Wall clock time and date at job start Sun Mar 29 2020 21:47:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52994 * 109.47275 * 2 1 4 4 H 1.09000 * 109.47546 * 55.00093 * 3 2 1 5 5 C 1.50701 * 109.47017 * 174.99840 * 3 2 1 6 6 H 1.08000 * 119.99946 * 119.99909 * 5 3 2 7 7 C 1.37877 * 120.00282 * 299.99470 * 5 3 2 8 8 N 1.31514 * 119.99706 * 0.02562 * 7 5 3 9 9 Si 1.86800 * 120.00159 * 179.97438 * 7 5 3 10 10 H 1.48499 * 109.47167 * 0.02562 * 9 7 5 11 11 H 1.48505 * 109.46847 * 120.00439 * 9 7 5 12 12 H 1.48498 * 109.47202 * 240.00429 * 9 7 5 13 13 N 1.46904 * 109.47231 * 294.99734 * 3 2 1 14 14 C 1.46851 * 110.99700 * 296.98557 * 13 3 2 15 15 C 1.53040 * 109.51186 * 174.16689 * 14 13 3 16 16 C 1.53094 * 109.29323 * 59.17937 * 15 14 13 17 17 C 1.53120 * 109.15773 * 302.34101 * 16 15 14 18 18 C 1.46849 * 110.99892 * 172.77497 * 13 3 2 19 19 H 1.08999 * 109.46434 * 65.83602 * 18 13 3 20 20 C 1.52994 * 109.46375 * 305.85241 * 18 13 3 21 21 O 1.42900 * 109.47320 * 296.60088 * 20 18 13 22 22 H 1.08997 * 109.47394 * 300.00490 * 1 2 3 23 23 H 1.09002 * 109.47059 * 60.00368 * 1 2 3 24 24 H 1.09002 * 109.47379 * 179.97438 * 1 2 3 25 25 H 1.08997 * 109.47394 * 239.99510 * 2 1 3 26 26 H 1.09008 * 109.47058 * 120.00098 * 2 1 3 27 27 H 0.97003 * 119.99937 * 180.02562 * 8 7 5 28 28 H 1.09002 * 109.46183 * 294.16901 * 14 13 3 29 29 H 1.08994 * 109.46487 * 54.15301 * 14 13 3 30 30 H 1.09003 * 109.50094 * 179.11589 * 15 14 13 31 31 H 1.09001 * 109.50002 * 299.22741 * 15 14 13 32 32 H 1.08996 * 109.52894 * 182.43654 * 16 15 14 33 33 H 1.09007 * 109.57697 * 62.27694 * 16 15 14 34 34 H 1.09003 * 109.50304 * 297.71206 * 17 16 15 35 35 H 1.09000 * 109.53409 * 177.61108 * 17 16 15 36 36 H 1.09008 * 109.46811 * 56.59445 * 20 18 13 37 37 H 1.08996 * 109.47522 * 176.59724 * 20 18 13 38 38 H 0.96698 * 114.00036 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 0.8418 5 6 3.5419 1.4442 0.1239 6 1 4.1472 1.8887 -0.6523 7 6 4.1433 0.8783 1.2281 8 7 3.4061 0.3367 2.1730 9 14 6.0050 0.8799 1.3812 10 1 6.5988 1.5449 0.1937 11 1 6.4000 1.6156 2.6093 12 1 6.4961 -0.5192 1.4628 13 7 1.6514 2.0992 -1.2553 14 6 2.2781 1.4416 -2.4091 15 6 1.7393 2.0567 -3.7028 16 6 2.0479 3.5561 -3.7168 17 6 1.4251 4.2088 -2.4795 18 6 1.9730 3.5317 -1.2212 19 1 3.0547 3.6602 -1.1814 20 6 1.3381 4.1673 0.0172 21 8 -0.0846 4.0685 -0.0729 22 1 -0.3634 0.5139 0.8899 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3634 -1.0277 -0.0005 25 1 1.8933 -0.5139 -0.8899 26 1 1.8933 -0.5139 0.8900 27 1 3.8292 -0.0611 2.9500 28 1 3.3583 1.5800 -2.3636 29 1 2.0472 0.3766 -2.3897 30 1 2.2162 1.5792 -4.5588 31 1 0.6610 1.9065 -3.7556 32 1 1.6280 4.0062 -4.6163 33 1 3.1274 3.7070 -3.7038 34 1 0.3418 4.0926 -2.5131 35 1 1.6770 5.2692 -2.4611 36 1 1.6827 3.6459 0.9104 37 1 1.6265 5.2169 0.0753 38 1 -0.5540 4.4525 0.6803 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000251317688.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:47:25 Heat of formation + Delta-G solvation = -58.103514 kcal Electronic energy + Delta-G solvation = -17495.766783 eV Core-core repulsion = 14951.678019 eV Total energy + Delta-G solvation = -2544.088764 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -38.81359 -35.71048 -34.58915 -31.85934 -31.02889 -30.10916 -26.56212 -25.46117 -23.58055 -22.43838 -20.64646 -19.42581 -18.68992 -16.68580 -16.09839 -15.47163 -14.66134 -14.34157 -13.79308 -13.37412 -13.14885 -12.99218 -12.62276 -12.42391 -12.22341 -11.64225 -11.33977 -11.14034 -10.95944 -10.86824 -10.61717 -10.41960 -10.31610 -10.12877 -9.93165 -9.57234 -9.53389 -9.24093 -9.14456 -8.83891 -8.28302 -6.95891 -5.95920 -4.10621 3.24583 3.33711 3.36826 4.39713 4.94017 5.08001 5.26549 5.41115 5.46593 5.52672 5.91717 5.97912 6.00495 6.16740 6.24256 6.38115 6.40984 6.47639 6.51061 6.58176 6.59868 6.67018 6.77720 6.85439 6.91958 7.07019 7.22090 7.30357 7.45327 7.68515 7.81882 8.08538 8.22726 8.25665 8.43857 8.58208 9.02611 9.57133 11.01326 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.023441 B = 0.010735 C = 0.010037 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1194.183237 B = 2607.719196 C = 2789.089124 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.111 4.111 3 C 0.210 3.790 4 H 0.045 0.955 5 C -0.542 4.542 6 H 0.055 0.945 7 C 0.068 3.932 8 N -0.885 5.885 9 Si 0.883 3.117 10 H -0.275 1.275 11 H -0.285 1.285 12 H -0.284 1.284 13 N -0.517 5.517 14 C 0.060 3.940 15 C -0.117 4.117 16 C -0.117 4.117 17 C -0.107 4.107 18 C 0.097 3.903 19 H 0.049 0.951 20 C 0.082 3.918 21 O -0.557 6.557 22 H 0.038 0.962 23 H 0.049 0.951 24 H 0.021 0.979 25 H 0.031 0.969 26 H 0.090 0.910 27 H 0.260 0.740 28 H 0.033 0.967 29 H 0.069 0.931 30 H 0.051 0.949 31 H 0.062 0.938 32 H 0.051 0.949 33 H 0.052 0.948 34 H 0.073 0.927 35 H 0.049 0.951 36 H 0.063 0.937 37 H 0.029 0.971 38 H 0.362 0.638 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.590 5.363 -5.862 8.718 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.150 4.150 3 C 0.104 3.896 4 H 0.063 0.937 5 C -0.581 4.581 6 H 0.073 0.927 7 C -0.134 4.134 8 N -0.523 5.523 9 Si 0.712 3.288 10 H -0.200 1.200 11 H -0.211 1.211 12 H -0.210 1.210 13 N -0.242 5.242 14 C -0.068 4.068 15 C -0.155 4.155 16 C -0.155 4.155 17 C -0.144 4.144 18 C -0.012 4.012 19 H 0.067 0.933 20 C 0.004 3.996 21 O -0.360 6.360 22 H 0.057 0.943 23 H 0.068 0.932 24 H 0.040 0.960 25 H 0.050 0.950 26 H 0.108 0.892 27 H 0.070 0.930 28 H 0.051 0.949 29 H 0.087 0.913 30 H 0.070 0.930 31 H 0.081 0.919 32 H 0.069 0.931 33 H 0.071 0.929 34 H 0.091 0.909 35 H 0.067 0.933 36 H 0.081 0.919 37 H 0.047 0.953 38 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges -3.926 4.924 -6.306 8.912 hybrid contribution 2.008 0.295 0.852 2.201 sum -1.917 5.219 -5.454 7.788 Atomic orbital electron populations 1.21671 0.98718 0.98029 1.00812 1.21603 0.92396 0.99263 1.01688 1.19364 0.92577 0.91189 0.86486 0.93700 1.21845 0.93171 1.37860 1.05271 0.92695 1.24904 0.97592 0.95123 0.95778 1.69892 1.34563 1.38461 1.09433 0.86677 0.86528 0.77733 0.77892 1.19997 1.21096 1.21023 1.62346 1.57547 1.00170 1.04126 1.21915 0.96664 0.98478 0.89749 1.21622 1.01216 0.95071 0.97558 1.21543 0.99995 0.96377 0.97598 1.21532 1.01545 0.97345 0.94024 1.21393 0.96608 0.90439 0.92782 0.93307 1.22324 0.80886 0.97079 0.99342 1.86588 1.18428 1.83908 1.47041 0.94326 0.93166 0.95956 0.95040 0.89190 0.93023 0.94880 0.91255 0.93010 0.91925 0.93065 0.92919 0.90850 0.93267 0.91916 0.95269 0.79367 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.87 9.80 37.16 0.36 -2.51 16 2 C -0.11 -2.68 5.11 -26.74 -0.14 -2.81 16 3 C 0.21 5.12 1.39 -68.86 -0.10 5.02 16 4 H 0.05 1.20 5.72 -51.93 -0.30 0.91 16 5 C -0.54 -14.30 7.20 -34.44 -0.25 -14.55 16 6 H 0.05 1.48 5.84 -52.49 -0.31 1.17 16 7 C 0.07 1.84 5.29 -17.82 -0.09 1.74 16 8 N -0.88 -24.62 11.29 55.43 0.63 -23.99 16 9 Si 0.88 20.98 29.54 -169.99 -5.02 15.96 16 10 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 11 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 12 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 13 N -0.52 -11.05 3.84 -220.14 -0.85 -11.90 16 14 C 0.06 1.22 4.80 -3.83 -0.02 1.20 16 15 C -0.12 -1.94 6.09 -26.66 -0.16 -2.10 16 16 C -0.12 -1.84 6.00 -26.62 -0.16 -2.00 16 17 C -0.11 -1.80 5.21 -26.65 -0.14 -1.94 16 18 C 0.10 1.91 1.92 -67.72 -0.13 1.78 16 19 H 0.05 1.05 7.11 -51.93 -0.37 0.68 16 20 C 0.08 1.51 6.25 37.15 0.23 1.74 16 21 O -0.56 -9.78 12.76 -35.23 -0.45 -10.23 16 22 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 23 H 0.05 1.06 7.75 -51.93 -0.40 0.65 16 24 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 25 H 0.03 0.75 6.12 -51.93 -0.32 0.43 16 26 H 0.09 2.41 5.95 -51.92 -0.31 2.10 16 27 H 0.26 6.93 8.31 -40.82 -0.34 6.59 16 28 H 0.03 0.72 6.51 -51.93 -0.34 0.38 16 29 H 0.07 1.44 6.01 -51.93 -0.31 1.13 16 30 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 31 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 32 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 33 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 34 H 0.07 1.31 7.57 -51.93 -0.39 0.92 16 35 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 36 H 0.06 1.32 5.97 -51.92 -0.31 1.01 16 37 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 38 H 0.36 4.67 9.12 45.56 0.42 5.09 16 LS Contribution 284.94 15.07 4.29 4.29 Total: -1.00 -28.20 284.94 -7.44 -35.64 By element: Atomic # 1 Polarization: 10.10 SS G_CDS: -5.46 Total: 4.65 kcal Atomic # 6 Polarization: -13.83 SS G_CDS: -0.59 Total: -14.42 kcal Atomic # 7 Polarization: -35.67 SS G_CDS: -0.22 Total: -35.89 kcal Atomic # 8 Polarization: -9.78 SS G_CDS: -0.45 Total: -10.23 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.02 Total: 15.96 kcal Total LS contribution 4.29 Total: 4.29 kcal Total: -28.20 -7.44 -35.64 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000251317688.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.459 kcal (2) G-P(sol) polarization free energy of solvation -28.204 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.663 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.440 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.644 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.104 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds