Wall clock time and date at job start Sun Mar 29 2020 21:58:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52997 * 109.47061 * 2 1 4 4 N 1.46903 * 109.46905 * 119.99944 * 2 1 3 5 5 C 1.46844 * 111.00032 * 55.79090 * 4 2 1 6 6 C 1.53042 * 109.52144 * 185.83872 * 5 4 2 7 7 C 1.53120 * 109.27687 * 300.81984 * 6 5 4 8 8 C 1.53113 * 109.16064 * 57.65883 * 7 6 5 9 9 H 1.08999 * 109.53747 * 62.30187 * 8 7 6 10 10 O 1.42897 * 109.50349 * 182.40479 * 8 7 6 11 11 C 1.42905 * 113.99899 * 269.79799 * 10 8 7 12 12 C 1.50694 * 109.47179 * 180.02562 * 11 10 8 13 13 H 1.08000 * 120.00563 * 0.02562 * 12 11 10 14 14 C 1.37885 * 119.99902 * 180.02562 * 12 11 10 15 15 N 1.31516 * 119.99913 * 359.97438 * 14 12 11 16 16 Si 1.86798 * 119.99766 * 179.97438 * 14 12 11 17 17 H 1.48506 * 109.46985 * 179.97438 * 16 14 12 18 18 H 1.48494 * 109.47276 * 299.99832 * 16 14 12 19 19 H 1.48498 * 109.47150 * 60.00043 * 16 14 12 20 20 C 1.46846 * 110.99674 * 180.02562 * 4 2 1 21 21 H 1.08997 * 109.47205 * 299.99952 * 1 2 3 22 22 H 1.08999 * 109.47227 * 60.00501 * 1 2 3 23 23 H 1.09003 * 109.46897 * 179.97438 * 1 2 3 24 24 H 1.09001 * 109.47125 * 239.99538 * 2 1 3 25 25 H 1.09005 * 109.46814 * 59.99723 * 3 2 1 26 26 H 1.08999 * 109.47309 * 179.97438 * 3 2 1 27 27 H 1.09005 * 109.47115 * 299.99950 * 3 2 1 28 28 H 1.09000 * 109.46680 * 305.85271 * 5 4 2 29 29 H 1.09000 * 109.46355 * 65.82290 * 5 4 2 30 30 H 1.08991 * 109.50407 * 60.76604 * 6 5 4 31 31 H 1.09006 * 109.49783 * 180.87958 * 6 5 4 32 32 H 1.09004 * 109.52253 * 297.74715 * 7 6 5 33 33 H 1.09006 * 109.51851 * 177.56321 * 7 6 5 34 34 H 1.09007 * 109.46810 * 59.99780 * 11 10 8 35 35 H 1.09003 * 109.46936 * 300.00543 * 11 10 8 36 36 H 0.97001 * 119.99646 * 179.97438 * 15 14 12 37 37 H 1.08999 * 109.46469 * 54.15043 * 20 4 2 38 38 H 1.08993 * 109.45416 * 294.16963 * 20 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0197 -0.6925 1.1995 5 6 1.4684 -2.0509 1.2848 6 6 1.8811 -2.6877 2.6138 7 6 3.4092 -2.7305 2.7009 8 6 3.9606 -1.3090 2.5609 9 1 3.5987 -0.6948 3.3855 10 8 5.3888 -1.3467 2.5850 11 6 5.9515 -1.2225 3.8927 12 6 7.4547 -1.2743 3.7998 13 1 7.9327 -1.3900 2.8382 14 6 8.2200 -1.1739 4.9424 15 7 7.6380 -1.0325 6.1133 16 14 10.0833 -1.2388 4.8272 17 1 10.6680 -1.1096 6.1861 18 1 10.4976 -2.5339 4.2306 19 1 10.5655 -0.1237 3.9733 20 6 3.4876 -0.7115 1.2337 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 0.5137 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 1.8934 -0.5139 -0.8899 25 1 1.6766 1.9563 0.8900 26 1 3.1300 1.4425 0.0005 27 1 1.6767 1.9563 -0.8900 28 1 0.3809 -2.0059 1.2259 29 1 1.8522 -2.6510 0.4598 30 1 1.4859 -2.0958 3.4392 31 1 1.4848 -3.7016 2.6700 32 1 3.8025 -3.3545 1.8983 33 1 3.7077 -3.1438 3.6644 34 1 5.5975 -2.0409 4.5198 35 1 5.6474 -0.2717 4.3303 36 1 8.1764 -0.9623 6.9171 37 1 3.8664 0.3060 1.1377 38 1 3.8621 -1.3178 0.4090 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259998516.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:58:29 Heat of formation + Delta-G solvation = -59.107675 kcal Electronic energy + Delta-G solvation = -16342.001942 eV Core-core repulsion = 13797.869635 eV Total energy + Delta-G solvation = -2544.132308 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.29996 -36.67296 -34.22656 -32.64236 -30.58445 -29.75193 -27.40209 -26.59355 -24.04368 -22.45951 -21.95615 -20.18419 -19.51882 -16.62218 -16.31009 -15.42369 -14.89803 -14.71063 -14.35020 -14.22201 -13.66970 -13.45564 -12.98373 -12.72284 -12.44967 -12.25422 -12.06641 -11.71835 -11.61017 -11.17729 -11.09070 -10.87206 -10.84393 -10.73390 -10.33929 -10.24452 -10.14343 -9.81441 -9.08441 -8.76889 -8.20478 -8.09177 -6.08805 -4.10618 3.33376 3.35950 3.39755 3.82382 4.38381 4.78294 4.92298 5.03588 5.13657 5.22347 5.27212 5.28733 5.34191 5.53189 5.60252 5.69402 5.72375 5.77201 5.79675 5.89236 5.97229 6.00566 6.12173 6.20810 6.26418 6.29603 6.32724 6.59762 6.70474 7.15344 7.24470 7.25049 7.47521 7.81669 8.18455 8.62243 9.02806 9.54064 11.02585 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.044656 B = 0.005413 C = 0.005067 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 626.863112 B = 5171.701433 C = 5525.071946 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.078 3.922 3 C -0.148 4.148 4 N -0.532 5.532 5 C 0.052 3.948 6 C -0.114 4.114 7 C -0.142 4.142 8 C 0.095 3.905 9 H 0.059 0.941 10 O -0.392 6.392 11 C 0.198 3.802 12 C -0.516 4.516 13 H 0.065 0.935 14 C 0.057 3.943 15 N -0.898 5.898 16 Si 0.908 3.092 17 H -0.286 1.286 18 H -0.275 1.275 19 H -0.275 1.275 20 C 0.059 3.941 21 H 0.064 0.936 22 H 0.057 0.943 23 H 0.055 0.945 24 H 0.037 0.963 25 H 0.064 0.936 26 H 0.060 0.940 27 H 0.056 0.944 28 H 0.076 0.924 29 H 0.030 0.970 30 H 0.069 0.931 31 H 0.064 0.936 32 H 0.062 0.938 33 H 0.067 0.933 34 H 0.005 0.995 35 H 0.005 0.995 36 H 0.264 0.736 37 H 0.083 0.917 38 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.897 0.415 -10.068 17.166 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.030 4.030 3 C -0.206 4.206 4 N -0.259 5.259 5 C -0.076 4.076 6 C -0.151 4.151 7 C -0.180 4.180 8 C 0.035 3.965 9 H 0.077 0.923 10 O -0.311 6.311 11 C 0.124 3.876 12 C -0.554 4.554 13 H 0.083 0.917 14 C -0.144 4.144 15 N -0.537 5.537 16 Si 0.735 3.265 17 H -0.211 1.211 18 H -0.200 1.200 19 H -0.200 1.200 20 C -0.068 4.068 21 H 0.083 0.917 22 H 0.076 0.924 23 H 0.074 0.926 24 H 0.055 0.945 25 H 0.083 0.917 26 H 0.079 0.921 27 H 0.075 0.925 28 H 0.095 0.905 29 H 0.048 0.952 30 H 0.088 0.912 31 H 0.083 0.917 32 H 0.080 0.920 33 H 0.086 0.914 34 H 0.023 0.977 35 H 0.023 0.977 36 H 0.074 0.926 37 H 0.101 0.899 38 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -13.885 0.676 -9.625 16.908 hybrid contribution 1.131 -0.514 -0.336 1.287 sum -12.755 0.162 -9.961 16.184 Atomic orbital electron populations 1.21923 0.94556 1.01829 1.02087 1.21566 0.95342 0.95224 0.90911 1.21912 1.01633 0.95110 1.01932 1.61877 1.08267 1.17073 1.38719 1.22178 0.99596 0.88529 0.97271 1.21544 0.96250 0.99949 0.97406 1.22095 0.94585 0.98728 1.02589 1.21727 0.83978 0.94379 0.96391 0.92317 1.87841 1.16038 1.94034 1.33162 1.20222 0.93578 0.95194 0.78645 1.21032 0.90213 1.50280 0.93910 0.91666 1.24942 0.99426 0.95139 0.94912 1.69958 1.35910 1.49848 0.98006 0.86404 0.84238 0.78810 0.77069 1.21143 1.20043 1.20022 1.22096 0.86027 1.01507 0.97204 0.91698 0.92431 0.92572 0.94514 0.91683 0.92102 0.92494 0.90548 0.95189 0.91187 0.91693 0.91971 0.91437 0.97699 0.97681 0.92613 0.89915 0.94579 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.39 8.84 37.16 0.33 -1.06 16 2 C 0.08 0.91 2.68 -67.71 -0.18 0.73 16 3 C -0.15 -1.65 8.97 37.16 0.33 -1.32 16 4 N -0.53 -7.49 4.52 -226.69 -1.03 -8.52 16 5 C 0.05 0.66 5.13 -3.83 -0.02 0.64 16 6 C -0.11 -1.55 6.09 -26.65 -0.16 -1.71 16 7 C -0.14 -2.46 5.62 -26.61 -0.15 -2.61 16 8 C 0.09 1.86 2.77 -26.65 -0.07 1.79 16 9 H 0.06 1.21 7.79 -51.93 -0.40 0.80 16 10 O -0.39 -9.70 9.97 -35.23 -0.35 -10.05 16 11 C 0.20 5.53 5.50 36.00 0.20 5.73 16 12 C -0.52 -15.41 9.43 -34.44 -0.32 -15.73 16 13 H 0.07 1.93 7.81 -52.49 -0.41 1.52 16 14 C 0.06 1.66 5.46 -17.82 -0.10 1.57 16 15 N -0.90 -27.13 13.29 55.43 0.74 -26.39 16 16 Si 0.91 22.03 29.54 -169.99 -5.02 17.01 16 17 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 18 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 19 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 20 C 0.06 0.99 4.87 -3.83 -0.02 0.97 16 21 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 22 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 23 H 0.06 0.50 6.22 -51.93 -0.32 0.18 16 24 H 0.04 0.44 8.14 -51.93 -0.42 0.01 16 25 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 26 H 0.06 0.74 6.28 -51.93 -0.33 0.41 16 27 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.08 0.83 5.90 -51.93 -0.31 0.52 16 29 H 0.03 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 31 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 33 H 0.07 1.25 7.95 -51.93 -0.41 0.83 16 34 H 0.01 0.15 7.95 -51.92 -0.41 -0.26 16 35 H 0.01 0.16 8.09 -51.93 -0.42 -0.26 16 36 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 37 H 0.08 1.40 6.00 -51.93 -0.31 1.08 16 38 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 LS Contribution 297.74 15.07 4.49 4.49 Total: -1.00 -30.74 297.74 -8.03 -38.77 By element: Atomic # 1 Polarization: 2.40 SS G_CDS: -6.69 Total: -4.29 kcal Atomic # 6 Polarization: -10.85 SS G_CDS: -0.17 Total: -11.01 kcal Atomic # 7 Polarization: -34.62 SS G_CDS: -0.29 Total: -34.91 kcal Atomic # 8 Polarization: -9.70 SS G_CDS: -0.35 Total: -10.05 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -5.02 Total: 17.01 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -30.74 -8.03 -38.77 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259998516.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.335 kcal (2) G-P(sol) polarization free energy of solvation -30.740 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.075 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.032 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.773 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.108 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds