Wall clock time and date at job start Sun Mar 29 2020 21:58:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52997 * 109.47061 * 2 1 4 4 N 1.46903 * 109.46905 * 119.99944 * 2 1 3 5 5 C 1.46844 * 111.00032 * 55.79090 * 4 2 1 6 6 C 1.53042 * 109.52144 * 185.83872 * 5 4 2 7 7 C 1.53120 * 109.27687 * 300.81984 * 6 5 4 8 8 C 1.53113 * 109.16064 * 57.65883 * 7 6 5 9 9 H 1.08999 * 109.53747 * 62.30187 * 8 7 6 10 10 O 1.42897 * 109.50349 * 182.40479 * 8 7 6 11 11 C 1.42905 * 113.99899 * 269.79799 * 10 8 7 12 12 C 1.50694 * 109.47179 * 180.02562 * 11 10 8 13 13 H 1.08000 * 120.00563 * 0.02562 * 12 11 10 14 14 C 1.37885 * 119.99902 * 180.02562 * 12 11 10 15 15 N 1.31516 * 119.99913 * 359.97438 * 14 12 11 16 16 Si 1.86798 * 119.99766 * 179.97438 * 14 12 11 17 17 H 1.48506 * 109.46985 * 179.97438 * 16 14 12 18 18 H 1.48494 * 109.47276 * 299.99832 * 16 14 12 19 19 H 1.48498 * 109.47150 * 60.00043 * 16 14 12 20 20 C 1.46846 * 110.99674 * 180.02562 * 4 2 1 21 21 H 1.08997 * 109.47205 * 299.99952 * 1 2 3 22 22 H 1.08999 * 109.47227 * 60.00501 * 1 2 3 23 23 H 1.09003 * 109.46897 * 179.97438 * 1 2 3 24 24 H 1.09001 * 109.47125 * 239.99538 * 2 1 3 25 25 H 1.09005 * 109.46814 * 59.99723 * 3 2 1 26 26 H 1.08999 * 109.47309 * 179.97438 * 3 2 1 27 27 H 1.09005 * 109.47115 * 299.99950 * 3 2 1 28 28 H 1.09000 * 109.46680 * 305.85271 * 5 4 2 29 29 H 1.09000 * 109.46355 * 65.82290 * 5 4 2 30 30 H 1.08991 * 109.50407 * 60.76604 * 6 5 4 31 31 H 1.09006 * 109.49783 * 180.87958 * 6 5 4 32 32 H 1.09004 * 109.52253 * 297.74715 * 7 6 5 33 33 H 1.09006 * 109.51851 * 177.56321 * 7 6 5 34 34 H 1.09007 * 109.46810 * 59.99780 * 11 10 8 35 35 H 1.09003 * 109.46936 * 300.00543 * 11 10 8 36 36 H 0.97001 * 119.99646 * 179.97438 * 15 14 12 37 37 H 1.08999 * 109.46469 * 54.15043 * 20 4 2 38 38 H 1.08993 * 109.45416 * 294.16963 * 20 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0197 -0.6925 1.1995 5 6 1.4684 -2.0509 1.2848 6 6 1.8811 -2.6877 2.6138 7 6 3.4092 -2.7305 2.7009 8 6 3.9606 -1.3090 2.5609 9 1 3.5987 -0.6948 3.3855 10 8 5.3888 -1.3467 2.5850 11 6 5.9515 -1.2225 3.8927 12 6 7.4547 -1.2743 3.7998 13 1 7.9327 -1.3900 2.8382 14 6 8.2200 -1.1739 4.9424 15 7 7.6380 -1.0325 6.1133 16 14 10.0833 -1.2388 4.8272 17 1 10.6680 -1.1096 6.1861 18 1 10.4976 -2.5339 4.2306 19 1 10.5655 -0.1237 3.9733 20 6 3.4876 -0.7115 1.2337 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 0.5137 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 1.8934 -0.5139 -0.8899 25 1 1.6766 1.9563 0.8900 26 1 3.1300 1.4425 0.0005 27 1 1.6767 1.9563 -0.8900 28 1 0.3809 -2.0059 1.2259 29 1 1.8522 -2.6510 0.4598 30 1 1.4859 -2.0958 3.4392 31 1 1.4848 -3.7016 2.6700 32 1 3.8025 -3.3545 1.8983 33 1 3.7077 -3.1438 3.6644 34 1 5.5975 -2.0409 4.5198 35 1 5.6474 -0.2717 4.3303 36 1 8.1764 -0.9623 6.9171 37 1 3.8664 0.3060 1.1377 38 1 3.8621 -1.3178 0.4090 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259998516.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:58:29 Heat of formation + Delta-G solvation = -79.342266 kcal Electronic energy + Delta-G solvation = -16342.879380 eV Core-core repulsion = 13797.869635 eV Total energy + Delta-G solvation = -2545.009746 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.58151 -38.35010 -35.57428 -34.76705 -31.77574 -31.12067 -29.21727 -27.83581 -25.35597 -24.47403 -23.36450 -21.32118 -20.77194 -18.67505 -17.76320 -17.19293 -16.32905 -16.04963 -15.96386 -15.86660 -14.88979 -14.85318 -14.32987 -14.22856 -13.90048 -13.67219 -13.24927 -13.01229 -12.82629 -12.70971 -12.62244 -12.31148 -12.24216 -12.09053 -12.00230 -11.65880 -11.48655 -11.36921 -11.22200 -10.81403 -10.16646 -9.30270 -8.33456 -6.46842 1.38849 1.43996 1.52461 2.31830 2.63525 2.99958 3.38416 3.78654 3.82852 4.00490 4.10532 4.11625 4.24060 4.41798 4.43436 4.53721 4.55484 4.70282 4.76558 4.80417 4.87581 4.94135 4.98717 4.99254 5.03295 5.06643 5.12850 5.26508 5.30613 5.35600 5.43604 5.53612 5.93887 6.05994 6.20653 6.52523 6.79902 7.25191 8.78713 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.044656 B = 0.005413 C = 0.005067 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 626.863112 B = 5171.701433 C = 5525.071946 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.074 3.926 3 C -0.148 4.148 4 N -0.540 5.540 5 C 0.052 3.948 6 C -0.106 4.106 7 C -0.138 4.138 8 C 0.084 3.916 9 H 0.043 0.957 10 O -0.406 6.406 11 C 0.215 3.785 12 C -0.553 4.553 13 H 0.062 0.938 14 C 0.008 3.992 15 N -0.930 5.930 16 Si 0.985 3.015 17 H -0.273 1.273 18 H -0.265 1.265 19 H -0.265 1.265 20 C 0.072 3.928 21 H 0.060 0.940 22 H 0.076 0.924 23 H 0.064 0.936 24 H 0.039 0.961 25 H 0.058 0.942 26 H 0.043 0.957 27 H 0.079 0.921 28 H 0.105 0.895 29 H 0.034 0.966 30 H 0.066 0.934 31 H 0.092 0.908 32 H 0.061 0.939 33 H 0.046 0.954 34 H -0.015 1.015 35 H -0.018 1.018 36 H 0.272 0.728 37 H 0.075 0.925 38 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.492 0.162 -11.238 18.339 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.034 4.034 3 C -0.205 4.205 4 N -0.267 5.267 5 C -0.075 4.075 6 C -0.144 4.144 7 C -0.176 4.176 8 C 0.025 3.975 9 H 0.061 0.939 10 O -0.326 6.326 11 C 0.140 3.860 12 C -0.590 4.590 13 H 0.080 0.920 14 C -0.191 4.191 15 N -0.569 5.569 16 Si 0.807 3.193 17 H -0.198 1.198 18 H -0.190 1.190 19 H -0.190 1.190 20 C -0.056 4.056 21 H 0.079 0.921 22 H 0.095 0.905 23 H 0.083 0.917 24 H 0.057 0.943 25 H 0.077 0.923 26 H 0.062 0.938 27 H 0.098 0.902 28 H 0.123 0.877 29 H 0.052 0.948 30 H 0.085 0.915 31 H 0.110 0.890 32 H 0.080 0.920 33 H 0.065 0.935 34 H 0.003 0.997 35 H 0.000 1.000 36 H 0.080 0.920 37 H 0.094 0.906 38 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges -14.514 0.425 -10.810 18.103 hybrid contribution 1.226 -0.419 0.024 1.296 sum -13.288 0.006 -10.787 17.115 Atomic orbital electron populations 1.21888 0.92355 1.02661 1.02860 1.21721 0.97001 0.94913 0.89752 1.21914 1.00570 0.95259 1.02753 1.61905 1.06066 1.18289 1.40454 1.22271 1.01157 0.87615 0.96506 1.21537 0.92940 1.01781 0.98140 1.22041 0.97588 0.96598 1.01389 1.22062 0.81353 0.96221 0.97830 0.93871 1.87786 1.19342 1.94174 1.31271 1.19807 0.93418 0.93064 0.79668 1.21367 0.91265 1.52006 0.94371 0.92004 1.25984 1.05268 0.93741 0.94103 1.70072 1.38304 1.49622 0.98880 0.85216 0.76903 0.79391 0.77785 1.19817 1.18969 1.18961 1.21861 0.88251 1.00614 0.94875 0.92097 0.90524 0.91680 0.94302 0.92330 0.93769 0.90203 0.87706 0.94795 0.91515 0.88967 0.92024 0.93467 0.99681 1.00005 0.91966 0.90628 0.94920 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.23 8.84 71.98 0.64 -1.59 16 2 C 0.07 1.57 2.68 44.92 0.12 1.70 16 3 C -0.15 -3.11 8.97 71.98 0.65 -2.47 16 4 N -0.54 -14.56 4.52 -871.11 -3.94 -18.50 16 5 C 0.05 1.20 5.13 86.33 0.44 1.64 16 6 C -0.11 -2.75 6.09 30.65 0.19 -2.56 16 7 C -0.14 -4.86 5.62 30.67 0.17 -4.69 16 8 C 0.08 3.43 2.77 30.65 0.08 3.51 16 9 H 0.04 1.88 7.79 -2.39 -0.02 1.86 16 10 O -0.41 -21.05 9.97 -148.98 -1.49 -22.53 16 11 C 0.22 12.65 5.50 71.23 0.39 13.04 16 12 C -0.55 -33.89 9.43 25.60 0.24 -33.65 16 13 H 0.06 3.74 7.81 -2.91 -0.02 3.71 16 14 C 0.01 0.46 5.46 84.66 0.46 0.92 16 15 N -0.93 -56.98 13.29 21.45 0.28 -56.69 16 16 Si 0.98 45.02 29.54 68.60 2.03 47.04 16 17 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 18 H -0.26 -11.65 7.11 99.48 0.71 -10.94 16 19 H -0.26 -11.65 7.11 99.48 0.71 -10.94 16 20 C 0.07 2.44 4.87 86.33 0.42 2.86 16 21 H 0.06 1.03 8.14 -2.39 -0.02 1.02 16 22 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 23 H 0.06 0.92 6.22 -2.39 -0.01 0.91 16 24 H 0.04 0.84 8.14 -2.39 -0.02 0.82 16 25 H 0.06 1.30 8.14 -2.38 -0.02 1.28 16 26 H 0.04 1.06 6.28 -2.39 -0.01 1.05 16 27 H 0.08 1.30 8.14 -2.38 -0.02 1.28 16 28 H 0.10 1.89 5.90 -2.39 -0.01 1.87 16 29 H 0.03 0.78 8.14 -2.39 -0.02 0.76 16 30 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 31 H 0.09 1.92 8.14 -2.38 -0.02 1.90 16 32 H 0.06 2.15 8.14 -2.38 -0.02 2.13 16 33 H 0.05 1.81 7.95 -2.38 -0.02 1.80 16 34 H -0.01 -0.89 7.95 -2.38 -0.02 -0.91 16 35 H -0.02 -1.10 8.09 -2.39 -0.02 -1.12 16 36 H 0.27 15.39 8.31 -92.71 -0.77 14.62 16 37 H 0.08 2.63 6.00 -2.39 -0.01 2.62 16 38 H 0.03 1.11 8.14 -2.39 -0.02 1.09 16 Total: -1.00 -67.32 297.74 1.69 -65.63 By element: Atomic # 1 Polarization: 5.34 SS G_CDS: 1.00 Total: 6.34 kcal Atomic # 6 Polarization: -25.09 SS G_CDS: 3.81 Total: -21.29 kcal Atomic # 7 Polarization: -71.54 SS G_CDS: -3.66 Total: -75.20 kcal Atomic # 8 Polarization: -21.05 SS G_CDS: -1.49 Total: -22.53 kcal Atomic # 14 Polarization: 45.02 SS G_CDS: 2.03 Total: 47.04 kcal Total: -67.32 1.69 -65.63 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259998516.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.716 kcal (2) G-P(sol) polarization free energy of solvation -67.315 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.031 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.689 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.626 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.342 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds