Wall clock time and date at job start Sun Mar 29 2020 22:13:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09004 * 109.87004 * 2 1 4 4 O 1.43739 * 109.88223 * 121.16497 * 2 1 3 5 5 C 1.44380 * 106.97820 * 145.93417 * 4 2 1 6 6 C 1.54994 * 103.49110 * 319.94499 * 5 4 2 7 7 C 1.54106 * 109.87837 * 238.99750 * 2 1 3 8 8 C 1.52998 * 110.48548 * 357.22024 * 7 2 1 9 9 N 1.46899 * 110.48738 * 119.86763 * 7 2 1 10 10 C 1.46896 * 110.99998 * 179.97438 * 9 7 2 11 11 C 1.52998 * 109.47430 * 179.97438 * 10 9 7 12 12 C 1.52998 * 109.47398 * 180.02562 * 11 10 9 13 13 C 1.50698 * 109.47497 * 180.02562 * 12 11 10 14 14 H 1.07998 * 119.99685 * 359.97438 * 13 12 11 15 15 C 1.37873 * 120.00289 * 179.97438 * 13 12 11 16 16 N 1.31517 * 120.00000 * 0.02562 * 15 13 12 17 17 Si 1.86798 * 120.00124 * 179.97438 * 15 13 12 18 18 H 1.48507 * 109.46884 * 60.00111 * 17 15 13 19 19 H 1.48497 * 109.47343 * 180.02562 * 17 15 13 20 20 H 1.48502 * 109.47410 * 300.00586 * 17 15 13 21 21 H 1.09001 * 109.46744 * 181.00335 * 1 2 3 22 22 H 1.08996 * 109.46890 * 301.00311 * 1 2 3 23 23 H 1.09002 * 109.47291 * 61.00305 * 1 2 3 24 24 H 1.08998 * 110.61673 * 78.44262 * 5 4 2 25 25 H 1.08994 * 110.62020 * 201.27896 * 5 4 2 26 26 H 1.09005 * 110.90701 * 278.82404 * 6 5 4 27 27 H 1.09000 * 110.91134 * 155.22318 * 6 5 4 28 28 H 1.09002 * 109.47095 * 60.00165 * 8 7 2 29 29 H 1.09005 * 109.46997 * 179.97438 * 8 7 2 30 30 H 1.09000 * 109.47402 * 299.99816 * 8 7 2 31 31 H 1.00895 * 111.00023 * 303.95186 * 9 7 2 32 32 H 1.09003 * 109.47385 * 300.00376 * 10 9 7 33 33 H 1.09005 * 109.46994 * 60.00012 * 10 9 7 34 34 H 1.08999 * 109.47442 * 300.00103 * 11 10 9 35 35 H 1.09005 * 109.46964 * 60.00065 * 11 10 9 36 36 H 1.09003 * 109.47327 * 300.00392 * 12 11 10 37 37 H 1.09005 * 109.47083 * 60.00048 * 12 11 10 38 38 H 0.96996 * 119.99647 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9005 1.0251 0.0000 4 8 2.0189 -0.6995 1.1566 5 6 3.2380 -1.3652 0.7627 6 6 2.9196 -1.8905 -0.6603 7 6 2.0540 -0.7465 -1.2422 8 6 0.8898 -1.3161 -2.0552 9 7 2.8733 0.1473 -2.0716 10 6 3.3794 -0.5534 -3.2593 11 6 4.2256 0.4077 -4.0966 12 6 4.7522 -0.3221 -5.3340 13 6 5.5861 0.6244 -6.1584 14 1 5.7261 1.6445 -5.8327 15 6 6.1703 0.1881 -7.3286 16 7 5.9994 -1.0541 -7.7255 17 14 7.2035 1.3615 -8.3509 18 1 8.3472 1.8496 -7.5391 19 1 7.7147 0.6532 -9.5518 20 1 6.3694 2.5148 -8.7746 21 1 -0.3633 -1.0275 0.0180 22 1 -0.3633 0.5293 0.8808 23 1 -0.3634 0.4982 -0.8988 24 1 4.0685 -0.6600 0.7346 25 1 3.4600 -2.1910 1.4386 26 1 2.3539 -2.8211 -0.6139 27 1 3.8332 -2.0207 -1.2404 28 1 0.2402 -0.5028 -2.3787 29 1 1.2786 -1.8395 -2.9289 30 1 0.3214 -2.0116 -1.4378 31 1 2.3564 0.9738 -2.3319 32 1 3.9913 -1.4002 -2.9483 33 1 2.5398 -0.9113 -3.8553 34 1 3.6134 1.2542 -4.4076 35 1 5.0652 0.7659 -3.5009 36 1 5.3643 -1.1688 -5.0234 37 1 3.9123 -0.6800 -5.9296 38 1 6.4101 -1.3609 -8.5489 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000235642216.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:13:06 Heat of formation + Delta-G solvation = -61.463854 kcal Electronic energy + Delta-G solvation = -16172.601503 eV Core-core repulsion = 13628.367024 eV Total energy + Delta-G solvation = -2544.234479 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.17163 -36.33790 -33.91382 -32.39901 -31.42310 -29.86038 -27.48029 -26.34160 -24.53002 -23.02663 -21.57851 -20.07836 -19.12161 -16.76087 -16.27678 -15.89457 -15.32546 -14.86279 -14.54532 -14.30865 -14.04115 -13.47582 -13.08250 -12.58668 -12.53332 -12.21591 -11.96287 -11.64629 -11.50510 -11.17764 -11.17042 -10.98242 -10.74440 -10.64498 -10.48345 -10.43386 -9.69205 -9.65423 -9.33133 -9.06731 -8.34066 -8.20929 -5.99404 -4.01607 3.33916 3.38071 3.40829 3.84027 4.20945 4.42987 4.47599 4.82527 4.88001 5.12368 5.21480 5.27210 5.36376 5.42428 5.46035 5.58208 5.67329 5.74861 5.80837 5.84198 5.92653 5.95586 5.99227 6.04978 6.21632 6.36573 6.68950 6.72657 6.89508 7.12577 7.33633 7.57663 7.68014 7.82913 8.00743 8.44049 9.05350 9.62425 11.12015 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.053683 B = 0.004580 C = 0.004546 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 521.456986 B = 6112.235008 C = 6158.053765 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.083 3.917 3 H 0.075 0.925 4 O -0.378 6.378 5 C 0.053 3.947 6 C -0.146 4.146 7 C 0.082 3.918 8 C -0.178 4.178 9 N -0.676 5.676 10 C 0.055 3.945 11 C -0.107 4.107 12 C 0.023 3.977 13 C -0.520 4.520 14 H 0.054 0.946 15 C 0.056 3.944 16 N -0.897 5.897 17 Si 0.892 3.108 18 H -0.277 1.277 19 H -0.287 1.287 20 H -0.277 1.277 21 H 0.064 0.936 22 H 0.058 0.942 23 H 0.069 0.931 24 H 0.065 0.935 25 H 0.087 0.913 26 H 0.075 0.925 27 H 0.090 0.910 28 H 0.059 0.941 29 H 0.064 0.936 30 H 0.063 0.937 31 H 0.339 0.661 32 H 0.068 0.932 33 H 0.030 0.970 34 H 0.044 0.956 35 H 0.055 0.945 36 H 0.015 0.985 37 H 0.013 0.987 38 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.808 -0.629 14.334 17.380 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.025 3.975 3 H 0.093 0.907 4 O -0.298 6.298 5 C -0.023 4.023 6 C -0.183 4.183 7 C -0.010 4.010 8 C -0.237 4.237 9 N -0.307 5.307 10 C -0.073 4.073 11 C -0.145 4.145 12 C -0.015 4.015 13 C -0.558 4.558 14 H 0.073 0.927 15 C -0.145 4.145 16 N -0.536 5.536 17 Si 0.720 3.280 18 H -0.202 1.202 19 H -0.213 1.213 20 H -0.203 1.203 21 H 0.083 0.917 22 H 0.077 0.923 23 H 0.088 0.912 24 H 0.084 0.916 25 H 0.105 0.895 26 H 0.093 0.907 27 H 0.109 0.891 28 H 0.078 0.922 29 H 0.083 0.917 30 H 0.082 0.918 31 H 0.157 0.843 32 H 0.087 0.913 33 H 0.048 0.952 34 H 0.063 0.937 35 H 0.074 0.926 36 H 0.034 0.966 37 H 0.031 0.969 38 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -9.282 -0.860 14.767 17.463 hybrid contribution -0.079 0.490 -1.484 1.565 sum -9.361 -0.370 13.283 16.254 Atomic orbital electron populations 1.22053 0.94100 1.02756 1.02054 1.22739 0.94302 0.96108 0.84325 0.90738 1.88826 1.39990 1.67795 1.33139 1.23464 0.87775 0.96232 0.94875 1.23237 1.01047 0.97343 0.96723 1.22255 0.91970 0.93071 0.93708 1.22606 0.98495 1.01679 1.00905 1.60778 1.39921 1.08139 1.21817 1.22222 0.97876 0.97950 0.89266 1.21625 0.98064 0.97476 0.97322 1.19053 0.95801 0.95618 0.91002 1.21217 1.30679 0.97409 1.06495 0.92741 1.25023 0.96620 0.95134 0.97685 1.69956 1.44823 1.15610 1.23243 0.86656 0.80696 0.81003 0.79635 1.20210 1.21301 1.20273 0.91707 0.92259 0.91188 0.91648 0.89464 0.90676 0.89146 0.92160 0.91732 0.91832 0.84269 0.91325 0.95173 0.93680 0.92613 0.96638 0.96855 0.92984 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.50 8.40 37.16 0.31 -1.19 16 2 C 0.08 1.00 3.82 -26.15 -0.10 0.90 16 3 H 0.07 0.92 7.93 -51.93 -0.41 0.51 16 4 O -0.38 -5.02 11.19 -35.23 -0.39 -5.42 16 5 C 0.05 0.62 7.72 38.21 0.29 0.92 16 6 C -0.15 -1.77 6.17 -24.73 -0.15 -1.92 16 7 C 0.08 1.01 0.88 -130.07 -0.11 0.90 16 8 C -0.18 -2.03 7.04 37.16 0.26 -1.76 16 9 N -0.68 -9.59 6.03 -98.42 -0.59 -10.18 16 10 C 0.05 0.93 5.01 -3.83 -0.02 0.91 16 11 C -0.11 -2.20 5.41 -26.73 -0.14 -2.34 16 12 C 0.02 0.59 4.97 -27.88 -0.14 0.45 16 13 C -0.52 -14.84 9.11 -34.44 -0.31 -15.16 16 14 H 0.05 1.51 7.74 -52.49 -0.41 1.11 16 15 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 16 N -0.90 -27.10 13.29 55.43 0.74 -26.36 16 17 Si 0.89 21.78 29.54 -169.99 -5.02 16.76 16 18 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 19 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 20 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 21 H 0.06 0.63 6.71 -51.93 -0.35 0.28 16 22 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 23 H 0.07 0.61 6.83 -51.93 -0.35 0.26 16 24 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 25 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 26 H 0.07 0.84 7.85 -51.93 -0.41 0.43 16 27 H 0.09 1.19 6.21 -51.93 -0.32 0.87 16 28 H 0.06 0.64 6.72 -51.93 -0.35 0.29 16 29 H 0.06 0.81 6.33 -51.93 -0.33 0.48 16 30 H 0.06 0.65 6.80 -51.93 -0.35 0.30 16 31 H 0.34 4.53 8.75 -39.29 -0.34 4.18 16 32 H 0.07 1.18 6.33 -51.93 -0.33 0.85 16 33 H 0.03 0.51 6.29 -51.93 -0.33 0.18 16 34 H 0.04 0.91 8.14 -51.93 -0.42 0.48 16 35 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 36 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 37 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 38 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 LS Contribution 295.15 15.07 4.45 4.45 Total: -1.00 -30.16 295.15 -7.41 -37.57 By element: Atomic # 1 Polarization: 6.33 SS G_CDS: -6.37 Total: -0.05 kcal Atomic # 6 Polarization: -16.56 SS G_CDS: -0.21 Total: -16.77 kcal Atomic # 7 Polarization: -36.69 SS G_CDS: 0.14 Total: -36.54 kcal Atomic # 8 Polarization: -5.02 SS G_CDS: -0.39 Total: -5.42 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.76 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -30.16 -7.41 -37.57 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000235642216.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.896 kcal (2) G-P(sol) polarization free energy of solvation -30.157 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.053 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.411 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.568 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.464 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds