 5.01 -3.82 -0.02 0.91 16 11 C -0.11 -2.20 5.41 -26.73 -0.14 -2.35 16 12 C 0.02 0.59 4.97 -27.88 -0.14 0.45 16 13 C -0.52 -14.85 9.11 -34.44 -0.31 -15.16 16 14 H 0.05 1.51 7.74 -52.49 -0.41 1.11 16 15 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 16 N -0.90 -27.09 13.29 55.43 0.74 -26.36 16 17 Si 0.89 21.78 29.54 -169.99 -5.02 16.76 16 18 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 19 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 20 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 21 H 0.07 0.73 6.83 -51.93 -0.35 0.37 16 22 H 0.06 0.62 6.72 -51.93 -0.35 0.28 16 23 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 24 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 25 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 26 H 0.08 1.06 6.21 -51.93 -0.32 0.74 16 27 H 0.08 0.88 7.85 -51.93 -0.41 0.47 16 28 H 0.06 0.63 6.80 -51.93 -0.35 0.27 16 29 H 0.06 0.79 6.32 -51.93 -0.33 0.46 16 30 H 0.07 0.80 6.72 -51.93 -0.35 0.45 16 31 H 0.34 4.62 8.71 -39.29 -0.34 4.28 16 32 H 0.07 1.25 6.28 -51.93 -0.33 0.93 16 33 H 0.03 0.46 6.33 -51.93 -0.33 0.13 16 34 H 0.04 0.90 8.14 -51.93 -0.42 0.47 16 35 H 0.06 1.19 8.14 -51.93 -0.42 0.76 16 36 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 37 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16 38 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 LS Contribution 295.10 15.07 4.45 4.45 Total: -1.00 -30.09 295.10 -7.41 -37.50 By element: Atomic # 1 Polarization: 6.42 SS G_CDS: -6.37 Total: 0.05 kcal Atomic # 6 Polarization: -16.69 SS G_CDS: -0.21 Total: -16.91 kcal Atomic # 7 Polarization: -36.73 SS G_CDS: 0.14 Total: -36.58 kcal Atomic # 8 Polarization: -4.87 SS G_CDS: -0.39 Total: -5.26 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.76 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -30.09 -7.41 -37.50 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000235440013.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.029 kcal (2) G-P(sol) polarization free energy of solvation -30.085 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.114 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.412 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.497 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.526 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds