Wall clock time and date at job start Sun Mar 29 2020 21:47:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.47292 * 2 1 4 4 H 1.08994 * 109.47334 * 56.89940 * 3 2 1 5 5 C 1.50696 * 109.46896 * 176.89980 * 3 2 1 6 6 H 1.08012 * 119.99761 * 119.99999 * 5 3 2 7 7 C 1.37871 * 120.00620 * 299.99604 * 5 3 2 8 8 N 1.31517 * 119.99572 * 0.02562 * 7 5 3 9 9 Si 1.86801 * 120.00641 * 180.02562 * 7 5 3 10 10 H 1.48498 * 109.47121 * 90.00117 * 9 7 5 11 11 H 1.48502 * 109.47037 * 210.00301 * 9 7 5 12 12 H 1.48501 * 109.46917 * 330.00074 * 9 7 5 13 13 N 1.46898 * 109.46742 * 296.89855 * 3 2 1 14 14 C 1.46853 * 111.00159 * 170.99408 * 13 3 2 15 15 C 1.53031 * 109.52615 * 185.83650 * 14 13 3 16 16 C 1.53113 * 109.31437 * 300.80183 * 15 14 13 17 17 C 1.53209 * 109.11520 * 57.63495 * 16 15 14 18 18 C 1.53002 * 109.49255 * 182.41985 * 17 16 15 19 19 O 1.42901 * 109.48944 * 62.31875 * 17 16 15 20 20 C 1.46851 * 111.00236 * 295.20193 * 13 3 2 21 21 H 1.08996 * 109.47365 * 65.06399 * 1 2 3 22 22 H 1.08997 * 109.47509 * 185.06878 * 1 2 3 23 23 H 1.09004 * 109.46991 * 305.06399 * 1 2 3 24 24 H 1.08994 * 109.46829 * 239.99143 * 2 1 3 25 25 H 1.09004 * 109.47004 * 120.00185 * 2 1 3 26 26 H 0.97005 * 120.00591 * 179.97438 * 8 7 5 27 27 H 1.09000 * 109.45566 * 65.82214 * 14 13 3 28 28 H 1.09003 * 109.46079 * 305.86347 * 14 13 3 29 29 H 1.09002 * 109.49824 * 60.76738 * 15 14 13 30 30 H 1.08997 * 109.50324 * 180.83730 * 15 14 13 31 31 H 1.09001 * 109.52385 * 177.57585 * 16 15 14 32 32 H 1.08994 * 109.52477 * 297.76940 * 16 15 14 33 33 H 1.08998 * 109.47047 * 179.82044 * 18 17 16 34 34 H 1.08994 * 109.47339 * 299.82546 * 18 17 16 35 35 H 1.09008 * 109.46869 * 59.82338 * 18 17 16 36 36 H 0.96701 * 114.00030 * 60.18011 * 19 17 16 37 37 H 1.08992 * 109.46444 * 294.18104 * 20 13 3 38 38 H 1.08998 * 109.46003 * 54.15968 * 20 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6321 1.9721 0.8608 5 6 3.5450 1.4431 0.0768 6 1 4.1259 1.8963 -0.7130 7 6 4.1806 0.8652 1.1553 8 7 3.4733 0.3129 2.1167 9 14 6.0461 0.8665 1.2509 10 1 6.5049 2.0917 1.9535 11 1 6.5044 -0.3330 1.9968 12 1 6.6121 0.8419 -0.1219 13 7 1.6125 2.1129 -1.2352 14 6 1.8969 3.5525 -1.1781 15 6 1.3097 4.2392 -2.4132 16 6 1.9275 3.6284 -3.6740 17 6 1.6586 2.1201 -3.6843 18 6 2.3240 1.4912 -4.9101 19 8 0.2495 1.8873 -3.7334 20 6 2.2358 1.4948 -2.4124 21 1 -0.3634 0.4332 -0.9318 22 1 -0.3634 -1.0236 0.0908 23 1 -0.3633 0.5904 0.8412 24 1 1.8933 -0.5139 -0.8899 25 1 1.8933 -0.5139 0.8900 26 1 3.9203 -0.0940 2.8754 27 1 2.9754 3.7088 -1.1540 28 1 1.4486 3.9760 -0.2794 29 1 0.2294 4.0950 -2.4306 30 1 1.5339 5.3053 -2.3780 31 1 1.4801 4.0851 -4.5569 32 1 3.0027 3.8065 -3.6759 33 1 2.1352 0.4177 -4.9154 34 1 1.9126 1.9369 -5.8157 35 1 3.3985 1.6709 -4.8725 36 1 -0.1832 2.2571 -4.5151 37 1 3.3126 1.6608 -2.3825 38 1 2.0332 0.4238 -2.4103 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000253072537.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:47:14 Heat of formation + Delta-G solvation = -61.030148 kcal Electronic energy + Delta-G solvation = -17372.928360 eV Core-core repulsion = 14828.712687 eV Total energy + Delta-G solvation = -2544.215673 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.11376 -36.13490 -33.68654 -31.79745 -31.03290 -30.26044 -26.62006 -26.14349 -23.87518 -22.42586 -21.01724 -19.48712 -18.88663 -16.35262 -15.93980 -15.43649 -14.52786 -14.17777 -14.04312 -13.58866 -13.15091 -12.93126 -12.69430 -12.20040 -11.93437 -11.64802 -11.53219 -11.38061 -11.20593 -11.06504 -10.77096 -10.60280 -10.41825 -10.33511 -10.09589 -9.68473 -9.55704 -9.42190 -9.10143 -8.96841 -8.32230 -6.96859 -5.94276 -4.08822 3.27126 3.34602 3.36729 4.41124 4.65372 5.01752 5.11252 5.25352 5.28368 5.49408 5.56095 5.80125 5.85573 6.03544 6.12005 6.23433 6.29038 6.35407 6.45722 6.48800 6.58142 6.61038 6.74830 6.79946 6.85215 6.93473 7.25091 7.30988 7.46498 7.68463 7.82906 8.05609 8.14922 8.23917 8.42299 8.57366 9.02683 9.58578 11.03769 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.027176 B = 0.009783 C = 0.008733 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1030.076757 B = 2861.278797 C = 3205.640150 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.108 4.108 3 C 0.213 3.787 4 H 0.037 0.963 5 C -0.543 4.543 6 H 0.055 0.945 7 C 0.068 3.932 8 N -0.884 5.884 9 Si 0.885 3.115 10 H -0.282 1.282 11 H -0.286 1.286 12 H -0.276 1.276 13 N -0.522 5.522 14 C 0.063 3.937 15 C -0.112 4.112 16 C -0.141 4.141 17 C 0.129 3.871 18 C -0.176 4.176 19 O -0.538 6.538 20 C 0.080 3.920 21 H 0.052 0.948 22 H 0.022 0.978 23 H 0.037 0.963 24 H 0.031 0.969 25 H 0.089 0.911 26 H 0.261 0.739 27 H 0.031 0.969 28 H 0.062 0.938 29 H 0.069 0.931 30 H 0.052 0.948 31 H 0.054 0.946 32 H 0.063 0.937 33 H 0.062 0.938 34 H 0.051 0.949 35 H 0.062 0.938 36 H 0.356 0.644 37 H 0.047 0.953 38 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.164 4.122 -10.543 11.754 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.147 4.147 3 C 0.107 3.893 4 H 0.055 0.945 5 C -0.583 4.583 6 H 0.073 0.927 7 C -0.134 4.134 8 N -0.523 5.523 9 Si 0.713 3.287 10 H -0.208 1.208 11 H -0.212 1.212 12 H -0.201 1.201 13 N -0.245 5.245 14 C -0.066 4.066 15 C -0.150 4.150 16 C -0.179 4.179 17 C 0.088 3.912 18 C -0.234 4.234 19 O -0.341 6.341 20 C -0.049 4.049 21 H 0.071 0.929 22 H 0.041 0.959 23 H 0.056 0.944 24 H 0.050 0.950 25 H 0.108 0.892 26 H 0.071 0.929 27 H 0.049 0.951 28 H 0.080 0.920 29 H 0.087 0.913 30 H 0.070 0.930 31 H 0.072 0.928 32 H 0.081 0.919 33 H 0.081 0.919 34 H 0.070 0.930 35 H 0.081 0.919 36 H 0.201 0.799 37 H 0.065 0.935 38 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -3.523 3.655 -9.810 11.046 hybrid contribution 2.014 0.391 -0.359 2.083 sum -1.509 4.046 -10.169 11.048 Atomic orbital electron populations 1.21691 0.98718 0.98132 1.00894 1.21564 0.92391 0.99054 1.01655 1.19291 0.92518 0.91184 0.86319 0.94474 1.21759 0.92899 1.37497 1.06095 0.92725 1.24907 0.97775 0.95087 0.95617 1.69883 1.34854 1.37797 1.09744 0.86708 0.86416 0.77518 0.78016 1.20780 1.21182 1.20108 1.62311 1.57580 1.01141 1.03490 1.21844 0.98052 0.90281 0.96413 1.21523 1.01171 0.97659 0.94600 1.22240 1.01032 0.96405 0.98250 1.21423 0.81377 0.93109 0.95288 1.22459 1.01384 1.01826 0.97736 1.86772 1.20020 1.80397 1.46907 1.21848 0.95812 0.99122 0.88077 0.92864 0.95890 0.94427 0.95038 0.89229 0.92935 0.95123 0.91962 0.91251 0.92953 0.92769 0.91856 0.91880 0.92951 0.91939 0.79914 0.93496 0.90722 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.97 9.72 37.16 0.36 -2.61 16 2 C -0.11 -2.66 5.09 -26.73 -0.14 -2.79 16 3 C 0.21 5.36 1.73 -68.87 -0.12 5.24 16 4 H 0.04 1.04 8.01 -51.93 -0.42 0.63 16 5 C -0.54 -14.60 7.22 -34.44 -0.25 -14.85 16 6 H 0.05 1.47 5.84 -52.48 -0.31 1.16 16 7 C 0.07 1.88 5.30 -17.82 -0.09 1.78 16 8 N -0.88 -25.06 11.30 55.43 0.63 -24.44 16 9 Si 0.89 21.18 29.54 -169.99 -5.02 16.16 16 10 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 11 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 12 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 13 N -0.52 -11.34 3.96 -228.09 -0.90 -12.24 16 14 C 0.06 1.25 5.18 -3.83 -0.02 1.23 16 15 C -0.11 -1.78 5.93 -26.66 -0.16 -1.94 16 16 C -0.14 -2.06 5.00 -26.56 -0.13 -2.19 16 17 C 0.13 2.06 1.00 -90.49 -0.09 1.97 16 18 C -0.18 -2.33 8.82 37.16 0.33 -2.01 16 19 O -0.54 -8.66 12.31 -35.23 -0.43 -9.09 16 20 C 0.08 1.61 3.76 -3.83 -0.01 1.60 16 21 H 0.05 1.15 7.84 -51.93 -0.41 0.75 16 22 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 23 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 24 H 0.03 0.76 6.26 -51.93 -0.33 0.44 16 25 H 0.09 2.43 5.99 -51.93 -0.31 2.12 16 26 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 27 H 0.03 0.65 7.22 -51.93 -0.38 0.27 16 28 H 0.06 1.26 8.03 -51.93 -0.42 0.84 16 29 H 0.07 1.14 7.80 -51.93 -0.40 0.73 16 30 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 33 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 34 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.06 0.81 8.14 -51.92 -0.42 0.39 16 36 H 0.36 4.10 9.05 45.56 0.41 4.52 16 37 H 0.05 1.01 6.42 -51.93 -0.33 0.68 16 38 H 0.07 1.61 6.11 -51.93 -0.32 1.30 16 LS Contribution 289.21 15.07 4.36 4.36 Total: -1.00 -28.69 289.21 -7.42 -36.11 By element: Atomic # 1 Polarization: 9.44 SS G_CDS: -5.72 Total: 3.72 kcal Atomic # 6 Polarization: -14.25 SS G_CDS: -0.33 Total: -14.57 kcal Atomic # 7 Polarization: -36.40 SS G_CDS: -0.28 Total: -36.68 kcal Atomic # 8 Polarization: -8.66 SS G_CDS: -0.43 Total: -9.09 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.16 kcal Total LS contribution 4.36 Total: 4.36 kcal Total: -28.69 -7.42 -36.11 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000253072537.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.919 kcal (2) G-P(sol) polarization free energy of solvation -28.694 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.613 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.417 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.111 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.030 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds