Wall clock time and date at job start Sun Mar 29 2020 22:13:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09004 * 109.87004 * 2 1 4 4 O 1.43739 * 109.88223 * 121.16497 * 2 1 3 5 5 C 1.44380 * 106.97820 * 145.93417 * 4 2 1 6 6 C 1.54994 * 103.49110 * 319.94499 * 5 4 2 7 7 C 1.54106 * 109.87837 * 238.99750 * 2 1 3 8 8 C 1.52998 * 110.48548 * 357.22024 * 7 2 1 9 9 N 1.46899 * 110.48738 * 119.86763 * 7 2 1 10 10 C 1.46896 * 110.99998 * 179.97438 * 9 7 2 11 11 C 1.52998 * 109.47430 * 179.97438 * 10 9 7 12 12 C 1.52998 * 109.47398 * 180.02562 * 11 10 9 13 13 C 1.50698 * 109.47497 * 180.02562 * 12 11 10 14 14 H 1.07998 * 119.99685 * 359.97438 * 13 12 11 15 15 C 1.37873 * 120.00289 * 179.97438 * 13 12 11 16 16 N 1.31517 * 120.00000 * 0.02562 * 15 13 12 17 17 Si 1.86798 * 120.00124 * 179.97438 * 15 13 12 18 18 H 1.48507 * 109.46884 * 60.00111 * 17 15 13 19 19 H 1.48497 * 109.47343 * 180.02562 * 17 15 13 20 20 H 1.48502 * 109.47410 * 300.00586 * 17 15 13 21 21 H 1.09001 * 109.46744 * 181.00335 * 1 2 3 22 22 H 1.08996 * 109.46890 * 301.00311 * 1 2 3 23 23 H 1.09002 * 109.47291 * 61.00305 * 1 2 3 24 24 H 1.08998 * 110.61673 * 78.44262 * 5 4 2 25 25 H 1.08994 * 110.62020 * 201.27896 * 5 4 2 26 26 H 1.09005 * 110.90701 * 278.82404 * 6 5 4 27 27 H 1.09000 * 110.91134 * 155.22318 * 6 5 4 28 28 H 1.09002 * 109.47095 * 60.00165 * 8 7 2 29 29 H 1.09005 * 109.46997 * 179.97438 * 8 7 2 30 30 H 1.09000 * 109.47402 * 299.99816 * 8 7 2 31 31 H 1.00895 * 111.00023 * 303.95186 * 9 7 2 32 32 H 1.09003 * 109.47385 * 300.00376 * 10 9 7 33 33 H 1.09005 * 109.46994 * 60.00012 * 10 9 7 34 34 H 1.08999 * 109.47442 * 300.00103 * 11 10 9 35 35 H 1.09005 * 109.46964 * 60.00065 * 11 10 9 36 36 H 1.09003 * 109.47327 * 300.00392 * 12 11 10 37 37 H 1.09005 * 109.47083 * 60.00048 * 12 11 10 38 38 H 0.96996 * 119.99647 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9005 1.0251 0.0000 4 8 2.0189 -0.6995 1.1566 5 6 3.2380 -1.3652 0.7627 6 6 2.9196 -1.8905 -0.6603 7 6 2.0540 -0.7465 -1.2422 8 6 0.8898 -1.3161 -2.0552 9 7 2.8733 0.1473 -2.0716 10 6 3.3794 -0.5534 -3.2593 11 6 4.2256 0.4077 -4.0966 12 6 4.7522 -0.3221 -5.3340 13 6 5.5861 0.6244 -6.1584 14 1 5.7261 1.6445 -5.8327 15 6 6.1703 0.1881 -7.3286 16 7 5.9994 -1.0541 -7.7255 17 14 7.2035 1.3615 -8.3509 18 1 8.3472 1.8496 -7.5391 19 1 7.7147 0.6532 -9.5518 20 1 6.3694 2.5148 -8.7746 21 1 -0.3633 -1.0275 0.0180 22 1 -0.3633 0.5293 0.8808 23 1 -0.3634 0.4982 -0.8988 24 1 4.0685 -0.6600 0.7346 25 1 3.4600 -2.1910 1.4386 26 1 2.3539 -2.8211 -0.6139 27 1 3.8332 -2.0207 -1.2404 28 1 0.2402 -0.5028 -2.3787 29 1 1.2786 -1.8395 -2.9289 30 1 0.3214 -2.0116 -1.4378 31 1 2.3564 0.9738 -2.3319 32 1 3.9913 -1.4002 -2.9483 33 1 2.5398 -0.9113 -3.8553 34 1 3.6134 1.2542 -4.4076 35 1 5.0652 0.7659 -3.5009 36 1 5.3643 -1.1688 -5.0234 37 1 3.9123 -0.6800 -5.9296 38 1 6.4101 -1.3609 -8.5489 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000235642216.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:13:06 Heat of formation + Delta-G solvation = -81.547263 kcal Electronic energy + Delta-G solvation = -16173.472385 eV Core-core repulsion = 13628.367024 eV Total energy + Delta-G solvation = -2545.105361 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.16026 -37.59771 -35.68751 -33.97013 -32.56770 -31.28534 -28.44090 -28.01011 -25.72589 -24.47177 -22.91200 -21.69061 -20.13425 -18.47214 -17.79079 -16.92083 -16.52313 -16.27885 -16.19946 -15.47763 -15.08684 -14.78222 -14.38328 -14.07190 -13.80110 -13.50855 -13.20211 -13.19289 -12.74877 -12.57680 -12.53025 -12.30125 -12.14255 -12.00486 -11.93786 -11.54855 -11.44714 -11.32215 -11.05196 -10.61609 -10.54863 -9.38316 -8.20203 -6.31275 1.40140 1.43119 1.51124 2.40993 2.90837 3.10898 3.12995 3.47331 3.87637 3.93812 4.17461 4.26461 4.29835 4.38529 4.40229 4.55515 4.61417 4.69861 4.76461 4.80968 4.87643 4.94205 4.98654 5.06229 5.08701 5.16517 5.19592 5.25862 5.38130 5.52016 5.74767 5.84457 5.86095 6.13808 6.27514 6.45546 6.85499 7.38071 8.91478 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.053683 B = 0.004580 C = 0.004546 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 521.456986 B = 6112.235008 C = 6158.053765 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.082 3.918 3 H 0.069 0.931 4 O -0.391 6.391 5 C 0.053 3.947 6 C -0.148 4.148 7 C 0.080 3.920 8 C -0.174 4.174 9 N -0.676 5.676 10 C 0.071 3.929 11 C -0.092 4.092 12 C 0.026 3.974 13 C -0.545 4.545 14 H 0.059 0.941 15 C 0.000 4.000 16 N -0.934 5.934 17 Si 0.965 3.035 18 H -0.267 1.267 19 H -0.282 1.282 20 H -0.267 1.267 21 H 0.067 0.933 22 H 0.063 0.937 23 H 0.082 0.918 24 H 0.057 0.943 25 H 0.107 0.893 26 H 0.086 0.914 27 H 0.077 0.923 28 H 0.070 0.930 29 H 0.049 0.951 30 H 0.077 0.923 31 H 0.346 0.654 32 H 0.062 0.938 33 H 0.030 0.970 34 H 0.050 0.950 35 H 0.050 0.950 36 H -0.010 1.010 37 H -0.009 1.009 38 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.345 0.231 14.847 18.097 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.024 3.976 3 H 0.087 0.913 4 O -0.311 6.311 5 C -0.024 4.024 6 C -0.186 4.186 7 C -0.011 4.011 8 C -0.233 4.233 9 N -0.308 5.308 10 C -0.057 4.057 11 C -0.130 4.130 12 C -0.011 4.011 13 C -0.582 4.582 14 H 0.077 0.923 15 C -0.198 4.198 16 N -0.574 5.574 17 Si 0.789 3.211 18 H -0.192 1.192 19 H -0.208 1.208 20 H -0.191 1.191 21 H 0.086 0.914 22 H 0.082 0.918 23 H 0.101 0.899 24 H 0.076 0.924 25 H 0.125 0.875 26 H 0.105 0.895 27 H 0.095 0.905 28 H 0.089 0.911 29 H 0.068 0.932 30 H 0.096 0.904 31 H 0.165 0.835 32 H 0.081 0.919 33 H 0.048 0.952 34 H 0.069 0.931 35 H 0.069 0.931 36 H 0.009 0.991 37 H 0.009 0.991 38 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -9.831 0.011 15.299 18.185 hybrid contribution 0.081 0.199 -1.608 1.622 sum -9.750 0.210 13.691 16.809 Atomic orbital electron populations 1.22043 0.92316 1.03240 1.02958 1.22797 0.95680 0.95541 0.83554 0.91268 1.88818 1.40415 1.68023 1.33843 1.23531 0.87162 0.96577 0.95085 1.23263 1.00620 0.97887 0.96795 1.22330 0.92134 0.92927 0.93731 1.22568 0.98232 1.02157 1.00301 1.60672 1.41048 1.08552 1.20491 1.21882 0.97256 0.96817 0.89795 1.21372 0.98418 0.97734 0.95502 1.18955 0.94447 0.94966 0.92765 1.21673 1.31260 0.98036 1.07279 0.92308 1.25975 0.97865 0.96901 0.99029 1.70088 1.45859 1.17586 1.23847 0.85510 0.79014 0.78768 0.77818 1.19235 1.20768 1.19141 0.91387 0.91751 0.89949 0.92424 0.87514 0.89523 0.90483 0.91126 0.93196 0.90436 0.83513 0.91930 0.95174 0.93104 0.93095 0.99123 0.99075 0.92768 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.56 8.40 71.98 0.60 -1.95 16 2 C 0.08 1.82 3.82 30.97 0.12 1.94 16 3 H 0.07 1.60 7.93 -2.38 -0.02 1.58 16 4 O -0.39 -9.74 11.19 -148.98 -1.67 -11.41 16 5 C 0.05 1.17 7.72 72.66 0.56 1.73 16 6 C -0.15 -3.43 6.17 31.89 0.20 -3.23 16 7 C 0.08 1.87 0.88 4.52 0.00 1.87 16 8 C -0.17 -3.64 7.04 71.98 0.51 -3.13 16 9 N -0.68 -18.49 6.03 -465.30 -2.81 -21.29 16 10 C 0.07 2.38 5.01 86.30 0.43 2.82 16 11 C -0.09 -3.80 5.41 30.59 0.17 -3.63 16 12 C 0.03 1.40 4.97 29.85 0.15 1.55 16 13 C -0.54 -31.36 9.11 25.60 0.23 -31.12 16 14 H 0.06 3.25 7.74 -2.91 -0.02 3.23 16 15 C 0.00 0.00 5.46 84.65 0.46 0.46 16 16 N -0.93 -57.16 13.29 21.45 0.28 -56.88 16 17 Si 0.96 44.47 29.54 68.60 2.03 46.49 16 18 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 19 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 20 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 21 H 0.07 1.13 6.71 -2.39 -0.02 1.12 16 22 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 23 H 0.08 1.21 6.83 -2.39 -0.02 1.19 16 24 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 25 H 0.11 1.92 8.14 -2.39 -0.02 1.90 16 26 H 0.09 1.79 7.85 -2.38 -0.02 1.77 16 27 H 0.08 2.00 6.21 -2.39 -0.01 1.99 16 28 H 0.07 1.32 6.72 -2.39 -0.02 1.31 16 29 H 0.05 1.20 6.33 -2.38 -0.02 1.18 16 30 H 0.08 1.41 6.80 -2.39 -0.02 1.39 16 31 H 0.35 8.71 8.75 -89.70 -0.79 7.93 16 32 H 0.06 2.18 6.33 -2.39 -0.02 2.16 16 33 H 0.03 1.01 6.29 -2.38 -0.01 1.00 16 34 H 0.05 2.01 8.14 -2.39 -0.02 2.00 16 35 H 0.05 2.13 8.14 -2.38 -0.02 2.11 16 36 H -0.01 -0.55 8.14 -2.39 -0.02 -0.57 16 37 H -0.01 -0.52 8.14 -2.38 -0.02 -0.54 16 38 H 0.26 15.16 8.31 -92.71 -0.77 14.39 16 Total: -1.00 -64.00 295.15 1.52 -62.48 By element: Atomic # 1 Polarization: 13.07 SS G_CDS: 0.24 Total: 13.31 kcal Atomic # 6 Polarization: -36.14 SS G_CDS: 3.43 Total: -32.71 kcal Atomic # 7 Polarization: -75.65 SS G_CDS: -2.52 Total: -78.17 kcal Atomic # 8 Polarization: -9.74 SS G_CDS: -1.67 Total: -11.41 kcal Atomic # 14 Polarization: 44.47 SS G_CDS: 2.03 Total: 46.49 kcal Total: -64.00 1.52 -62.48 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000235642216.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.066 kcal (2) G-P(sol) polarization free energy of solvation -63.997 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.063 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.516 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.482 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.547 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds