Wall clock time and date at job start Sun Mar 29 2020 21:47:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52999 * 109.47164 * 2 1 4 4 H 1.09000 * 109.47528 * 303.42497 * 3 2 1 5 5 C 1.50703 * 109.47012 * 183.42398 * 3 2 1 6 6 H 1.08000 * 120.00015 * 244.34334 * 5 3 2 7 7 C 1.37883 * 119.99995 * 64.34640 * 5 3 2 8 8 N 1.31510 * 120.00212 * 192.05983 * 7 5 3 9 9 Si 1.86799 * 119.99900 * 12.06313 * 7 5 3 10 10 H 1.48500 * 109.47231 * 94.81834 * 9 7 5 11 11 H 1.48499 * 109.47193 * 214.82220 * 9 7 5 12 12 H 1.48499 * 109.47153 * 334.82023 * 9 7 5 13 13 N 1.46901 * 109.47125 * 63.42709 * 3 2 1 14 14 C 1.46844 * 110.99029 * 212.17819 * 13 3 2 15 15 C 1.53046 * 109.51321 * 174.14765 * 14 13 3 16 16 C 1.53120 * 109.27646 * 59.18630 * 15 14 13 17 17 C 1.53123 * 109.15919 * 302.34768 * 16 15 14 18 18 C 1.46852 * 110.99732 * 87.97499 * 13 3 2 19 19 H 1.08992 * 109.46292 * 65.84110 * 18 13 3 20 20 C 1.52993 * 109.46663 * 305.85472 * 18 13 3 21 21 O 1.42906 * 109.47317 * 297.59068 * 20 18 13 22 22 H 1.08995 * 109.47302 * 184.94821 * 1 2 3 23 23 H 1.08999 * 109.47235 * 304.95615 * 1 2 3 24 24 H 1.09006 * 109.46649 * 64.95318 * 1 2 3 25 25 H 1.09007 * 109.47405 * 240.00285 * 2 1 3 26 26 H 1.09003 * 109.47412 * 120.00256 * 2 1 3 27 27 H 0.96999 * 120.00138 * 179.97438 * 8 7 5 28 28 H 1.08997 * 109.46061 * 54.14311 * 14 13 3 29 29 H 1.08989 * 109.46531 * 294.15865 * 14 13 3 30 30 H 1.09000 * 109.50276 * 299.24614 * 15 14 13 31 31 H 1.08998 * 109.50476 * 179.12410 * 15 14 13 32 32 H 1.08997 * 109.52668 * 182.43950 * 16 15 14 33 33 H 1.09007 * 109.57612 * 62.28128 * 16 15 14 34 34 H 1.08992 * 109.50223 * 297.70761 * 17 16 15 35 35 H 1.09007 * 109.53406 * 177.61527 * 17 16 15 36 36 H 1.09000 * 109.47013 * 57.58438 * 20 18 13 37 37 H 1.08998 * 109.47225 * 177.58595 * 20 18 13 38 38 H 0.96697 * 114.00026 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6274 1.9738 -0.8577 5 6 3.5446 1.4433 -0.0849 6 1 4.1315 1.8317 0.7344 7 6 4.1720 0.9482 -1.2084 8 7 5.4683 0.7272 -1.1942 9 14 3.1807 0.5916 -2.7510 10 1 3.2428 1.7633 -3.6613 11 1 3.7439 -0.5988 -3.4372 12 1 1.7672 0.3268 -2.3808 13 7 1.6191 2.1107 1.2387 14 6 1.3805 3.5414 1.0097 15 6 0.8059 4.1736 2.2795 16 6 1.7947 3.9800 3.4325 17 6 2.0635 2.4840 3.6183 18 6 2.6016 1.9009 2.3098 19 1 3.5358 2.3975 2.0480 20 6 2.8527 0.4019 2.4849 21 8 1.6400 -0.2410 2.8825 22 1 -0.3634 -1.0238 0.0886 23 1 -0.3633 0.5888 0.8422 24 1 -0.3633 0.4351 -0.9311 25 1 1.8934 -0.5138 -0.8900 26 1 1.8934 -0.5139 0.8900 27 1 5.9096 0.3786 -1.9845 28 1 0.6726 3.6649 0.1902 29 1 2.3207 4.0300 0.7542 30 1 -0.1411 3.6946 2.5280 31 1 0.6435 5.2386 2.1144 32 1 1.3707 4.3905 4.3489 33 1 2.7291 4.4921 3.2022 34 1 1.1363 1.9785 3.8880 35 1 2.7992 2.3415 4.4100 36 1 3.1959 -0.0217 1.5410 37 1 3.6134 0.2479 3.2502 38 1 1.7249 -1.1955 3.0119 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000251317684.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:47:23 Heat of formation + Delta-G solvation = -56.930137 kcal Electronic energy + Delta-G solvation = -17747.709995 eV Core-core repulsion = 15203.672113 eV Total energy + Delta-G solvation = -2544.037883 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.69757 -37.06167 -36.35293 -34.04187 -32.41773 -32.12205 -28.83715 -27.16726 -24.96353 -23.74162 -22.42052 -21.29127 -20.56768 -18.74584 -17.92121 -17.10202 -16.38404 -15.90380 -15.23813 -15.09196 -14.91486 -14.58492 -14.40382 -13.89217 -13.84732 -13.63626 -13.24431 -13.09386 -12.65195 -12.49514 -12.31329 -12.13617 -11.89588 -11.46090 -11.30184 -11.23227 -11.16989 -11.02825 -10.73462 -10.54709 -10.33775 -8.74045 -8.28218 -6.26701 1.30977 1.37782 1.47670 2.35875 3.06398 3.30642 3.72760 4.03222 4.10135 4.15497 4.43767 4.56161 4.58645 4.66446 4.67577 4.72813 4.84687 4.87114 4.97890 5.03385 5.05707 5.14863 5.19172 5.28971 5.32257 5.33222 5.41657 5.51402 5.58177 5.68009 5.76994 5.84930 6.23700 6.49095 6.70672 6.82298 7.13699 7.39584 8.85867 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.026782 B = 0.011337 C = 0.010952 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1045.236230 B = 2469.263343 C = 2555.900900 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.125 4.125 3 C 0.186 3.814 4 H 0.013 0.987 5 C -0.540 4.540 6 H 0.055 0.945 7 C 0.027 3.973 8 N -0.940 5.940 9 Si 0.912 3.088 10 H -0.287 1.287 11 H -0.290 1.290 12 H -0.223 1.223 13 N -0.506 5.506 14 C 0.052 3.948 15 C -0.105 4.105 16 C -0.117 4.117 17 C -0.101 4.101 18 C 0.100 3.900 19 H 0.026 0.974 20 C 0.078 3.922 21 O -0.559 6.559 22 H 0.049 0.951 23 H 0.062 0.938 24 H 0.029 0.971 25 H 0.029 0.971 26 H 0.082 0.918 27 H 0.262 0.738 28 H 0.065 0.935 29 H 0.006 0.994 30 H 0.070 0.930 31 H 0.078 0.922 32 H 0.082 0.918 33 H 0.047 0.953 34 H 0.071 0.929 35 H 0.062 0.938 36 H 0.063 0.937 37 H 0.033 0.967 38 H 0.379 0.621 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.494 1.500 7.274 12.054 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.162 4.162 3 C 0.078 3.922 4 H 0.031 0.969 5 C -0.578 4.578 6 H 0.073 0.927 7 C -0.172 4.172 8 N -0.580 5.580 9 Si 0.738 3.262 10 H -0.214 1.214 11 H -0.216 1.216 12 H -0.146 1.146 13 N -0.230 5.230 14 C -0.077 4.077 15 C -0.142 4.142 16 C -0.155 4.155 17 C -0.139 4.139 18 C -0.009 4.009 19 H 0.043 0.957 20 C 0.001 3.999 21 O -0.365 6.365 22 H 0.068 0.932 23 H 0.081 0.919 24 H 0.048 0.952 25 H 0.048 0.952 26 H 0.100 0.900 27 H 0.071 0.929 28 H 0.083 0.917 29 H 0.025 0.975 30 H 0.089 0.911 31 H 0.096 0.904 32 H 0.100 0.900 33 H 0.065 0.935 34 H 0.090 0.910 35 H 0.080 0.920 36 H 0.081 0.919 37 H 0.051 0.949 38 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges -10.037 1.845 7.290 12.541 hybrid contribution 1.577 -0.365 -1.484 2.196 sum -8.460 1.479 5.806 10.367 Atomic orbital electron populations 1.21524 0.95748 1.00490 1.00499 1.22198 0.95767 0.97442 1.00832 1.19525 0.91671 0.92689 0.88352 0.96912 1.21996 0.92469 1.40219 1.03129 0.92726 1.25643 0.95316 0.94741 1.01460 1.70082 1.11273 1.46443 1.30184 0.86447 0.82386 0.77311 0.80100 1.21364 1.21589 1.14563 1.62282 1.43885 1.10286 1.06527 1.22115 0.98145 0.88908 0.98518 1.21527 0.98950 1.00170 0.93586 1.21573 0.98959 0.95876 0.99074 1.21522 1.01420 0.95738 0.95252 1.21436 0.93201 0.94183 0.92084 0.95664 1.22378 0.85677 0.93234 0.98637 1.86518 1.33767 1.25228 1.90966 0.93222 0.91853 0.95193 0.95202 0.90034 0.92872 0.91655 0.97522 0.91097 0.90356 0.89961 0.93463 0.91029 0.91973 0.91926 0.94903 0.77361 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.49 9.85 71.98 0.71 -3.79 16 2 C -0.12 -5.24 4.22 30.59 0.13 -5.11 16 3 C 0.19 8.52 1.22 44.17 0.05 8.57 16 4 H 0.01 0.62 6.37 -2.39 -0.02 0.61 16 5 C -0.54 -29.07 6.78 25.60 0.17 -28.90 16 6 H 0.05 3.24 5.19 -2.91 -0.02 3.22 16 7 C 0.03 1.52 5.38 84.66 0.46 1.97 16 8 N -0.94 -57.00 13.96 21.45 0.30 -56.70 16 9 Si 0.91 43.37 25.74 68.60 1.77 45.14 16 10 H -0.29 -13.69 7.11 99.48 0.71 -12.98 16 11 H -0.29 -13.74 7.11 99.48 0.71 -13.03 16 12 H -0.22 -9.77 5.25 99.48 0.52 -9.25 16 13 N -0.51 -20.41 3.59 -850.40 -3.06 -23.47 16 14 C 0.05 1.89 5.34 86.33 0.46 2.35 16 15 C -0.10 -2.98 6.09 30.65 0.19 -2.79 16 16 C -0.12 -3.27 6.00 30.68 0.18 -3.09 16 17 C -0.10 -3.23 5.21 30.65 0.16 -3.07 16 18 C 0.10 3.94 1.59 44.93 0.07 4.01 16 19 H 0.03 1.19 5.95 -2.39 -0.01 1.18 16 20 C 0.08 3.00 5.36 71.98 0.39 3.39 16 21 O -0.56 -18.35 11.13 -148.98 -1.66 -20.01 16 22 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 23 H 0.06 2.30 7.57 -2.39 -0.02 2.28 16 24 H 0.03 1.04 8.14 -2.38 -0.02 1.02 16 25 H 0.03 1.32 4.57 -2.38 -0.01 1.31 16 26 H 0.08 3.35 3.46 -2.39 -0.01 3.34 16 27 H 0.26 15.11 8.31 -92.71 -0.77 14.34 16 28 H 0.06 2.31 7.90 -2.39 -0.02 2.29 16 29 H 0.01 0.27 8.14 -2.39 -0.02 0.25 16 30 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 31 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 32 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 33 H 0.05 1.39 8.14 -2.38 -0.02 1.37 16 34 H 0.07 2.32 7.60 -2.39 -0.02 2.31 16 35 H 0.06 1.83 8.14 -2.38 -0.02 1.81 16 36 H 0.06 2.84 3.99 -2.39 -0.01 2.83 16 37 H 0.03 1.18 8.14 -2.39 -0.02 1.16 16 38 H 0.38 9.20 9.12 -74.06 -0.68 8.53 16 Total: -1.00 -62.26 274.24 0.51 -61.75 By element: Atomic # 1 Polarization: 19.55 SS G_CDS: 0.19 Total: 19.74 kcal Atomic # 6 Polarization: -29.42 SS G_CDS: 2.97 Total: -26.45 kcal Atomic # 7 Polarization: -77.42 SS G_CDS: -2.76 Total: -80.17 kcal Atomic # 8 Polarization: -18.35 SS G_CDS: -1.66 Total: -20.01 kcal Atomic # 14 Polarization: 43.37 SS G_CDS: 1.77 Total: 45.14 kcal Total: -62.26 0.51 -61.75 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000251317684.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.824 kcal (2) G-P(sol) polarization free energy of solvation -62.261 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.438 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.507 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.754 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.930 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds