Wall clock time and date at job start Sun Mar 29 2020 21:47:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52994 * 109.47275 * 2 1 4 4 H 1.09000 * 109.47546 * 55.00093 * 3 2 1 5 5 C 1.50701 * 109.47017 * 174.99840 * 3 2 1 6 6 H 1.08000 * 119.99946 * 119.99909 * 5 3 2 7 7 C 1.37877 * 120.00282 * 299.99470 * 5 3 2 8 8 N 1.31514 * 119.99706 * 0.02562 * 7 5 3 9 9 Si 1.86800 * 120.00159 * 179.97438 * 7 5 3 10 10 H 1.48499 * 109.47167 * 0.02562 * 9 7 5 11 11 H 1.48505 * 109.46847 * 120.00439 * 9 7 5 12 12 H 1.48498 * 109.47202 * 240.00429 * 9 7 5 13 13 N 1.46904 * 109.47231 * 294.99734 * 3 2 1 14 14 C 1.46851 * 110.99700 * 296.98557 * 13 3 2 15 15 C 1.53040 * 109.51186 * 174.16689 * 14 13 3 16 16 C 1.53094 * 109.29323 * 59.17937 * 15 14 13 17 17 C 1.53120 * 109.15773 * 302.34101 * 16 15 14 18 18 C 1.46849 * 110.99892 * 172.77497 * 13 3 2 19 19 H 1.08999 * 109.46434 * 65.83602 * 18 13 3 20 20 C 1.52994 * 109.46375 * 305.85241 * 18 13 3 21 21 O 1.42900 * 109.47320 * 296.60088 * 20 18 13 22 22 H 1.08997 * 109.47394 * 300.00490 * 1 2 3 23 23 H 1.09002 * 109.47059 * 60.00368 * 1 2 3 24 24 H 1.09002 * 109.47379 * 179.97438 * 1 2 3 25 25 H 1.08997 * 109.47394 * 239.99510 * 2 1 3 26 26 H 1.09008 * 109.47058 * 120.00098 * 2 1 3 27 27 H 0.97003 * 119.99937 * 180.02562 * 8 7 5 28 28 H 1.09002 * 109.46183 * 294.16901 * 14 13 3 29 29 H 1.08994 * 109.46487 * 54.15301 * 14 13 3 30 30 H 1.09003 * 109.50094 * 179.11589 * 15 14 13 31 31 H 1.09001 * 109.50002 * 299.22741 * 15 14 13 32 32 H 1.08996 * 109.52894 * 182.43654 * 16 15 14 33 33 H 1.09007 * 109.57697 * 62.27694 * 16 15 14 34 34 H 1.09003 * 109.50304 * 297.71206 * 17 16 15 35 35 H 1.09000 * 109.53409 * 177.61108 * 17 16 15 36 36 H 1.09008 * 109.46811 * 56.59445 * 20 18 13 37 37 H 1.08996 * 109.47522 * 176.59724 * 20 18 13 38 38 H 0.96698 * 114.00036 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 0.8418 5 6 3.5419 1.4442 0.1239 6 1 4.1472 1.8887 -0.6523 7 6 4.1433 0.8783 1.2281 8 7 3.4061 0.3367 2.1730 9 14 6.0050 0.8799 1.3812 10 1 6.5988 1.5449 0.1937 11 1 6.4000 1.6156 2.6093 12 1 6.4961 -0.5192 1.4628 13 7 1.6514 2.0992 -1.2553 14 6 2.2781 1.4416 -2.4091 15 6 1.7393 2.0567 -3.7028 16 6 2.0479 3.5561 -3.7168 17 6 1.4251 4.2088 -2.4795 18 6 1.9730 3.5317 -1.2212 19 1 3.0547 3.6602 -1.1814 20 6 1.3381 4.1673 0.0172 21 8 -0.0846 4.0685 -0.0729 22 1 -0.3634 0.5139 0.8899 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3634 -1.0277 -0.0005 25 1 1.8933 -0.5139 -0.8899 26 1 1.8933 -0.5139 0.8900 27 1 3.8292 -0.0611 2.9500 28 1 3.3583 1.5800 -2.3636 29 1 2.0472 0.3766 -2.3897 30 1 2.2162 1.5792 -4.5588 31 1 0.6610 1.9065 -3.7556 32 1 1.6280 4.0062 -4.6163 33 1 3.1274 3.7070 -3.7038 34 1 0.3418 4.0926 -2.5131 35 1 1.6770 5.2692 -2.4611 36 1 1.6827 3.6459 0.9104 37 1 1.6265 5.2169 0.0753 38 1 -0.5540 4.4525 0.6803 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000251317688.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:47:25 Heat of formation + Delta-G solvation = -77.450880 kcal Electronic energy + Delta-G solvation = -17496.605748 eV Core-core repulsion = 14951.678019 eV Total energy + Delta-G solvation = -2544.927729 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.40874 -37.17882 -36.29023 -33.81204 -32.58304 -31.72636 -28.45395 -26.98353 -25.34329 -24.14394 -22.13453 -21.09191 -20.41403 -18.25551 -17.92655 -17.19991 -16.43504 -15.98829 -15.22206 -14.98740 -14.85214 -14.59651 -14.35434 -13.87091 -13.77458 -13.32363 -13.10077 -13.01560 -12.75035 -12.53762 -12.29227 -12.08495 -11.92954 -11.71746 -11.51979 -11.46553 -11.10809 -10.88080 -10.86217 -10.55265 -10.25644 -8.78125 -7.98608 -6.23132 1.33850 1.37676 1.46503 2.39836 3.16427 3.40617 3.66484 4.04956 4.09051 4.17711 4.44660 4.55482 4.58326 4.61434 4.71863 4.76084 4.88432 4.93205 4.95324 5.08918 5.11995 5.14653 5.23331 5.31680 5.41091 5.42496 5.47004 5.56010 5.62227 5.70588 5.85766 6.12748 6.28075 6.48320 6.80472 7.02417 7.08396 7.47948 8.93447 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.023441 B = 0.010735 C = 0.010037 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1194.183237 B = 2607.719196 C = 2789.089124 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.108 4.108 3 C 0.218 3.782 4 H 0.019 0.981 5 C -0.547 4.547 6 H 0.045 0.955 7 C 0.023 3.977 8 N -0.910 5.910 9 Si 0.941 3.059 10 H -0.274 1.274 11 H -0.281 1.281 12 H -0.282 1.282 13 N -0.516 5.516 14 C 0.060 3.940 15 C -0.109 4.109 16 C -0.115 4.115 17 C -0.098 4.098 18 C 0.089 3.911 19 H 0.026 0.974 20 C 0.089 3.911 21 O -0.566 6.566 22 H 0.031 0.969 23 H 0.053 0.947 24 H 0.042 0.958 25 H 0.028 0.972 26 H 0.061 0.939 27 H 0.260 0.740 28 H 0.010 0.990 29 H 0.057 0.943 30 H 0.073 0.927 31 H 0.064 0.936 32 H 0.081 0.919 33 H 0.050 0.950 34 H 0.067 0.933 35 H 0.070 0.930 36 H 0.028 0.972 37 H 0.057 0.943 38 H 0.383 0.617 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.884 6.305 -7.315 10.409 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.146 4.146 3 C 0.111 3.889 4 H 0.036 0.964 5 C -0.587 4.587 6 H 0.063 0.937 7 C -0.177 4.177 8 N -0.549 5.549 9 Si 0.768 3.232 10 H -0.199 1.199 11 H -0.207 1.207 12 H -0.208 1.208 13 N -0.240 5.240 14 C -0.068 4.068 15 C -0.147 4.147 16 C -0.153 4.153 17 C -0.135 4.135 18 C -0.020 4.020 19 H 0.044 0.956 20 C 0.011 3.989 21 O -0.372 6.372 22 H 0.050 0.950 23 H 0.072 0.928 24 H 0.061 0.939 25 H 0.047 0.953 26 H 0.079 0.921 27 H 0.070 0.930 28 H 0.029 0.971 29 H 0.075 0.925 30 H 0.092 0.908 31 H 0.083 0.917 32 H 0.100 0.900 33 H 0.069 0.931 34 H 0.086 0.914 35 H 0.089 0.911 36 H 0.046 0.954 37 H 0.075 0.925 38 H 0.230 0.770 Dipole moment (debyes) X Y Z Total from point charges -4.232 5.880 -7.761 10.616 hybrid contribution 2.070 0.018 1.317 2.454 sum -2.161 5.898 -6.444 8.999 Atomic orbital electron populations 1.21504 0.96410 0.99302 1.00551 1.21477 0.94407 0.98743 1.00018 1.19112 0.91273 0.91241 0.87288 0.96372 1.22032 0.94386 1.37341 1.04892 0.93692 1.25558 1.01363 0.95074 0.95666 1.70009 1.35971 1.39145 1.09813 0.85770 0.82005 0.77634 0.77785 1.19853 1.20664 1.20802 1.62330 1.57320 1.01181 1.03153 1.21948 0.95420 0.98204 0.91247 1.21573 1.01267 0.95920 0.95949 1.21552 1.00016 0.95467 0.98227 1.21467 1.00911 0.98329 0.92842 1.21532 0.95664 0.89640 0.95165 0.95579 1.22138 0.81468 0.98037 0.97277 1.86520 1.17818 1.84445 1.48438 0.95012 0.92800 0.93918 0.95331 0.92087 0.93040 0.97136 0.92457 0.90794 0.91698 0.90000 0.93108 0.91444 0.91141 0.95391 0.92470 0.76976 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.07 9.80 71.98 0.71 -4.36 16 2 C -0.11 -5.29 5.11 30.59 0.16 -5.14 16 3 C 0.22 10.89 1.39 44.17 0.06 10.95 16 4 H 0.02 1.02 5.72 -2.39 -0.01 1.01 16 5 C -0.55 -29.58 7.20 25.60 0.18 -29.39 16 6 H 0.04 2.48 5.84 -2.91 -0.02 2.46 16 7 C 0.02 1.26 5.29 84.65 0.45 1.71 16 8 N -0.91 -51.81 11.29 21.45 0.24 -51.57 16 9 Si 0.94 43.65 29.54 68.60 2.03 45.68 16 10 H -0.27 -12.52 7.11 99.48 0.71 -11.81 16 11 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 12 H -0.28 -12.92 7.11 99.48 0.71 -12.22 16 13 N -0.52 -22.04 3.84 -850.38 -3.26 -25.31 16 14 C 0.06 2.41 4.80 86.33 0.41 2.82 16 15 C -0.11 -3.38 6.09 30.64 0.19 -3.19 16 16 C -0.12 -3.24 6.00 30.67 0.18 -3.06 16 17 C -0.10 -3.05 5.21 30.65 0.16 -2.89 16 18 C 0.09 3.45 1.92 44.94 0.09 3.54 16 19 H 0.03 1.13 7.11 -2.39 -0.02 1.12 16 20 C 0.09 3.24 6.25 71.98 0.45 3.69 16 21 O -0.57 -19.17 12.76 -148.98 -1.90 -21.07 16 22 H 0.03 1.35 8.14 -2.39 -0.02 1.33 16 23 H 0.05 2.21 7.75 -2.39 -0.02 2.19 16 24 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 25 H 0.03 1.37 6.12 -2.39 -0.01 1.36 16 26 H 0.06 3.36 5.95 -2.38 -0.01 3.34 16 27 H 0.26 14.14 8.31 -92.71 -0.77 13.37 16 28 H 0.01 0.46 6.51 -2.39 -0.02 0.45 16 29 H 0.06 2.39 6.01 -2.39 -0.01 2.37 16 30 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 31 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 32 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 33 H 0.05 1.46 8.14 -2.38 -0.02 1.44 16 34 H 0.07 2.22 7.57 -2.39 -0.02 2.20 16 35 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 36 H 0.03 1.21 5.97 -2.38 -0.01 1.20 16 37 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 38 H 0.38 9.30 9.12 -74.06 -0.68 8.63 16 Total: -1.00 -60.76 284.94 0.50 -60.26 By element: Atomic # 1 Polarization: 16.97 SS G_CDS: 0.36 Total: 17.33 kcal Atomic # 6 Polarization: -28.36 SS G_CDS: 3.04 Total: -25.32 kcal Atomic # 7 Polarization: -73.85 SS G_CDS: -3.02 Total: -76.88 kcal Atomic # 8 Polarization: -19.17 SS G_CDS: -1.90 Total: -21.07 kcal Atomic # 14 Polarization: 43.65 SS G_CDS: 2.03 Total: 45.68 kcal Total: -60.76 0.50 -60.26 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000251317688.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.191 kcal (2) G-P(sol) polarization free energy of solvation -60.762 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.953 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.502 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.260 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.451 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds