Wall clock time and date at job start Sun Mar 29 2020 21:47:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.47292 * 2 1 4 4 H 1.08994 * 109.47334 * 56.89940 * 3 2 1 5 5 C 1.50696 * 109.46896 * 176.89980 * 3 2 1 6 6 H 1.08012 * 119.99761 * 119.99999 * 5 3 2 7 7 C 1.37871 * 120.00620 * 299.99604 * 5 3 2 8 8 N 1.31517 * 119.99572 * 0.02562 * 7 5 3 9 9 Si 1.86801 * 120.00641 * 180.02562 * 7 5 3 10 10 H 1.48498 * 109.47121 * 90.00117 * 9 7 5 11 11 H 1.48502 * 109.47037 * 210.00301 * 9 7 5 12 12 H 1.48501 * 109.46917 * 330.00074 * 9 7 5 13 13 N 1.46898 * 109.46742 * 296.89855 * 3 2 1 14 14 C 1.46853 * 111.00159 * 170.99408 * 13 3 2 15 15 C 1.53031 * 109.52615 * 185.83650 * 14 13 3 16 16 C 1.53113 * 109.31437 * 300.80183 * 15 14 13 17 17 C 1.53209 * 109.11520 * 57.63495 * 16 15 14 18 18 C 1.53002 * 109.49255 * 182.41985 * 17 16 15 19 19 O 1.42901 * 109.48944 * 62.31875 * 17 16 15 20 20 C 1.46851 * 111.00236 * 295.20193 * 13 3 2 21 21 H 1.08996 * 109.47365 * 65.06399 * 1 2 3 22 22 H 1.08997 * 109.47509 * 185.06878 * 1 2 3 23 23 H 1.09004 * 109.46991 * 305.06399 * 1 2 3 24 24 H 1.08994 * 109.46829 * 239.99143 * 2 1 3 25 25 H 1.09004 * 109.47004 * 120.00185 * 2 1 3 26 26 H 0.97005 * 120.00591 * 179.97438 * 8 7 5 27 27 H 1.09000 * 109.45566 * 65.82214 * 14 13 3 28 28 H 1.09003 * 109.46079 * 305.86347 * 14 13 3 29 29 H 1.09002 * 109.49824 * 60.76738 * 15 14 13 30 30 H 1.08997 * 109.50324 * 180.83730 * 15 14 13 31 31 H 1.09001 * 109.52385 * 177.57585 * 16 15 14 32 32 H 1.08994 * 109.52477 * 297.76940 * 16 15 14 33 33 H 1.08998 * 109.47047 * 179.82044 * 18 17 16 34 34 H 1.08994 * 109.47339 * 299.82546 * 18 17 16 35 35 H 1.09008 * 109.46869 * 59.82338 * 18 17 16 36 36 H 0.96701 * 114.00030 * 60.18011 * 19 17 16 37 37 H 1.08992 * 109.46444 * 294.18104 * 20 13 3 38 38 H 1.08998 * 109.46003 * 54.15968 * 20 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6321 1.9721 0.8608 5 6 3.5450 1.4431 0.0768 6 1 4.1259 1.8963 -0.7130 7 6 4.1806 0.8652 1.1553 8 7 3.4733 0.3129 2.1167 9 14 6.0461 0.8665 1.2509 10 1 6.5049 2.0917 1.9535 11 1 6.5044 -0.3330 1.9968 12 1 6.6121 0.8419 -0.1219 13 7 1.6125 2.1129 -1.2352 14 6 1.8969 3.5525 -1.1781 15 6 1.3097 4.2392 -2.4132 16 6 1.9275 3.6284 -3.6740 17 6 1.6586 2.1201 -3.6843 18 6 2.3240 1.4912 -4.9101 19 8 0.2495 1.8873 -3.7334 20 6 2.2358 1.4948 -2.4124 21 1 -0.3634 0.4332 -0.9318 22 1 -0.3634 -1.0236 0.0908 23 1 -0.3633 0.5904 0.8412 24 1 1.8933 -0.5139 -0.8899 25 1 1.8933 -0.5139 0.8900 26 1 3.9203 -0.0940 2.8754 27 1 2.9754 3.7088 -1.1540 28 1 1.4486 3.9760 -0.2794 29 1 0.2294 4.0950 -2.4306 30 1 1.5339 5.3053 -2.3780 31 1 1.4801 4.0851 -4.5569 32 1 3.0027 3.8065 -3.6759 33 1 2.1352 0.4177 -4.9154 34 1 1.9126 1.9369 -5.8157 35 1 3.3985 1.6709 -4.8725 36 1 -0.1832 2.2571 -4.5151 37 1 3.3126 1.6608 -2.3825 38 1 2.0332 0.4238 -2.4103 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000253072537.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:47:14 Heat of formation + Delta-G solvation = -81.045086 kcal Electronic energy + Delta-G solvation = -17373.796272 eV Core-core repulsion = 14828.712687 eV Total energy + Delta-G solvation = -2545.083585 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.57184 -37.74622 -35.31742 -33.73312 -32.36957 -31.88219 -28.54061 -27.49432 -25.66262 -24.13955 -22.44123 -21.13063 -20.61324 -18.34801 -17.33640 -16.99604 -16.32568 -15.75123 -15.34132 -15.18485 -14.88370 -14.55680 -14.30955 -13.63961 -13.43018 -13.29695 -13.12092 -12.88846 -12.81455 -12.63187 -12.50642 -12.46295 -12.01356 -11.85245 -11.69687 -11.54823 -11.39897 -11.07794 -10.76397 -10.53393 -10.39416 -8.82514 -8.01252 -6.26435 1.35510 1.37020 1.45983 2.38885 3.14275 3.37292 3.55078 3.92772 3.99034 4.18647 4.32708 4.50991 4.55442 4.72081 4.73867 4.75640 4.88878 4.93427 4.94649 4.99474 5.04085 5.06643 5.17199 5.25616 5.31062 5.41091 5.43125 5.50989 5.54359 5.64663 5.79583 6.07015 6.21504 6.42270 6.75194 6.96424 7.18679 7.44642 8.92023 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.027176 B = 0.009783 C = 0.008733 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1030.076757 B = 2861.278797 C = 3205.640150 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.102 4.102 3 C 0.218 3.782 4 H 0.000 1.000 5 C -0.552 4.552 6 H 0.049 0.951 7 C 0.020 3.980 8 N -0.911 5.911 9 Si 0.947 3.053 10 H -0.278 1.278 11 H -0.282 1.282 12 H -0.271 1.271 13 N -0.521 5.521 14 C 0.060 3.940 15 C -0.103 4.103 16 C -0.137 4.137 17 C 0.134 3.866 18 C -0.170 4.170 19 O -0.557 6.557 20 C 0.081 3.919 21 H 0.054 0.946 22 H 0.043 0.957 23 H 0.031 0.969 24 H 0.027 0.973 25 H 0.061 0.939 26 H 0.261 0.739 27 H 0.011 0.989 28 H 0.048 0.952 29 H 0.068 0.932 30 H 0.076 0.924 31 H 0.093 0.907 32 H 0.061 0.939 33 H 0.054 0.946 34 H 0.085 0.915 35 H 0.062 0.938 36 H 0.380 0.620 37 H 0.027 0.973 38 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.225 4.966 -12.724 14.035 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.140 4.140 3 C 0.110 3.890 4 H 0.018 0.982 5 C -0.591 4.591 6 H 0.067 0.933 7 C -0.180 4.180 8 N -0.550 5.550 9 Si 0.773 3.227 10 H -0.203 1.203 11 H -0.208 1.208 12 H -0.196 1.196 13 N -0.245 5.245 14 C -0.069 4.069 15 C -0.140 4.140 16 C -0.175 4.175 17 C 0.093 3.907 18 C -0.228 4.228 19 O -0.364 6.364 20 C -0.048 4.048 21 H 0.073 0.927 22 H 0.062 0.938 23 H 0.051 0.949 24 H 0.045 0.955 25 H 0.080 0.920 26 H 0.071 0.929 27 H 0.030 0.970 28 H 0.067 0.933 29 H 0.087 0.913 30 H 0.095 0.905 31 H 0.111 0.889 32 H 0.080 0.920 33 H 0.074 0.926 34 H 0.104 0.896 35 H 0.081 0.919 36 H 0.228 0.772 37 H 0.045 0.955 38 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -3.595 4.513 -12.021 13.334 hybrid contribution 1.989 0.138 0.332 2.021 sum -1.606 4.651 -11.689 12.682 Atomic orbital electron populations 1.21525 0.96399 0.99366 1.00678 1.21403 0.94390 0.98290 0.99956 1.19064 0.91604 0.91397 0.86888 0.98224 1.21970 0.93952 1.37212 1.05954 0.93266 1.25642 1.02051 0.94884 0.95375 1.70013 1.36446 1.38414 1.10177 0.85730 0.81285 0.77572 0.78101 1.20349 1.20754 1.19578 1.62278 1.57445 1.02060 1.02670 1.21935 0.97101 0.89463 0.98408 1.21461 1.00817 0.98654 0.93103 1.22229 1.01177 0.95201 0.98861 1.21250 0.81675 0.93975 0.93794 1.22389 1.01329 1.01401 0.97635 1.86702 1.19954 1.80972 1.48758 1.21839 0.94985 0.98267 0.89685 0.92671 0.93828 0.94941 0.95451 0.92008 0.92923 0.97027 0.93325 0.91280 0.90503 0.88900 0.91996 0.92641 0.89636 0.91899 0.77207 0.95505 0.92882 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.33 9.72 71.98 0.70 -4.63 16 2 C -0.10 -5.15 5.09 30.59 0.16 -5.00 16 3 C 0.22 11.38 1.73 44.17 0.08 11.46 16 4 H 0.00 -0.01 8.01 -2.39 -0.02 -0.03 16 5 C -0.55 -30.57 7.22 25.60 0.18 -30.38 16 6 H 0.05 2.73 5.84 -2.90 -0.02 2.71 16 7 C 0.02 1.13 5.30 84.65 0.45 1.58 16 8 N -0.91 -53.10 11.30 21.45 0.24 -52.86 16 9 Si 0.95 44.07 29.54 68.60 2.03 46.10 16 10 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 11 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 12 H -0.27 -12.29 7.11 99.48 0.71 -11.59 16 13 N -0.52 -23.04 3.96 -875.54 -3.47 -26.50 16 14 C 0.06 2.38 5.18 86.32 0.45 2.83 16 15 C -0.10 -3.04 5.93 30.64 0.18 -2.86 16 16 C -0.14 -3.52 5.00 30.70 0.15 -3.37 16 17 C 0.13 3.97 1.00 -10.71 -0.01 3.96 16 18 C -0.17 -4.00 8.82 71.98 0.64 -3.36 16 19 O -0.56 -16.40 12.31 -148.98 -1.83 -18.23 16 20 C 0.08 3.26 3.76 86.32 0.32 3.59 16 21 H 0.05 2.36 7.84 -2.39 -0.02 2.35 16 22 H 0.04 1.69 8.14 -2.39 -0.02 1.67 16 23 H 0.03 1.41 8.14 -2.39 -0.02 1.39 16 24 H 0.03 1.37 6.26 -2.39 -0.01 1.35 16 25 H 0.06 3.47 5.99 -2.38 -0.01 3.46 16 26 H 0.26 14.50 8.31 -92.70 -0.77 13.73 16 27 H 0.01 0.50 7.22 -2.39 -0.02 0.48 16 28 H 0.05 2.02 8.03 -2.39 -0.02 2.00 16 29 H 0.07 2.08 7.80 -2.39 -0.02 2.06 16 30 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 31 H 0.09 1.75 8.14 -2.39 -0.02 1.73 16 32 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 33 H 0.05 1.39 8.14 -2.39 -0.02 1.37 16 34 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 35 H 0.06 1.47 8.14 -2.38 -0.02 1.46 16 36 H 0.38 7.20 9.05 -74.06 -0.67 6.53 16 37 H 0.03 1.18 6.42 -2.39 -0.02 1.16 16 38 H 0.05 2.33 6.11 -2.39 -0.01 2.32 16 Total: -1.00 -63.32 289.21 0.62 -62.70 By element: Atomic # 1 Polarization: 14.63 SS G_CDS: 0.36 Total: 14.99 kcal Atomic # 6 Polarization: -29.48 SS G_CDS: 3.30 Total: -26.19 kcal Atomic # 7 Polarization: -76.14 SS G_CDS: -3.22 Total: -79.36 kcal Atomic # 8 Polarization: -16.40 SS G_CDS: -1.83 Total: -18.23 kcal Atomic # 14 Polarization: 44.07 SS G_CDS: 2.03 Total: 46.10 kcal Total: -63.32 0.62 -62.70 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000253072537.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.349 kcal (2) G-P(sol) polarization free energy of solvation -63.316 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.665 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.620 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.696 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.045 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds